Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12755

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,901,094	+		DDA3937_RS12750	0.25	-2.4
2,901,173	+		DDA3937_RS12750	0.33	-1.1
2,901,174	-		DDA3937_RS12750	0.33	+1.1
2,901,174	-		DDA3937_RS12750	0.33	-1.8
2,901,174	-		DDA3937_RS12750	0.33	+1.4
2,901,178	-		DDA3937_RS12750	0.33	-0.1
2,901,178	-		DDA3937_RS12750	0.33	-1.8
2,901,188	+		DDA3937_RS12750	0.34	-0.2
2,901,231	-		DDA3937_RS12750	0.39	+0.4
2,901,365	+		DDA3937_RS12750	0.52	+2.6
2,901,365	+		DDA3937_RS12750	0.52	+0.1
2,901,365	+		DDA3937_RS12750	0.52	+0.6
2,901,366	-		DDA3937_RS12750	0.52	+2.6
2,901,366	-		DDA3937_RS12750	0.52	+0.7
2,901,367	+		DDA3937_RS12750	0.52	+1.3
2,901,367	+		DDA3937_RS12750	0.52	-1.8
2,901,380	+		DDA3937_RS12750	0.54	+0.9
2,901,380	+		DDA3937_RS12750	0.54	-0.4
2,901,380	+		DDA3937_RS12750	0.54	-0.3
2,901,380	+		DDA3937_RS12750	0.54	-2.1
2,901,381	-		DDA3937_RS12750	0.54	+1.8
2,901,381	-		DDA3937_RS12750	0.54	-1.8
2,901,381	-		DDA3937_RS12750	0.54	-1.5
2,901,423	-		DDA3937_RS12750	0.58	+3.3
2,901,447	-		DDA3937_RS12750	0.60	-2.0
2,901,449	+		DDA3937_RS12750	0.61	+1.3
2,901,511	+		DDA3937_RS12750	0.67	-1.4
2,901,512	-		DDA3937_RS12750	0.67	+0.0
2,901,514	+		DDA3937_RS12750	0.67	-0.6
2,901,514	+		DDA3937_RS12750	0.67	-0.8
2,901,514	+		DDA3937_RS12750	0.67	+0.4
2,901,514	+		DDA3937_RS12750	0.67	-0.6
2,901,515	-		DDA3937_RS12750	0.67	-3.6
2,901,515	-		DDA3937_RS12750	0.67	-1.6
2,901,515	-		DDA3937_RS12750	0.67	-1.6
2,901,713	+		DDA3937_RS12750	0.87	-2.8
2,901,713	+		DDA3937_RS12750	0.87	-1.6
2,901,714	-		DDA3937_RS12750	0.87	-1.4
2,901,714	-		DDA3937_RS12750	0.87	+0.0
2,901,715	+		DDA3937_RS12750	0.87	-0.5
2,901,715	+		DDA3937_RS12750	0.87	+0.3
2,901,715	+		DDA3937_RS12750	0.87	-1.1
2,901,715	+		DDA3937_RS12750	0.87	+0.2
2,901,716	-		DDA3937_RS12750	0.87	+1.1
2,901,716	-		DDA3937_RS12750	0.87	+0.2
2,901,716	-				+1.2
2,901,716	-		DDA3937_RS12750	0.87	-1.4
2,901,716	-		DDA3937_RS12750	0.87	-1.1
2,901,720	-		DDA3937_RS12750	0.88	+0.2
2,901,720	-		DDA3937_RS12750	0.88	-0.9
2,901,722	+		DDA3937_RS12750	0.88	+2.8
2,901,722	+		DDA3937_RS12750	0.88	+0.1
2,901,723	-		DDA3937_RS12750	0.88	-0.9
2,901,763	+				+1.2
2,901,806	+				+0.7
2,901,813	+				-1.1
2,901,814	-				+6.2
2,901,814	-				-2.5
2,901,828	-				+0.9
2,901,860	-				-0.4
2,902,086	+				-1.5
2,902,086	+				+1.3
2,902,088	+				+0.3
2,902,088	+				-0.9
2,902,089	-				-1.4
2,902,089	-				-0.4
2,902,089	-				-0.1
2,902,089	-				-2.7
2,902,089	-				-0.0
2,902,237	-		DDA3937_RS12755	0.36	-1.4
2,902,318	+		DDA3937_RS12755	0.56	-2.1
2,902,318	+		DDA3937_RS12755	0.56	-2.0
2,902,318	+		DDA3937_RS12755	0.56	-1.3
2,902,319	-		DDA3937_RS12755	0.56	-0.8
2,902,319	-				+0.2
2,902,319	-		DDA3937_RS12755	0.56	-2.4
2,902,423	+		DDA3937_RS12755	0.81	-1.4
2,902,423	+		DDA3937_RS12755	0.81	-2.7
2,902,424	-		DDA3937_RS12755	0.81	-0.5
2,902,424	-		DDA3937_RS12755	0.81	-0.6
2,902,425	+		DDA3937_RS12755	0.82	+0.1
2,902,425	+		DDA3937_RS12755	0.82	-1.3
2,902,425	+		DDA3937_RS12755	0.82	-0.8
2,902,425	+		DDA3937_RS12755	0.82	-1.3
2,902,425	+		DDA3937_RS12755	0.82	-2.8
2,902,425	+		DDA3937_RS12755	0.82	-0.1
2,902,425	+		DDA3937_RS12755	0.82	-1.5
2,902,425	+		DDA3937_RS12755	0.82	-1.4
2,902,425	+		DDA3937_RS12755	0.82	+0.9
2,902,425	+		DDA3937_RS12755	0.82	-2.6
2,902,425	+		DDA3937_RS12755	0.82	+0.2
2,902,425	+		DDA3937_RS12755	0.82	-2.4
2,902,425	+		DDA3937_RS12755	0.82	-1.2
2,902,425	+		DDA3937_RS12755	0.82	+1.2
2,902,426	-		DDA3937_RS12755	0.82	-1.7
2,902,426	-		DDA3937_RS12755	0.82	-1.3
2,902,426	-		DDA3937_RS12755	0.82	-2.8
2,902,426	-		DDA3937_RS12755	0.82	-1.3
2,902,426	-		DDA3937_RS12755	0.82	+0.2
2,902,426	-		DDA3937_RS12755	0.82	-0.3
2,902,426	-		DDA3937_RS12755	0.82	-1.0
2,902,426	-		DDA3937_RS12755	0.82	-2.6
2,902,431	+		DDA3937_RS12755	0.83	-2.6
2,902,431	+		DDA3937_RS12755	0.83	-3.0
2,902,431	+		DDA3937_RS12755	0.83	-0.4
2,902,431	+		DDA3937_RS12755	0.83	-0.6
2,902,431	+		DDA3937_RS12755	0.83	-2.8
2,902,432	-		DDA3937_RS12755	0.83	-1.3
2,902,432	-		DDA3937_RS12755	0.83	-1.9
2,902,432	-		DDA3937_RS12755	0.83	-2.0
2,902,432	-		DDA3937_RS12755	0.83	+0.9
2,902,501	+				-0.7
2,902,586	+				-1.0
2,902,606	+				-0.7
2,902,606	+				-1.8
2,902,606	+				-1.9
2,902,606	+				-1.4
2,902,606	+				-1.4
2,902,606	+				-0.4
2,902,607	-				-1.1
2,902,607	-				-0.8
2,902,607	-				+0.5
2,902,607	-				-1.6
2,902,607	-				-1.6
2,902,607	-				+1.5
2,902,607	-				-1.0
2,902,607	-				-1.6
2,902,607	-				-2.3
2,902,607	-				+0.7
2,902,607	-				+1.0
2,902,607	-				-0.3
2,902,656	-				-1.8
2,902,656	-				-0.2
2,902,748	+		DDA3937_RS12760	0.13	+0.0
2,902,874	+		DDA3937_RS12760	0.23	-0.4
2,902,931	+		DDA3937_RS12760	0.28	-2.1
2,902,931	+		DDA3937_RS12760	0.28	-2.1
2,902,931	+		DDA3937_RS12760	0.28	+1.2
2,902,931	+		DDA3937_RS12760	0.28	-1.6
2,902,931	+		DDA3937_RS12760	0.28	-0.4
2,902,932	-		DDA3937_RS12760	0.28	-1.5
2,902,932	-		DDA3937_RS12760	0.28	-2.8
2,902,932	-		DDA3937_RS12760	0.28	-1.5
2,902,932	-		DDA3937_RS12760	0.28	-0.8
2,903,009	+		DDA3937_RS12760	0.34	-1.7
2,903,010	-		DDA3937_RS12760	0.34	-3.1
2,903,010	-		DDA3937_RS12760	0.34	-0.7
2,903,010	-		DDA3937_RS12760	0.34	-0.8
2,903,010	-		DDA3937_RS12760	0.34	-1.6
2,903,100	-		DDA3937_RS12760	0.42	-1.9
2,903,104	+		DDA3937_RS12760	0.42	-1.2
2,903,127	-		DDA3937_RS12760	0.44	+1.6
2,903,133	+		DDA3937_RS12760	0.44	-2.4
2,903,133	+		DDA3937_RS12760	0.44	-1.4