Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12180

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,765,951	+				+0.7
2,765,953	+				+4.4
2,765,953	+				+1.4
2,765,953	+				-1.9
2,765,954	-				-0.9
2,765,954	-				+1.2
2,765,954	-				-0.3
2,765,954	-				-0.3
2,765,969	+				-0.1
2,765,969	+				-2.3
2,765,973	-				-2.9
2,766,006	+				-1.0
2,766,006	+				+0.9
2,766,007	-				-1.1
2,766,009	+				-0.5
2,766,009	+				+0.5
2,766,009	+				+0.2
2,766,010	-				-0.8
2,766,010	-				-0.8
2,766,010	-				+0.5
2,766,012	+				-1.1
2,766,012	+				-1.1
2,766,013	-				-1.8
2,766,030	-				+1.5
2,766,044	-				-1.6
2,766,083	+				+1.8
2,766,083	+				-0.8
2,766,084	-				+0.6
2,766,084	-				-1.2
2,766,137	-				-0.9
2,766,151	+				-0.3
2,766,152	-				+1.5
2,766,152	-				-0.9
2,766,152	-				-1.2
2,766,152	-				+0.2
2,766,196	+				+2.5
2,766,196	+				-0.8
2,766,196	+				-1.2
2,766,196	+				-1.9
2,766,197	-		DDA3937_RS12175	0.10	-0.1
2,766,197	-		DDA3937_RS12175	0.10	-0.3
2,766,198	+		DDA3937_RS12175	0.10	-0.6
2,766,198	+		DDA3937_RS12175	0.10	-0.2
2,766,198	+		DDA3937_RS12175	0.10	-1.1
2,766,198	+		DDA3937_RS12175	0.10	-0.8
2,766,198	+		DDA3937_RS12175	0.10	-0.1
2,766,198	+		DDA3937_RS12175	0.10	+1.2
2,766,198	+		DDA3937_RS12175	0.10	-0.3
2,766,199	-		DDA3937_RS12175	0.10	+0.5
2,766,199	-		DDA3937_RS12175	0.10	-0.1
2,766,199	-		DDA3937_RS12175	0.10	-0.6
2,766,199	-		DDA3937_RS12175	0.10	-1.3
2,766,199	-		DDA3937_RS12175	0.10	-1.6
2,766,199	-		DDA3937_RS12175	0.10	-1.1
2,766,199	-		DDA3937_RS12175	0.10	+3.2
2,766,199	-		DDA3937_RS12175	0.10	-0.6
2,766,238	+				+0.2
2,766,357	+		DDA3937_RS12175	0.33	-1.6
2,766,358	-		DDA3937_RS12175	0.33	-0.7
2,766,409	+		DDA3937_RS12175	0.41	-1.3
2,766,409	+		DDA3937_RS12175	0.41	-0.1
2,766,410	-		DDA3937_RS12175	0.41	-1.0
2,766,426	+		DDA3937_RS12175	0.43	-2.2
2,766,426	+		DDA3937_RS12175	0.43	+0.6
2,766,426	+		DDA3937_RS12175	0.43	-0.6
2,766,426	+		DDA3937_RS12175	0.43	-0.1
2,766,426	+		DDA3937_RS12175	0.43	-0.9
2,766,427	-		DDA3937_RS12175	0.44	+0.7
2,766,427	-		DDA3937_RS12175	0.44	+0.8
2,766,734	+		DDA3937_RS12175	0.88	-1.6
2,766,734	+		DDA3937_RS12175	0.88	-2.9
2,766,734	+		DDA3937_RS12175	0.88	-1.9
2,766,734	+		DDA3937_RS12175	0.88	-1.8
2,766,735	-		DDA3937_RS12175	0.88	-1.8
2,766,735	-				+0.9
2,766,735	-		DDA3937_RS12175	0.88	+1.7
2,766,735	-		DDA3937_RS12175	0.88	+3.4
2,766,735	-		DDA3937_RS12175	0.88	+0.5
2,766,735	-		DDA3937_RS12175	0.88	+0.1
2,766,747	-				+0.7
2,766,754	+				-0.1
2,766,754	+				-0.6
2,766,755	-				-0.2
2,766,787	-				+0.1
2,766,864	+				-2.8
2,766,864	+				-0.8
2,766,878	+				-1.3
2,766,879	-				-0.0
2,766,889	-				-0.2
2,766,904	+				+0.8
2,766,904	+				+1.2
2,766,904	+				-1.3
2,766,905	-				-0.6
2,766,947	+				+0.7
2,766,948	-				-2.1
2,766,948	-				-2.2
2,767,068	+				-1.6
2,767,069	-				+1.7
2,767,148	+		DDA3937_RS12180	0.16	-0.1
2,767,160	-		DDA3937_RS12180	0.17	-1.1
2,767,160	-		DDA3937_RS12180	0.17	+0.3
2,767,171	+		DDA3937_RS12180	0.17	-0.1
2,767,172	-		DDA3937_RS12180	0.18	-1.3
2,767,198	+		DDA3937_RS12180	0.20	+0.5
2,767,199	-		DDA3937_RS12180	0.20	-1.7
2,767,201	-		DDA3937_RS12180	0.20	+0.4
2,767,227	-				+0.2
2,767,275	-		DDA3937_RS12180	0.26	+0.5
2,767,282	+		DDA3937_RS12180	0.26	+0.2
2,767,316	+		DDA3937_RS12180	0.29	-0.2
2,767,316	+		DDA3937_RS12180	0.29	-1.6
2,767,316	+		DDA3937_RS12180	0.29	-0.5
2,767,316	+		DDA3937_RS12180	0.29	+0.7
2,767,317	-		DDA3937_RS12180	0.29	-0.5
2,767,319	+		DDA3937_RS12180	0.29	-0.6
2,767,424	+		DDA3937_RS12180	0.37	-2.2
2,767,471	+		DDA3937_RS12180	0.41	+0.7
2,767,471	+		DDA3937_RS12180	0.41	-0.8
2,767,472	-		DDA3937_RS12180	0.41	+1.2
2,767,473	+		DDA3937_RS12180	0.41	-0.0
2,767,473	+		DDA3937_RS12180	0.41	+0.5
2,767,473	+		DDA3937_RS12180	0.41	+0.3
2,767,473	+		DDA3937_RS12180	0.41	+0.7
2,767,474	-		DDA3937_RS12180	0.41	-1.2
2,767,474	-		DDA3937_RS12180	0.41	+0.0
2,767,474	-		DDA3937_RS12180	0.41	-1.6
2,767,474	-				-0.3
2,767,475	+		DDA3937_RS12180	0.41	-0.3
2,767,475	+		DDA3937_RS12180	0.41	-3.2
2,767,475	+		DDA3937_RS12180	0.41	-1.9
2,767,475	+				-0.3
2,767,475	+		DDA3937_RS12180	0.41	+3.0
2,767,476	-		DDA3937_RS12180	0.41	+3.4
2,767,476	-		DDA3937_RS12180	0.41	-0.3
2,767,476	-		DDA3937_RS12180	0.41	+0.4
2,767,476	-		DDA3937_RS12180	0.41	-1.9
2,767,476	-		DDA3937_RS12180	0.41	-2.8
2,767,476	-		DDA3937_RS12180	0.41	+0.8
2,767,582	+		DDA3937_RS12180	0.50	+1.5
2,767,608	+		DDA3937_RS12180	0.52	-0.5
2,767,614	+		DDA3937_RS12180	0.52	-3.7
2,767,615	-		DDA3937_RS12180	0.52	+0.1
2,767,615	-		DDA3937_RS12180	0.52	-1.1
2,767,640	-		DDA3937_RS12180	0.54	+0.2
2,767,651	+		DDA3937_RS12180	0.55	-1.1
2,767,652	-		DDA3937_RS12180	0.55	+0.2
2,767,652	-		DDA3937_RS12180	0.55	+0.4
2,767,758	-		DDA3937_RS12180	0.64	-0.3
2,767,885	+		DDA3937_RS12180	0.73	-0.8
2,767,885	+		DDA3937_RS12180	0.73	+0.5
2,767,885	+		DDA3937_RS12180	0.73	+1.1
2,767,886	-		DDA3937_RS12180	0.74	-0.1
2,768,123	+				-0.6
2,768,124	-				-2.5
2,768,130	-				+1.1
2,768,263	+				+1.2
2,768,321	-				-1.0
2,768,321	-				-0.3
2,768,321	-				-0.3
2,768,359	-				-0.9
2,768,363	+				-0.4
2,768,363	+				+0.2
2,768,364	-				-2.5
2,768,364	-				+0.3
2,768,364	-				-1.5
2,768,366	+				-0.8
2,768,366	+				-0.3
2,768,367	-				-0.8
2,768,367	-				+0.3
2,768,367	-				+1.7
2,768,437	-		DDA3937_RS12185	0.10	-1.6
2,768,437	-		DDA3937_RS12185	0.10	-1.3
2,768,446	+		DDA3937_RS12185	0.11	+0.8
2,768,446	+		DDA3937_RS12185	0.11	+3.9
2,768,446	+		DDA3937_RS12185	0.11	+0.8
2,768,447	-		DDA3937_RS12185	0.11	-1.5
2,768,447	-		DDA3937_RS12185	0.11	-0.6
2,768,518	-		DDA3937_RS12185	0.15	-0.5
2,768,600	+		DDA3937_RS12185	0.21	-0.8
2,768,601	-		DDA3937_RS12185	0.21	-1.6
2,768,601	-				+2.8
2,768,601	-		DDA3937_RS12185	0.21	+0.2
2,768,602	+		DDA3937_RS12185	0.21	-2.5
2,768,602	+		DDA3937_RS12185	0.21	-1.0
2,768,602	+		DDA3937_RS12185	0.21	-0.8
2,768,603	-		DDA3937_RS12185	0.21	+0.5
2,768,603	-		DDA3937_RS12185	0.21	-0.6
2,768,618	-		DDA3937_RS12185	0.22	-0.8
2,768,694	-		DDA3937_RS12185	0.26	-0.5
2,768,737	-		DDA3937_RS12185	0.29	+1.5
2,768,746	+		DDA3937_RS12185	0.30	+0.9
2,768,746	+		DDA3937_RS12185	0.30	-1.6
2,769,022	+		DDA3937_RS12185	0.47	+0.8
2,769,023	-		DDA3937_RS12185	0.47	-2.2
2,769,026	-		DDA3937_RS12185	0.47	+0.3
2,769,083	+		DDA3937_RS12185	0.51	+1.7
2,769,084	-		DDA3937_RS12185	0.51	-0.9
2,769,106	+		DDA3937_RS12185	0.52	+3.1
2,769,106	+		DDA3937_RS12185	0.52	-0.8
2,769,107	-				+0.2
2,769,216	-				+0.2