Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12165

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,762,984	+				+0.1
2,762,985	-				-0.2
2,762,985	-				+0.4
2,763,016	+		DDA3937_RS23520	0.33	-0.8
2,763,017	-		DDA3937_RS23520	0.33	+1.8
2,763,017	-		DDA3937_RS23520	0.33	+0.5
2,763,089	-		DDA3937_RS23520	0.88	-1.2
2,763,127	-				-0.2
2,763,127	-				+1.4
2,763,146	-				-1.6
2,763,197	+				-0.8
2,763,198	-				-0.3
2,763,198	-				-1.4
2,763,198	-				+0.7
2,763,205	-				-0.1
2,763,205	-				-0.8
2,763,205	-				+1.1
2,763,206	+				+1.9
2,763,206	+				-2.1
2,763,207	-				-2.3
2,763,207	-				-0.8
2,763,207	-				+0.2
2,763,219	+				+1.4
2,763,220	-				-0.6
2,763,221	+				+1.3
2,763,221	+				+2.3
2,763,221	+				-2.2
2,763,222	-				-0.3
2,763,222	-				-1.1
2,763,250	+				+1.5
2,763,250	+				-2.2
2,763,257	+				+0.0
2,763,258	-				+0.9
2,763,258	-				-0.8
2,763,258	-				-2.8
2,763,261	+				-1.0
2,763,261	+				+1.1
2,763,262	-				-0.1
2,763,277	+				-1.3
2,763,277	+				-1.9
2,763,277	+				+0.1
2,763,277	+				-0.8
2,763,278	-				-0.8
2,763,278	-				+2.8
2,763,278	-				-1.1
2,763,278	-				+1.3
2,763,281	+				+1.5
2,763,281	+				+0.9
2,763,281	+				+0.1
2,763,282	-				-0.6
2,763,282	-				-1.3
2,763,343	-				-0.8
2,763,343	-				-0.3
2,763,347	+				-0.8
2,763,347	+				-0.8
2,763,348	-				+1.1
2,763,348	-				+0.2
2,763,348	-				-1.8
2,763,351	+				+2.4
2,763,352	-				-0.8
2,763,359	-				-0.3
2,763,466	-				-0.3
2,763,477	+				-0.6
2,763,573	-				-0.3
2,763,609	+				+0.2
2,763,609	+				-2.9
2,763,610	-				-1.3
2,763,610	-				+0.4
2,763,610	-				-0.6
2,763,610	-				-2.5
2,763,611	+				-1.1
2,763,611	+				-0.3
2,763,612	-				+0.5
2,763,612	-				+0.9
2,763,612	-				-0.9
2,763,612	-				-0.6
2,763,614	-				-0.0
2,763,674	+				-1.3
2,763,705	+				-0.6
2,763,784	+				-0.8
2,763,785	-				+1.0
2,763,822	+				-2.5
2,763,822	+				-0.4
2,763,823	-				-0.6
2,763,823	-				+1.3
2,763,899	+				-1.9
2,763,900	-				+0.1
2,763,900	-				-1.4
2,763,953	-				-1.3
2,763,953	-				-0.1
2,763,959	+				+0.8
2,763,959	+				-1.4
2,763,959	+				-0.1
2,763,965	-				-0.4
2,764,126	+		DDA3937_RS12165	0.17	-0.0
2,764,127	-		DDA3937_RS12165	0.17	-0.3
2,764,142	+		DDA3937_RS12165	0.18	-2.3
2,764,142	+		DDA3937_RS12165	0.18	+1.0
2,764,142	+		DDA3937_RS12165	0.18	-0.1
2,764,196	+		DDA3937_RS12165	0.21	-1.3
2,764,197	-		DDA3937_RS12165	0.21	+0.2
2,764,198	+		DDA3937_RS12165	0.21	-0.8
2,764,198	+		DDA3937_RS12165	0.21	-0.9
2,764,198	+		DDA3937_RS12165	0.21	+1.2
2,764,198	+		DDA3937_RS12165	0.21	-1.7
2,764,198	+		DDA3937_RS12165	0.21	-2.2
2,764,198	+		DDA3937_RS12165	0.21	-1.6
2,764,198	+		DDA3937_RS12165	0.21	+2.8
2,764,198	+		DDA3937_RS12165	0.21	-0.3
2,764,198	+		DDA3937_RS12165	0.21	+0.2
2,764,199	-		DDA3937_RS12165	0.22	+0.2
2,764,199	-		DDA3937_RS12165	0.22	+1.9
2,764,199	-		DDA3937_RS12165	0.22	-2.7
2,764,199	-		DDA3937_RS12165	0.22	+0.2
2,764,199	-		DDA3937_RS12165	0.22	+1.9
2,764,199	-		DDA3937_RS12165	0.22	+1.2
2,764,253	+		DDA3937_RS12165	0.25	+1.6
2,764,254	-		DDA3937_RS12165	0.25	+0.7
2,764,254	-		DDA3937_RS12165	0.25	+0.1
2,764,276	+		DDA3937_RS12165	0.27	+0.7
2,764,277	-		DDA3937_RS12165	0.27	-0.9
2,764,277	-		DDA3937_RS12165	0.27	-0.9
2,764,449	-		DDA3937_RS12165	0.38	-0.3
2,764,451	-		DDA3937_RS12165	0.38	-1.1
2,764,451	-		DDA3937_RS12165	0.38	-1.3
2,764,465	+		DDA3937_RS12165	0.39	-1.3
2,764,466	-				+2.2
2,764,466	-		DDA3937_RS12165	0.39	-0.8
2,764,466	-		DDA3937_RS12165	0.39	+2.1
2,764,466	-		DDA3937_RS12165	0.39	-0.6
2,764,497	+		DDA3937_RS12165	0.41	+0.6
2,764,498	-		DDA3937_RS12165	0.41	-1.3
2,764,498	-		DDA3937_RS12165	0.41	-1.8
2,764,553	-		DDA3937_RS12165	0.44	-0.8
2,764,584	-		DDA3937_RS12165	0.46	+0.1
2,764,751	-		DDA3937_RS12165	0.57	-0.5
2,765,038	+		DDA3937_RS12165	0.76	-1.3
2,765,038	+		DDA3937_RS12165	0.76	+0.2
2,765,039	-		DDA3937_RS12165	0.76	-0.0
2,765,039	-		DDA3937_RS12165	0.76	-1.3
2,765,039	-		DDA3937_RS12165	0.76	+1.0
2,765,233	+		DDA3937_RS12165	0.88	+0.2
2,765,309	-				-0.6
2,765,309	-				+0.4
2,765,400	+				-0.3
2,765,474	+				-0.9
2,765,474	+				-0.0
2,765,474	+				-1.2
2,765,474	+				-1.6
2,765,474	+				-0.2
2,765,475	-				-1.8
2,765,475	-				-0.7
2,765,475	-				+0.8
2,765,475	-				-1.7
2,765,543	+		DDA3937_RS12170	0.22	+0.2
2,765,544	-		DDA3937_RS12170	0.22	+0.8
2,765,545	+		DDA3937_RS12170	0.22	+0.4
2,765,623	+		DDA3937_RS12170	0.48	-0.5
2,765,843	+				+0.8
2,765,942	+				-2.2
2,765,942	+				-0.4
2,765,943	-				-0.5
2,765,943	-				+2.5
2,765,943	-				-0.3
2,765,943	-				-1.5
2,765,943	-				-0.9
2,765,943	-				+1.9
2,765,943	-				-0.8
2,765,951	+				+0.7
2,765,953	+				+4.4
2,765,953	+				+1.4
2,765,953	+				-1.9
2,765,954	-				-0.9
2,765,954	-				+1.2
2,765,954	-				-0.3
2,765,954	-				-0.3
2,765,969	+				-0.1
2,765,969	+				-2.3
2,765,973	-				-2.9
2,766,006	+				-1.0
2,766,006	+				+0.9
2,766,007	-				-1.1
2,766,009	+				-0.5
2,766,009	+				+0.5
2,766,009	+				+0.2
2,766,010	-				-0.8
2,766,010	-				-0.8
2,766,010	-				+0.5
2,766,012	+				-1.1
2,766,012	+				-1.1
2,766,013	-				-1.8
2,766,030	-				+1.5
2,766,044	-				-1.6
2,766,083	+				+1.8
2,766,083	+				-0.8
2,766,084	-				+0.6
2,766,084	-				-1.2
2,766,137	-				-0.9
2,766,151	+				-0.3
2,766,152	-				+1.5
2,766,152	-				-0.9
2,766,152	-				-1.2
2,766,152	-				+0.2
2,766,196	+				+2.5
2,766,196	+				-0.8
2,766,196	+				-1.2
2,766,196	+				-1.9
2,766,197	-		DDA3937_RS12175	0.10	-0.1
2,766,197	-		DDA3937_RS12175	0.10	-0.3
2,766,198	+		DDA3937_RS12175	0.10	-0.6
2,766,198	+		DDA3937_RS12175	0.10	-0.2
2,766,198	+		DDA3937_RS12175	0.10	-1.1
2,766,198	+		DDA3937_RS12175	0.10	-0.8
2,766,198	+		DDA3937_RS12175	0.10	-0.1
2,766,198	+		DDA3937_RS12175	0.10	+1.2
2,766,198	+		DDA3937_RS12175	0.10	-0.3
2,766,199	-		DDA3937_RS12175	0.10	+0.5
2,766,199	-		DDA3937_RS12175	0.10	-0.1
2,766,199	-		DDA3937_RS12175	0.10	-0.6
2,766,199	-		DDA3937_RS12175	0.10	-1.3
2,766,199	-		DDA3937_RS12175	0.10	-1.6
2,766,199	-		DDA3937_RS12175	0.10	-1.1
2,766,199	-		DDA3937_RS12175	0.10	+3.2
2,766,199	-		DDA3937_RS12175	0.10	-0.6
2,766,238	+				+0.2
2,766,357	+		DDA3937_RS12175	0.33	-1.6
2,766,358	-		DDA3937_RS12175	0.33	-0.7
2,766,409	+		DDA3937_RS12175	0.41	-1.3
2,766,409	+		DDA3937_RS12175	0.41	-0.1
2,766,410	-		DDA3937_RS12175	0.41	-1.0