Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10325

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,325,460	+				+0.7
2,325,493	+		DDA3937_RS10315	0.12	-1.0
2,325,493	+		DDA3937_RS10315	0.12	+0.7
2,325,575	+		DDA3937_RS10315	0.25	-0.3
2,325,605	+		DDA3937_RS10315	0.30	+2.2
2,325,606	-		DDA3937_RS10315	0.30	-1.2
2,325,607	+		DDA3937_RS10315	0.30	-1.4
2,325,608	-		DDA3937_RS10315	0.30	-0.3
2,325,787	+		DDA3937_RS10315	0.59	-0.7
2,326,013	+				+0.4
2,326,014	-				-0.8
2,326,014	-				+1.2
2,326,016	-				+0.2
2,326,037	+				-1.2
2,326,037	+				+0.6
2,326,062	+				-2.0
2,326,062	+				-2.0
2,326,062	+				+1.2
2,326,063	-				-0.4
2,326,063	-				+0.3
2,326,063	-				-0.3
2,326,063	-				+2.0
2,326,064	+				+0.5
2,326,064	+				-1.5
2,326,065	-				-0.4
2,326,071	-				-0.2
2,326,071	-				+0.0
2,326,080	+				-0.1
2,326,080	+				-0.8
2,326,081	-				+1.1
2,326,204	-				-0.1
2,326,204	-				-1.2
2,326,204	-				+0.2
2,326,204	-				-2.8
2,326,204	-				+3.0
2,326,204	-				+0.2
2,326,411	+				+2.5
2,326,425	+				-0.3
2,326,426	-				+0.6
2,326,426	-				-0.6
2,326,426	-				+0.6
2,326,431	+				-2.0
2,326,507	+				+0.2
2,326,507	+				-0.8
2,326,508	-				-0.7
2,326,508	-				-1.7
2,326,515	-				-0.8
2,326,580	+		DDA3937_RS10325	0.15	-2.1
2,326,581	-		DDA3937_RS10325	0.15	-1.9
2,326,581	-		DDA3937_RS10325	0.15	-1.7
2,326,581	-		DDA3937_RS10325	0.15	-1.2
2,326,581	-		DDA3937_RS10325	0.15	+1.3
2,326,581	-		DDA3937_RS10325	0.15	-2.4
2,326,581	-		DDA3937_RS10325	0.15	-0.2
2,326,581	-		DDA3937_RS10325	0.15	-2.7
2,326,581	-		DDA3937_RS10325	0.15	-1.7
2,326,581	-		DDA3937_RS10325	0.15	-2.8
2,326,584	+		DDA3937_RS10325	0.15	-1.4
2,326,584	+		DDA3937_RS10325	0.15	-2.2
2,326,585	-		DDA3937_RS10325	0.15	-3.4
2,326,646	+		DDA3937_RS10325	0.22	-1.7
2,326,646	+		DDA3937_RS10325	0.22	-1.8
2,326,647	-		DDA3937_RS10325	0.22	-0.3
2,326,686	-		DDA3937_RS10325	0.27	-1.7
2,326,686	-		DDA3937_RS10325	0.27	-0.8
2,326,747	-		DDA3937_RS10325	0.34	-2.3
2,326,747	-		DDA3937_RS10325	0.34	-1.8
2,326,761	-		DDA3937_RS10325	0.36	-2.3
2,326,796	+		DDA3937_RS10325	0.40	-2.0
2,326,796	+		DDA3937_RS10325	0.40	-1.1
2,326,797	-		DDA3937_RS10325	0.40	-0.4
2,326,797	-		DDA3937_RS10325	0.40	+0.6
2,326,814	+		DDA3937_RS10325	0.42	-2.3
2,326,815	-				-0.4
2,326,815	-		DDA3937_RS10325	0.42	-0.8
2,326,815	-		DDA3937_RS10325	0.42	-2.7
2,326,815	-		DDA3937_RS10325	0.42	-2.8
2,326,815	-		DDA3937_RS10325	0.42	-0.1
2,326,815	-		DDA3937_RS10325	0.42	+0.2
2,326,824	+		DDA3937_RS10325	0.43	-2.0
2,326,824	+		DDA3937_RS10325	0.43	-1.2
2,326,825	-		DDA3937_RS10325	0.43	-1.3
2,326,827	-		DDA3937_RS10325	0.44	-1.7
2,326,918	+		DDA3937_RS10325	0.54	-0.0
2,327,133	+		DDA3937_RS10325	0.79	-2.6
2,327,133	+		DDA3937_RS10325	0.79	-2.9
2,327,134	-		DDA3937_RS10325	0.80	-1.5
2,327,134	-		DDA3937_RS10325	0.80	-0.4
2,327,183	+		DDA3937_RS10325	0.85	-2.2
2,327,183	+		DDA3937_RS10325	0.85	-2.2
2,327,183	+		DDA3937_RS10325	0.85	+0.2
2,327,184	-		DDA3937_RS10325	0.85	-1.4
2,327,184	-		DDA3937_RS10325	0.85	-1.3
2,327,184	-		DDA3937_RS10325	0.85	-2.4
2,327,184	-		DDA3937_RS10325	0.85	-1.7
2,327,184	-		DDA3937_RS10325	0.85	-2.0
2,327,184	-		DDA3937_RS10325	0.85	-0.7
2,327,202	+		DDA3937_RS10325	0.88	-1.8
2,327,275	+				-0.3
2,327,385	+				-1.7
2,327,385	+				-1.4
2,327,385	+				-2.2
2,327,386	-				-0.6
2,327,386	-				-2.3
2,327,388	+				+0.3
2,327,388	+				-2.5
2,327,388	+				-1.8
2,327,388	+				-1.4
2,327,389	-				-2.0
2,327,475	+		DDA3937_RS10330	0.19	-1.2
2,327,475	+		DDA3937_RS10330	0.19	-1.2
2,327,475	+		DDA3937_RS10330	0.19	-2.4
2,327,475	+		DDA3937_RS10330	0.19	-1.0
2,327,476	-		DDA3937_RS10330	0.19	-1.1
2,327,476	-		DDA3937_RS10330	0.19	+0.1
2,327,476	-		DDA3937_RS10330	0.19	-0.8
2,327,476	-		DDA3937_RS10330	0.19	-0.7
2,327,476	-		DDA3937_RS10330	0.19	-0.4
2,327,476	-				+1.2
2,327,476	-		DDA3937_RS10330	0.19	-1.0
2,327,476	-		DDA3937_RS10330	0.19	+0.0
2,327,476	-		DDA3937_RS10330	0.19	-1.8
2,327,476	-		DDA3937_RS10330	0.19	+0.5
2,327,478	+		DDA3937_RS10330	0.19	-0.8
2,327,478	+		DDA3937_RS10330	0.19	-0.3
2,327,479	-		DDA3937_RS10330	0.20	-0.4
2,327,479	-		DDA3937_RS10330	0.20	-2.3
2,327,479	-		DDA3937_RS10330	0.20	-1.3
2,327,556	+				-0.2
2,327,577	+		DDA3937_RS10330	0.41	-0.8
2,327,712	+				+1.2
2,327,857	+				+1.0
2,327,857	+				+0.2
2,327,858	-				-2.5
2,327,858	-				+0.6
2,327,858	-				-1.5
2,327,858	-				-2.3
2,327,880	-				+0.5
2,327,886	-				+1.2
2,327,889	+				-0.4
2,327,890	-				-1.1
2,327,890	-				+1.2
2,327,890	-				+0.3
2,327,920	-				-2.5
2,327,920	-				-1.4
2,327,951	-				+1.2
2,327,967	+				+4.5
2,327,967	+				+0.2
2,327,968	-				-0.1
2,327,968	-				-0.1
2,327,968	-				-1.2
2,327,968	-				-4.0
2,327,971	+				-1.2
2,327,972	-				-0.3
2,327,990	-				+3.6
2,327,994	+				+1.2
2,327,995	-				-1.4
2,327,995	-				-1.4
2,328,020	-				-1.2
2,328,020	-				+1.2
2,328,033	+				-0.2
2,328,034	-				-1.9
2,328,034	-				+1.2
2,328,038	-				-0.7
2,328,038	-				-0.5
2,328,038	-				-0.7
2,328,038	-				-1.2
2,328,170	+		DDA3937_RS10335	0.16	-0.2
2,328,193	+		DDA3937_RS10335	0.19	+1.2
2,328,194	-		DDA3937_RS10335	0.19	+1.2
2,328,194	-		DDA3937_RS10335	0.19	-2.3
2,328,300	+		DDA3937_RS10335	0.31	-0.6
2,328,300	+		DDA3937_RS10335	0.31	+0.2
2,328,300	+		DDA3937_RS10335	0.31	+0.5
2,328,300	+		DDA3937_RS10335	0.31	-1.0
2,328,300	+		DDA3937_RS10335	0.31	+0.4
2,328,300	+		DDA3937_RS10335	0.31	+1.2
2,328,300	+		DDA3937_RS10335	0.31	+1.6
2,328,301	-		DDA3937_RS10335	0.31	+1.3
2,328,301	-		DDA3937_RS10335	0.31	-1.2
2,328,301	-		DDA3937_RS10335	0.31	-0.8
2,328,301	-		DDA3937_RS10335	0.31	-0.6
2,328,301	-		DDA3937_RS10335	0.31	-1.3