Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09340

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09335 and DDA3937_RS09340 are separated by 597 nucleotidesDDA3937_RS09340 and DDA3937_RS09345 are separated by 354 nucleotides DDA3937_RS09335: DDA3937_RS09335 - Tar ligand binding domain-containing protein, at 2,099,504 to 2,101,129 _RS09335 DDA3937_RS09340: DDA3937_RS09340 - IS110-like element ISEch3 family transposase, at 2,101,727 to 2,102,746 _RS09340 DDA3937_RS09345: DDA3937_RS09345 - IS200/IS605 family transposase, at 2,103,101 to 2,103,559 _RS09345 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2100.832 kb on + strand, within DDA3937_RS09335at 2100.832 kb on + strand, within DDA3937_RS09335at 2100.833 kb on - strand, within DDA3937_RS09335at 2100.833 kb on - strand, within DDA3937_RS09335at 2100.836 kb on - strand, within DDA3937_RS09335at 2101.133 kb on + strandat 2101.133 kb on + strandat 2101.134 kb on - strandat 2101.179 kb on + strandat 2101.179 kb on + strandat 2101.179 kb on + strandat 2101.179 kb on + strandat 2101.180 kb on - strandat 2101.182 kb on + strandat 2101.183 kb on - strandat 2101.264 kb on + strandat 2101.264 kb on + strandat 2101.264 kb on + strandat 2102.905 kb on + strandat 2102.905 kb on + strandat 2102.905 kb on + strandat 2102.905 kb on + strandat 2102.964 kb on - strandat 2102.979 kb on - strandat 2102.979 kb on - strandat 2103.189 kb on - strand, within DDA3937_RS09345at 2103.650 kb on + strandat 2103.662 kb on + strandat 2103.662 kb on + strandat 2103.666 kb on + strandat 2103.666 kb on + strandat 2103.690 kb on + strandat 2103.690 kb on + strandat 2103.690 kb on + strandat 2103.691 kb on - strandat 2103.691 kb on - strandat 2103.691 kb on - strandat 2103.691 kb on - strandat 2103.691 kb on - strandat 2103.691 kb on - strandat 2103.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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2,100,832 + DDA3937_RS09335 0.82 +1.2
2,100,832 + DDA3937_RS09335 0.82 -2.3
2,100,833 - DDA3937_RS09335 0.82 -1.7
2,100,833 - DDA3937_RS09335 0.82 -0.0
2,100,836 - DDA3937_RS09335 0.82 +1.2
2,101,133 + -0.0
2,101,133 + +0.3
2,101,134 - -0.1
2,101,179 + +0.3
2,101,179 + -3.3
2,101,179 + +1.9
2,101,179 + -1.0
2,101,180 - -0.4
2,101,182 + -0.2
2,101,183 - -0.8
2,101,264 + -0.1
2,101,264 + -1.9
2,101,264 + -0.1
2,102,905 + +1.0
2,102,905 + -2.3
2,102,905 + -0.1
2,102,905 + -1.1
2,102,964 - +0.2
2,102,979 - +1.9
2,102,979 - +0.4
2,103,189 - DDA3937_RS09345 0.19 -0.5
2,103,650 + +0.2
2,103,662 + +1.8
2,103,662 + -2.3
2,103,666 + -0.0
2,103,666 + -0.4
2,103,690 + -1.1
2,103,690 + +2.3
2,103,690 + -0.8
2,103,691 - -0.8
2,103,691 - +1.8
2,103,691 - -0.9
2,103,691 - -2.0
2,103,691 - -0.5
2,103,691 - -1.4
2,103,691 - -1.1

Or see this region's nucleotide sequence