Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09335 and DDA3937_RS09340 are separated by 597 nucleotides DDA3937_RS09340 and DDA3937_RS09345 are separated by 354 nucleotides
DDA3937_RS09335: DDA3937_RS09335 - Tar ligand binding domain-containing protein, at 2,099,504 to 2,101,129
_RS09335
DDA3937_RS09340: DDA3937_RS09340 - IS110-like element ISEch3 family transposase, at 2,101,727 to 2,102,746
_RS09340
DDA3937_RS09345: DDA3937_RS09345 - IS200/IS605 family transposase, at 2,103,101 to 2,103,559
_RS09345
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2100.832 kb on + strand, within DDA3937_RS09335 at 2100.832 kb on + strand, within DDA3937_RS09335 at 2100.833 kb on - strand, within DDA3937_RS09335 at 2100.833 kb on - strand, within DDA3937_RS09335 at 2100.836 kb on - strand, within DDA3937_RS09335 at 2101.133 kb on + strand at 2101.133 kb on + strand at 2101.134 kb on - strand at 2101.179 kb on + strand at 2101.179 kb on + strand at 2101.179 kb on + strand at 2101.179 kb on + strand at 2101.180 kb on - strand at 2101.182 kb on + strand at 2101.183 kb on - strand at 2101.264 kb on + strand at 2101.264 kb on + strand at 2101.264 kb on + strand at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.964 kb on - strand at 2102.979 kb on - strand at 2102.979 kb on - strand at 2103.189 kb on - strand, within DDA3937_RS09345 at 2103.650 kb on + strand at 2103.662 kb on + strand at 2103.662 kb on + strand at 2103.666 kb on + strand at 2103.666 kb on + strand at 2103.690 kb on + strand at 2103.690 kb on + strand at 2103.690 kb on + strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,100,832 + DDA3937_RS09335 0.82 +1.2 2,100,832 + DDA3937_RS09335 0.82 -2.3 2,100,833 - DDA3937_RS09335 0.82 -1.7 2,100,833 - DDA3937_RS09335 0.82 -0.0 2,100,836 - DDA3937_RS09335 0.82 +1.2 2,101,133 + -0.0 2,101,133 + +0.3 2,101,134 - -0.1 2,101,179 + +0.3 2,101,179 + -3.3 2,101,179 + +1.9 2,101,179 + -1.0 2,101,180 - -0.4 2,101,182 + -0.2 2,101,183 - -0.8 2,101,264 + -0.1 2,101,264 + -1.9 2,101,264 + -0.1 2,102,905 + +1.0 2,102,905 + -2.3 2,102,905 + -0.1 2,102,905 + -1.1 2,102,964 - +0.2 2,102,979 - +1.9 2,102,979 - +0.4 2,103,189 - DDA3937_RS09345 0.19 -0.5 2,103,650 + +0.2 2,103,662 + +1.8 2,103,662 + -2.3 2,103,666 + -0.0 2,103,666 + -0.4 2,103,690 + -1.1 2,103,690 + +2.3 2,103,690 + -0.8 2,103,691 - -0.8 2,103,691 - +1.8 2,103,691 - -0.9 2,103,691 - -2.0 2,103,691 - -0.5 2,103,691 - -1.4 2,103,691 - -1.1
Or see this region's nucleotide sequence