Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08715

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,967,019	+		DDA3937_RS08710	0.54	+1.7
1,967,019	+		DDA3937_RS08710	0.54	+0.5
1,967,172	-				+0.3
1,967,206	+		DDA3937_RS08710	0.65	-1.9
1,967,206	+		DDA3937_RS08710	0.65	-0.7
1,967,207	-		DDA3937_RS08710	0.65	-0.8
1,967,299	+		DDA3937_RS08710	0.71	+1.2
1,967,299	+		DDA3937_RS08710	0.71	-2.7
1,967,300	-		DDA3937_RS08710	0.71	-1.3
1,967,300	-		DDA3937_RS08710	0.71	-1.3
1,967,300	-		DDA3937_RS08710	0.71	-1.7
1,967,301	+		DDA3937_RS08710	0.71	+1.7
1,967,301	+		DDA3937_RS08710	0.71	-1.9
1,967,302	-		DDA3937_RS08710	0.71	-0.5
1,967,302	-		DDA3937_RS08710	0.71	+0.2
1,967,302	-		DDA3937_RS08710	0.71	+0.3
1,967,360	+		DDA3937_RS08710	0.75	+0.2
1,967,361	-		DDA3937_RS08710	0.75	-2.0
1,967,370	+		DDA3937_RS08710	0.76	-0.3
1,967,371	-		DDA3937_RS08710	0.76	+1.3
1,967,371	-		DDA3937_RS08710	0.76	-0.3
1,967,381	-		DDA3937_RS08710	0.76	-0.5
1,967,381	-		DDA3937_RS08710	0.76	-0.1
1,967,381	-		DDA3937_RS08710	0.76	-2.2
1,967,381	-		DDA3937_RS08710	0.76	-1.2
1,967,396	-		DDA3937_RS08710	0.77	-3.1
1,967,490	+		DDA3937_RS08710	0.83	-1.0
1,967,490	+		DDA3937_RS08710	0.83	+0.0
1,967,496	+		DDA3937_RS08710	0.84	-1.6
1,967,496	+		DDA3937_RS08710	0.84	-1.2
1,967,497	-		DDA3937_RS08710	0.84	-1.3
1,967,497	-		DDA3937_RS08710	0.84	+0.2
1,967,497	-		DDA3937_RS08710	0.84	-1.7
1,967,497	-		DDA3937_RS08710	0.84	-0.7
1,967,497	-		DDA3937_RS08710	0.84	-1.3
1,967,550	+		DDA3937_RS08710	0.87	+0.5
1,967,603	+				+1.0
1,967,604	-				-1.3
1,967,606	-				+0.3
1,967,701	+				-1.4
1,967,755	+				-1.1
1,967,756	-				+0.5
1,967,756	-				-0.1
1,967,808	+				-0.6
1,967,808	+				-1.1
1,967,888	+				-0.0
1,967,888	+				+3.3
1,967,889	-				+0.9
1,967,889	-				-1.1
1,967,923	-				-1.3
1,967,933	+				+1.2
1,967,933	+				-2.1
1,967,998	+				-1.7
1,968,097	-		DDA3937_RS08715	0.19	-0.5
1,968,205	-				+0.3
1,968,205	-		DDA3937_RS08715	0.30	+0.2
1,968,559	-		DDA3937_RS08715	0.68	+0.9
1,968,559	-		DDA3937_RS08715	0.68	-1.5
1,968,585	-		DDA3937_RS08715	0.71	-0.4
1,968,638	-		DDA3937_RS08715	0.76	+0.7
1,968,638	-		DDA3937_RS08715	0.76	+0.3
1,968,651	+		DDA3937_RS08715	0.78	+2.2
1,968,652	-		DDA3937_RS08715	0.78	+0.3
1,968,688	+		DDA3937_RS08715	0.82	+3.7
1,968,688	+		DDA3937_RS08715	0.82	+3.0
1,968,689	-		DDA3937_RS08715	0.82	-1.1
1,968,724	+		DDA3937_RS08715	0.86	-0.0
1,968,724	+		DDA3937_RS08715	0.86	+1.7
1,968,724	+		DDA3937_RS08715	0.86	+4.3
1,968,725	-		DDA3937_RS08715	0.86	-2.3
1,968,725	-		DDA3937_RS08715	0.86	-0.5
1,968,725	-		DDA3937_RS08715	0.86	+0.3
1,968,725	-				+1.3
1,968,725	-		DDA3937_RS08715	0.86	-0.6
1,968,739	-		DDA3937_RS08715	0.87	-0.3
1,968,758	-		DDA3937_RS08715	0.89	-1.4
1,968,758	-		DDA3937_RS08715	0.89	-1.1
1,968,817	-				-0.1
1,968,947	-				+1.3
1,969,030	+				-0.7
1,969,030	+				+1.3
1,969,030	+				+1.5
1,969,030	+				+1.0
1,969,030	+				-0.4
1,969,030	+				-0.4
1,969,043	+		DDA3937_RS23125	0.14	-0.5
1,969,043	+		DDA3937_RS23125	0.14	-1.3
1,969,043	+		DDA3937_RS23125	0.14	-0.6
1,969,043	+		DDA3937_RS23125	0.14	+1.3
1,969,043	+		DDA3937_RS23125	0.14	+1.7
1,969,043	+		DDA3937_RS23125	0.14	+0.6
1,969,043	+		DDA3937_RS23125	0.14	-1.7
1,969,044	-		DDA3937_RS23125	0.14	+1.0
1,969,044	-		DDA3937_RS23125	0.14	-1.1
1,969,044	-		DDA3937_RS23125	0.14	+0.9
1,969,044	-		DDA3937_RS23125	0.14	+0.6
1,969,047	+		DDA3937_RS23125	0.15	-0.4
1,969,047	+		DDA3937_RS23125	0.15	+0.5
1,969,047	+		DDA3937_RS23125	0.15	+0.7
1,969,047	+		DDA3937_RS23125	0.15	+0.5
1,969,048	-		DDA3937_RS23125	0.15	-1.3
1,969,048	-		DDA3937_RS23125	0.15	+0.5
1,969,048	-		DDA3937_RS23125	0.15	-0.1
1,969,048	-		DDA3937_RS23125	0.15	-0.3
1,969,048	-		DDA3937_RS23125	0.15	+1.9
1,969,048	-		DDA3937_RS23125	0.15	+0.3
1,969,048	-		DDA3937_RS23125	0.15	-0.3
1,969,049	+		DDA3937_RS23125	0.15	+1.4
1,969,049	+		DDA3937_RS23125	0.15	-0.1
1,969,049	+		DDA3937_RS23125	0.15	+2.5
1,969,049	+		DDA3937_RS23125	0.15	-0.3
1,969,049	+		DDA3937_RS23125	0.15	+0.4
1,969,049	+		DDA3937_RS23125	0.15	+0.4
1,969,049	+		DDA3937_RS23125	0.15	-0.3
1,969,049	+		DDA3937_RS23125	0.15	-0.1
1,969,049	+		DDA3937_RS23125	0.15	+1.4
1,969,050	-		DDA3937_RS23125	0.16	+1.3
1,969,050	-		DDA3937_RS23125	0.16	-0.1
1,969,050	-		DDA3937_RS23125	0.16	-0.8
1,969,050	-		DDA3937_RS23125	0.16	-1.8
1,969,050	-		DDA3937_RS23125	0.16	-1.2
1,969,050	-		DDA3937_RS23125	0.16	-1.1
1,969,050	-		DDA3937_RS23125	0.16	+1.3
1,969,050	-		DDA3937_RS23125	0.16	-0.7
1,969,050	-		DDA3937_RS23125	0.16	-0.9
1,969,050	-		DDA3937_RS23125	0.16	+1.6
1,969,050	-		DDA3937_RS23125	0.16	-0.6
1,969,050	-		DDA3937_RS23125	0.16	+0.3
1,969,050	-		DDA3937_RS23125	0.16	+0.5
1,969,050	-		DDA3937_RS23125	0.16	-2.5
1,969,076	+		DDA3937_RS23125	0.23	+1.1
1,969,076	+		DDA3937_RS23125	0.23	-2.1
1,969,076	+		DDA3937_RS23125	0.23	+0.2
1,969,077	-		DDA3937_RS23125	0.24	-3.1
1,969,080	-		DDA3937_RS23125	0.24	+1.3
1,969,096	-		DDA3937_RS23125	0.29	-1.1
1,969,112	-		DDA3937_RS23125	0.34	+1.0
1,969,295	+		DDA3937_RS23125	0.88	-0.8
1,969,295	+		DDA3937_RS23125	0.88	-0.7
1,969,295	+		DDA3937_RS23125	0.88	+0.8
1,969,295	+		DDA3937_RS23125	0.88	-2.1
1,969,295	+		DDA3937_RS23125	0.88	-0.1
1,969,295	+		DDA3937_RS23125	0.88	-0.9
1,969,295	+		DDA3937_RS23125	0.88	-1.1
1,969,296	-		DDA3937_RS23125	0.88	-0.5
1,969,296	-		DDA3937_RS23125	0.88	-1.0
1,969,296	-		DDA3937_RS23125	0.88	+1.3
1,969,296	-		DDA3937_RS23125	0.88	-0.4
1,969,296	-		DDA3937_RS23125	0.88	-1.1
1,969,296	-		DDA3937_RS23125	0.88	-0.3
1,969,296	-		DDA3937_RS23125	0.88	+1.0
1,969,296	-		DDA3937_RS23125	0.88	-0.7
1,969,296	-		DDA3937_RS23125	0.88	-1.1
1,969,296	-		DDA3937_RS23125	0.88	+2.0
1,969,312	+				+0.3
1,969,330	+				+4.5
1,969,330	+				-0.0
1,969,330	+				+2.7
1,969,330	+				+0.7
1,969,331	-				-0.7
1,969,331	-				-2.3
1,969,447	+				+4.0
1,969,479	+				+3.5
1,969,480	-				-0.9
1,969,514	+				+2.5
1,969,528	-				-0.7
1,969,539	+				+0.4
1,969,539	+				+0.2
1,969,540	-				-0.7
1,969,580	+				+1.2
1,969,646	+				-0.5
1,969,646	+				+0.5
1,969,646	+				-0.2
1,969,646	+				-1.9
1,969,646	+				-1.2
1,969,647	-				-1.8
1,969,669	+				-1.3
1,969,678	+		DDA3937_RS08725	0.10	-0.3
1,969,702	-		DDA3937_RS08725	0.15	-1.3
1,969,738	+		DDA3937_RS08725	0.21	-1.1
1,969,738	+		DDA3937_RS08725	0.21	-0.6
1,969,754	+		DDA3937_RS08725	0.24	-0.2
1,969,792	+		DDA3937_RS08725	0.31	-2.3
1,969,792	+		DDA3937_RS08725	0.31	-0.2
1,969,793	-		DDA3937_RS08725	0.32	-0.4
1,969,803	+		DDA3937_RS08725	0.34	-1.5
1,969,803	+		DDA3937_RS08725	0.34	+0.7
1,969,807	-		DDA3937_RS08725	0.34	-0.2
1,969,807	-		DDA3937_RS08725	0.34	-0.7
1,969,845	+		DDA3937_RS08725	0.41	-1.4
1,969,846	-		DDA3937_RS08725	0.41	+0.1