Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07285 and DDA3937_RS07290 are separated by 2 nucleotides DDA3937_RS07290 and DDA3937_RS07295 are separated by 6 nucleotides DDA3937_RS07295 and DDA3937_RS07300 are separated by 3 nucleotides DDA3937_RS07300 and DDA3937_RS07305 are separated by 206 nucleotides
DDA3937_RS07285: DDA3937_RS07285 - ABC transporter permease subunit, at 1,644,194 to 1,645,126
_RS07285
DDA3937_RS07290: DDA3937_RS07290 - ABC transporter permease subunit, at 1,645,129 to 1,646,028
_RS07290
DDA3937_RS07295: DDA3937_RS07295 - ABC transporter ATP-binding protein, at 1,646,035 to 1,646,847
_RS07295
DDA3937_RS07300: DDA3937_RS07300 - ABC transporter ATP-binding protein, at 1,646,851 to 1,647,612
_RS07300
DDA3937_RS07305: DDA3937_RS07305 - MarR family transcriptional regulator, at 1,647,819 to 1,648,289
_RS07305
Position (kb) 1646
1647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1645.124 kb on + strand at 1645.128 kb on + strand at 1645.128 kb on + strand at 1645.128 kb on + strand at 1645.129 kb on - strand at 1645.129 kb on - strand at 1645.129 kb on - strand at 1645.129 kb on - strand at 1645.129 kb on - strand at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.229 kb on - strand, within DDA3937_RS07290 at 1645.231 kb on - strand, within DDA3937_RS07290 at 1645.231 kb on - strand, within DDA3937_RS07290 at 1645.231 kb on - strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.269 kb on + strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.270 kb on - strand, within DDA3937_RS07290 at 1645.273 kb on + strand, within DDA3937_RS07290 at 1645.273 kb on + strand, within DDA3937_RS07290 at 1645.273 kb on + strand, within DDA3937_RS07290 at 1645.273 kb on + strand at 1645.273 kb on + strand, within DDA3937_RS07290 at 1645.274 kb on - strand, within DDA3937_RS07290 at 1645.274 kb on - strand, within DDA3937_RS07290 at 1645.370 kb on - strand, within DDA3937_RS07290 at 1645.371 kb on + strand, within DDA3937_RS07290 at 1645.371 kb on + strand, within DDA3937_RS07290 at 1645.372 kb on - strand, within DDA3937_RS07290 at 1645.433 kb on - strand, within DDA3937_RS07290 at 1645.460 kb on + strand, within DDA3937_RS07290 at 1645.460 kb on + strand, within DDA3937_RS07290 at 1645.548 kb on + strand, within DDA3937_RS07290 at 1645.548 kb on + strand, within DDA3937_RS07290 at 1645.549 kb on - strand at 1645.549 kb on - strand, within DDA3937_RS07290 at 1645.626 kb on + strand, within DDA3937_RS07290 at 1645.650 kb on + strand, within DDA3937_RS07290 at 1645.651 kb on - strand, within DDA3937_RS07290 at 1645.653 kb on + strand, within DDA3937_RS07290 at 1645.672 kb on + strand, within DDA3937_RS07290 at 1645.673 kb on - strand, within DDA3937_RS07290 at 1645.673 kb on - strand, within DDA3937_RS07290 at 1645.673 kb on - strand, within DDA3937_RS07290 at 1645.719 kb on + strand, within DDA3937_RS07290 at 1645.720 kb on - strand, within DDA3937_RS07290 at 1645.751 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.818 kb on + strand, within DDA3937_RS07290 at 1645.819 kb on - strand, within DDA3937_RS07290 at 1645.819 kb on - strand, within DDA3937_RS07290 at 1645.819 kb on - strand, within DDA3937_RS07290 at 1645.819 kb on - strand, within DDA3937_RS07290 at 1645.955 kb on - strand at 1645.983 kb on + strand at 1645.984 kb on - strand at 1645.990 kb on + strand at 1645.990 kb on + strand at 1645.991 kb on - strand at 1645.991 kb on - strand at 1645.991 kb on - strand at 1645.991 kb on - strand at 1646.001 kb on + strand at 1646.008 kb on + strand at 1646.008 kb on + strand at 1646.008 kb on + strand at 1646.009 kb on - strand at 1646.026 kb on + strand at 1646.027 kb on - strand at 1646.027 kb on - strand at 1646.027 kb on - strand at 1646.062 kb on - strand at 1646.112 kb on + strand at 1646.113 kb on - strand at 1646.115 kb on + strand at 1646.115 kb on + strand at 1646.116 kb on - strand at 1646.116 kb on - strand at 1646.142 kb on + strand, within DDA3937_RS07295 at 1646.143 kb on - strand, within DDA3937_RS07295 at 1646.143 kb on - strand, within DDA3937_RS07295 at 1646.143 kb on - strand, within DDA3937_RS07295 at 1646.143 kb on - strand, within DDA3937_RS07295 at 1646.187 kb on + strand, within DDA3937_RS07295 at 1646.188 kb on - strand, within DDA3937_RS07295 at 1646.289 kb on + strand, within DDA3937_RS07295 at 1646.290 kb on - strand, within DDA3937_RS07295 at 1646.312 kb on + strand, within DDA3937_RS07295 at 1646.313 kb on - strand, within DDA3937_RS07295 at 1646.313 kb on - strand, within DDA3937_RS07295 at 1646.350 kb on + strand, within DDA3937_RS07295 at 1646.350 kb on + strand, within DDA3937_RS07295 at 1646.350 kb on + strand, within DDA3937_RS07295 at 1646.351 kb on - strand, within DDA3937_RS07295 at 1646.351 kb on - strand, within DDA3937_RS07295 at 1646.352 kb on + strand at 1646.352 kb on + strand, within DDA3937_RS07295 at 1646.403 kb on + strand, within DDA3937_RS07295 at 1646.428 kb on - strand, within DDA3937_RS07295 at 1646.595 kb on + strand, within DDA3937_RS07295 at 1646.603 kb on - strand, within DDA3937_RS07295 at 1646.701 kb on + strand, within DDA3937_RS07295 at 1646.702 kb on - strand, within DDA3937_RS07295 at 1646.702 kb on - strand, within DDA3937_RS07295 at 1646.702 kb on - strand, within DDA3937_RS07295 at 1646.702 kb on - strand, within DDA3937_RS07295 at 1646.779 kb on + strand at 1646.780 kb on - strand at 1646.780 kb on - strand at 1646.781 kb on + strand at 1646.782 kb on - strand at 1646.782 kb on - strand at 1646.813 kb on + strand at 1646.813 kb on + strand at 1646.813 kb on + strand at 1646.814 kb on - strand at 1646.814 kb on - strand at 1646.819 kb on + strand at 1646.820 kb on - strand at 1646.820 kb on - strand at 1646.846 kb on - strand at 1646.925 kb on + strand at 1646.925 kb on + strand at 1647.059 kb on + strand, within DDA3937_RS07300 at 1647.059 kb on + strand, within DDA3937_RS07300 at 1647.059 kb on + strand, within DDA3937_RS07300 at 1647.059 kb on + strand, within DDA3937_RS07300 at 1647.059 kb on + strand, within DDA3937_RS07300 at 1647.060 kb on - strand, within DDA3937_RS07300 at 1647.060 kb on - strand, within DDA3937_RS07300 at 1647.060 kb on - strand, within DDA3937_RS07300 at 1647.093 kb on + strand, within DDA3937_RS07300 at 1647.093 kb on + strand, within DDA3937_RS07300 at 1647.093 kb on + strand, within DDA3937_RS07300 at 1647.127 kb on + strand, within DDA3937_RS07300 at 1647.128 kb on - strand, within DDA3937_RS07300 at 1647.128 kb on - strand, within DDA3937_RS07300 at 1647.129 kb on + strand, within DDA3937_RS07300 at 1647.129 kb on + strand, within DDA3937_RS07300 at 1647.129 kb on + strand, within DDA3937_RS07300 at 1647.129 kb on + strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.130 kb on - strand, within DDA3937_RS07300 at 1647.197 kb on + strand, within DDA3937_RS07300 at 1647.198 kb on - strand, within DDA3937_RS07300 at 1647.198 kb on - strand, within DDA3937_RS07300 at 1647.237 kb on - strand, within DDA3937_RS07300 at 1647.237 kb on - strand, within DDA3937_RS07300 at 1647.266 kb on + strand, within DDA3937_RS07300 at 1647.277 kb on + strand, within DDA3937_RS07300 at 1647.277 kb on + strand, within DDA3937_RS07300 at 1647.278 kb on - strand, within DDA3937_RS07300 at 1647.318 kb on + strand, within DDA3937_RS07300 at 1647.318 kb on + strand, within DDA3937_RS07300 at 1647.319 kb on - strand, within DDA3937_RS07300 at 1647.354 kb on + strand, within DDA3937_RS07300 at 1647.354 kb on + strand, within DDA3937_RS07300 at 1647.456 kb on + strand, within DDA3937_RS07300 at 1647.456 kb on + strand, within DDA3937_RS07300 at 1647.457 kb on - strand, within DDA3937_RS07300 at 1647.457 kb on - strand, within DDA3937_RS07300 at 1647.459 kb on + strand, within DDA3937_RS07300 at 1647.459 kb on + strand, within DDA3937_RS07300 at 1647.460 kb on - strand, within DDA3937_RS07300 at 1647.468 kb on + strand, within DDA3937_RS07300 at 1647.484 kb on + strand, within DDA3937_RS07300 at 1647.484 kb on + strand, within DDA3937_RS07300 at 1647.484 kb on + strand, within DDA3937_RS07300 at 1647.525 kb on + strand, within DDA3937_RS07300 at 1647.551 kb on + strand at 1647.653 kb on + strand at 1647.731 kb on - strand at 1647.743 kb on + strand at 1647.743 kb on + strand at 1647.744 kb on - strand at 1647.744 kb on - strand at 1647.841 kb on + strand at 1647.841 kb on + strand at 1647.841 kb on + strand at 1647.842 kb on - strand at 1647.842 kb on - strand at 1647.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 1,645,124 + -1.2 1,645,128 + -2.5 1,645,128 + +3.5 1,645,128 + -2.1 1,645,129 - +4.5 1,645,129 - -0.2 1,645,129 - -0.7 1,645,129 - +1.4 1,645,129 - -0.9 1,645,229 - DDA3937_RS07290 0.11 -1.0 1,645,229 - DDA3937_RS07290 0.11 -0.2 1,645,229 - DDA3937_RS07290 0.11 -1.6 1,645,229 - DDA3937_RS07290 0.11 -1.2 1,645,229 - DDA3937_RS07290 0.11 -0.3 1,645,229 - DDA3937_RS07290 0.11 +2.5 1,645,231 - DDA3937_RS07290 0.11 -1.5 1,645,231 - DDA3937_RS07290 0.11 +0.2 1,645,231 - DDA3937_RS07290 0.11 +1.7 1,645,269 + DDA3937_RS07290 0.16 -0.6 1,645,269 + DDA3937_RS07290 0.16 +0.0 1,645,269 + DDA3937_RS07290 0.16 -0.4 1,645,269 + DDA3937_RS07290 0.16 -0.9 1,645,269 + DDA3937_RS07290 0.16 -0.0 1,645,269 + DDA3937_RS07290 0.16 -1.6 1,645,270 - DDA3937_RS07290 0.16 -0.4 1,645,270 - DDA3937_RS07290 0.16 -2.5 1,645,270 - DDA3937_RS07290 0.16 +1.6 1,645,270 - DDA3937_RS07290 0.16 -1.4 1,645,270 - DDA3937_RS07290 0.16 +2.9 1,645,270 - DDA3937_RS07290 0.16 +1.2 1,645,270 - DDA3937_RS07290 0.16 -1.6 1,645,270 - DDA3937_RS07290 0.16 -0.3 1,645,270 - DDA3937_RS07290 0.16 +0.5 1,645,273 + DDA3937_RS07290 0.16 +0.2 1,645,273 + DDA3937_RS07290 0.16 -0.1 1,645,273 + DDA3937_RS07290 0.16 +1.9 1,645,273 + +0.8 1,645,273 + DDA3937_RS07290 0.16 -1.8 1,645,274 - DDA3937_RS07290 0.16 -0.9 1,645,274 - DDA3937_RS07290 0.16 -0.1 1,645,370 - DDA3937_RS07290 0.27 +2.7 1,645,371 + DDA3937_RS07290 0.27 -0.6 1,645,371 + DDA3937_RS07290 0.27 +0.6 1,645,372 - DDA3937_RS07290 0.27 -0.9 1,645,433 - DDA3937_RS07290 0.34 +1.2 1,645,460 + DDA3937_RS07290 0.37 -0.8 1,645,460 + DDA3937_RS07290 0.37 +0.1 1,645,548 + DDA3937_RS07290 0.47 -2.0 1,645,548 + DDA3937_RS07290 0.47 -0.6 1,645,549 - +0.4 1,645,549 - DDA3937_RS07290 0.47 +2.4 1,645,626 + DDA3937_RS07290 0.55 -1.9 1,645,650 + DDA3937_RS07290 0.58 -1.9 1,645,651 - DDA3937_RS07290 0.58 -0.4 1,645,653 + DDA3937_RS07290 0.58 -2.5 1,645,672 + DDA3937_RS07290 0.60 -0.4 1,645,673 - DDA3937_RS07290 0.60 +0.4 1,645,673 - DDA3937_RS07290 0.60 -1.9 1,645,673 - DDA3937_RS07290 0.60 -0.4 1,645,719 + DDA3937_RS07290 0.66 -1.6 1,645,720 - DDA3937_RS07290 0.66 -0.6 1,645,751 + DDA3937_RS07290 0.69 -0.9 1,645,818 + DDA3937_RS07290 0.77 -1.4 1,645,818 + DDA3937_RS07290 0.77 -0.7 1,645,818 + DDA3937_RS07290 0.77 -1.8 1,645,818 + DDA3937_RS07290 0.77 -2.9 1,645,818 + DDA3937_RS07290 0.77 -1.4 1,645,818 + DDA3937_RS07290 0.77 +1.4 1,645,818 + DDA3937_RS07290 0.77 -1.3 1,645,818 + DDA3937_RS07290 0.77 -0.2 1,645,818 + DDA3937_RS07290 0.77 +0.8 1,645,819 - DDA3937_RS07290 0.77 -0.6 1,645,819 - DDA3937_RS07290 0.77 -2.1 1,645,819 - DDA3937_RS07290 0.77 -0.0 1,645,819 - DDA3937_RS07290 0.77 -1.2 1,645,955 - -0.9 1,645,983 + -0.5 1,645,984 - +1.2 1,645,990 + -1.2 1,645,990 + +3.2 1,645,991 - +0.1 1,645,991 - -1.8 1,645,991 - -3.0 1,645,991 - -1.7 1,646,001 + -0.7 1,646,008 + -1.6 1,646,008 + -1.2 1,646,008 + -0.2 1,646,009 - -2.2 1,646,026 + +0.1 1,646,027 - +1.4 1,646,027 - +0.4 1,646,027 - +1.2 1,646,062 - -2.1 1,646,112 + -1.9 1,646,113 - -0.7 1,646,115 + +1.1 1,646,115 + +0.2 1,646,116 - -1.2 1,646,116 - +0.5 1,646,142 + DDA3937_RS07295 0.13 +0.2 1,646,143 - DDA3937_RS07295 0.13 +0.5 1,646,143 - DDA3937_RS07295 0.13 -1.2 1,646,143 - DDA3937_RS07295 0.13 +2.4 1,646,143 - DDA3937_RS07295 0.13 -1.7 1,646,187 + DDA3937_RS07295 0.19 -0.0 1,646,188 - DDA3937_RS07295 0.19 +1.7 1,646,289 + DDA3937_RS07295 0.31 -0.3 1,646,290 - DDA3937_RS07295 0.31 -0.3 1,646,312 + DDA3937_RS07295 0.34 +0.5 1,646,313 - DDA3937_RS07295 0.34 -1.6 1,646,313 - DDA3937_RS07295 0.34 -0.0 1,646,350 + DDA3937_RS07295 0.39 -0.7 1,646,350 + DDA3937_RS07295 0.39 -3.2 1,646,350 + DDA3937_RS07295 0.39 -2.3 1,646,351 - DDA3937_RS07295 0.39 +0.1 1,646,351 - DDA3937_RS07295 0.39 -0.9 1,646,352 + -0.2 1,646,352 + DDA3937_RS07295 0.39 -0.9 1,646,403 + DDA3937_RS07295 0.45 -0.8 1,646,428 - DDA3937_RS07295 0.48 +0.3 1,646,595 + DDA3937_RS07295 0.69 -2.1 1,646,603 - DDA3937_RS07295 0.70 -2.7 1,646,701 + DDA3937_RS07295 0.82 -2.1 1,646,702 - DDA3937_RS07295 0.82 -0.9 1,646,702 - DDA3937_RS07295 0.82 -0.1 1,646,702 - DDA3937_RS07295 0.82 -0.2 1,646,702 - DDA3937_RS07295 0.82 -1.6 1,646,779 + +4.2 1,646,780 - +0.1 1,646,780 - -1.8 1,646,781 + -1.9 1,646,782 - -0.6 1,646,782 - -0.7 1,646,813 + -0.2 1,646,813 + -0.7 1,646,813 + -1.4 1,646,814 - -0.9 1,646,814 - -0.6 1,646,819 + -1.3 1,646,820 - -0.4 1,646,820 - -0.9 1,646,846 - -0.2 1,646,925 + -0.6 1,646,925 + -2.1 1,647,059 + DDA3937_RS07300 0.27 -0.7 1,647,059 + DDA3937_RS07300 0.27 -2.5 1,647,059 + DDA3937_RS07300 0.27 -0.6 1,647,059 + DDA3937_RS07300 0.27 -1.4 1,647,059 + DDA3937_RS07300 0.27 +0.2 1,647,060 - DDA3937_RS07300 0.27 +0.0 1,647,060 - DDA3937_RS07300 0.27 +3.4 1,647,060 - DDA3937_RS07300 0.27 -0.6 1,647,093 + DDA3937_RS07300 0.32 -0.4 1,647,093 + DDA3937_RS07300 0.32 -0.8 1,647,093 + DDA3937_RS07300 0.32 -0.4 1,647,127 + DDA3937_RS07300 0.36 -2.5 1,647,128 - DDA3937_RS07300 0.36 +2.4 1,647,128 - DDA3937_RS07300 0.36 -0.4 1,647,129 + DDA3937_RS07300 0.36 -1.2 1,647,129 + DDA3937_RS07300 0.36 +1.1 1,647,129 + DDA3937_RS07300 0.36 -0.4 1,647,129 + DDA3937_RS07300 0.36 -0.3 1,647,130 - DDA3937_RS07300 0.37 -2.7 1,647,130 - DDA3937_RS07300 0.37 -0.4 1,647,130 - DDA3937_RS07300 0.37 -0.9 1,647,130 - DDA3937_RS07300 0.37 -0.9 1,647,130 - DDA3937_RS07300 0.37 +0.1 1,647,130 - DDA3937_RS07300 0.37 -1.7 1,647,197 + DDA3937_RS07300 0.45 -0.2 1,647,198 - DDA3937_RS07300 0.46 -0.2 1,647,198 - DDA3937_RS07300 0.46 +0.1 1,647,237 - DDA3937_RS07300 0.51 +0.4 1,647,237 - DDA3937_RS07300 0.51 -1.2 1,647,266 + DDA3937_RS07300 0.54 -0.4 1,647,277 + DDA3937_RS07300 0.56 -1.3 1,647,277 + DDA3937_RS07300 0.56 +0.2 1,647,278 - DDA3937_RS07300 0.56 -0.6 1,647,318 + DDA3937_RS07300 0.61 -2.3 1,647,318 + DDA3937_RS07300 0.61 -1.6 1,647,319 - DDA3937_RS07300 0.61 -0.5 1,647,354 + DDA3937_RS07300 0.66 -1.1 1,647,354 + DDA3937_RS07300 0.66 -0.4 1,647,456 + DDA3937_RS07300 0.79 +0.5 1,647,456 + DDA3937_RS07300 0.79 +1.5 1,647,457 - DDA3937_RS07300 0.80 -0.7 1,647,457 - DDA3937_RS07300 0.80 -0.8 1,647,459 + DDA3937_RS07300 0.80 +0.2 1,647,459 + DDA3937_RS07300 0.80 -2.1 1,647,460 - DDA3937_RS07300 0.80 -0.7 1,647,468 + DDA3937_RS07300 0.81 -0.9 1,647,484 + DDA3937_RS07300 0.83 +0.2 1,647,484 + DDA3937_RS07300 0.83 +0.3 1,647,484 + DDA3937_RS07300 0.83 -0.2 1,647,525 + DDA3937_RS07300 0.88 +0.2 1,647,551 + -0.1 1,647,653 + -0.6 1,647,731 - +0.3 1,647,743 + -0.1 1,647,743 + +0.1 1,647,744 - -2.2 1,647,744 - -0.1 1,647,841 + -1.6 1,647,841 + -0.7 1,647,841 + +2.3 1,647,842 - -1.8 1,647,842 - +1.3 1,647,842 - -1.9
Or see this region's nucleotide sequence