Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06855

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,534,054	+		DDA3937_RS06850	0.49	-1.4
1,534,093	-		DDA3937_RS06850	0.53	+1.4
1,534,196	+		DDA3937_RS06850	0.64	-1.6
1,534,197	-		DDA3937_RS06850	0.64	-0.8
1,534,197	-		DDA3937_RS06850	0.64	-0.6
1,534,197	-		DDA3937_RS06850	0.64	-0.2
1,534,246	-		DDA3937_RS06850	0.69	-0.5
1,534,259	+		DDA3937_RS06850	0.71	+1.3
1,534,259	+		DDA3937_RS06850	0.71	+1.2
1,534,259	+		DDA3937_RS06850	0.71	+0.4
1,534,267	-		DDA3937_RS06850	0.72	+0.7
1,534,272	+		DDA3937_RS06850	0.72	+0.4
1,534,272	+		DDA3937_RS06850	0.72	+1.4
1,534,313	+		DDA3937_RS06850	0.76	+1.0
1,534,314	-		DDA3937_RS06850	0.77	-2.1
1,534,314	-		DDA3937_RS06850	0.77	-2.5
1,534,384	-		DDA3937_RS06850	0.84	-4.3
1,534,387	-		DDA3937_RS06850	0.84	+0.8
1,534,402	+		DDA3937_RS06850	0.86	-3.1
1,534,450	+				-1.6
1,534,451	-				-0.8
1,534,451	-				-0.3
1,534,452	+				-0.9
1,534,540	-				-1.9
1,534,555	-				-0.9
1,534,694	-				-0.6
1,534,694	-				+1.3
1,534,694	-				+0.4
1,534,697	+				-1.2
1,534,697	+				-0.8
1,534,698	-				-2.3
1,534,721	-				-2.4
1,534,821	+				-0.7
1,534,821	+				+0.2
1,534,822	-				+2.1
1,534,827	-				-2.3
1,534,827	-				+0.1
1,534,875	-				-0.8
1,534,876	+				-0.2
1,534,876	+				-1.2
1,534,877	-				+0.5
1,534,877	-				-3.8
1,534,877	-				+1.5
1,534,877	-				-1.3
1,534,877	-				-3.3
1,534,877	-				-0.9
1,534,880	+				-1.4
1,534,880	+				-0.6
1,534,881	-				-0.6
1,534,881	-				+1.4
1,534,881	-				+1.4
1,534,881	-				-0.2
1,534,881	-				-0.8
1,534,892	-				-2.4
1,534,892	-				+0.9
1,534,892	-				+3.5
1,534,893	+				-0.0
1,534,893	+				-1.2
1,534,893	+				+0.6
1,534,893	+				+1.2
1,534,893	+				-0.1
1,534,893	+				+1.0
1,534,893	+				+1.0
1,534,893	+				+0.4
1,534,894	-				+0.2
1,534,894	-				-0.8
1,534,894	-				-1.4
1,534,894	-				-1.0
1,534,894	-				-0.8
1,534,894	-				-1.2
1,534,897	+				+0.9
1,534,897	+				-0.7
1,534,897	+				-0.6
1,534,897	+				-0.9
1,534,897	+				-0.2
1,534,897	+				-2.0
1,534,897	+				-0.0
1,534,898	-				+3.7
1,534,898	-				-0.6
1,534,898	-				+0.3
1,534,909	-				-0.4
1,534,909	-				+1.3
1,534,910	+				-0.9
1,534,910	+				-0.9
1,534,910	+				-1.4
1,534,910	+				+0.3
1,534,910	+				+0.2
1,534,910	+				-1.3
1,534,910	+				+1.4
1,534,911	-				+0.6
1,534,911	-				-1.7
1,534,911	-				-0.2
1,534,914	+				-1.5
1,534,914	+				+0.4
1,534,914	+				-0.6
1,534,914	+				-1.0
1,534,914	+				-1.4
1,534,914	+				-2.5
1,534,914	+				+0.6
1,534,914	+				+2.5
1,534,915	-				+2.5
1,534,915	-				-0.7
1,534,915	-				+0.8
1,534,915	-				-0.9
1,534,915	-				-0.9
1,534,915	-				-0.5
1,534,915	-				-0.9
1,534,915	-				+0.1
1,534,916	+				+1.2
1,534,916	+				-0.3
1,534,916	+				-0.8
1,534,916	+				-1.6
1,534,916	+				-0.1
1,534,916	+				-0.2
1,534,917	-				-0.2
1,534,917	-				-2.0
1,534,963	+				-1.8
1,534,977	+				-0.6
1,534,977	+				+1.7
1,534,978	-				-1.0
1,534,978	-				-1.2
1,535,031	+				+1.4
1,535,032	-				-0.3
1,535,032	-				-1.2
1,535,032	-				-1.0
1,535,035	+				+1.8
1,535,035	+				-0.6
1,535,036	-				-0.0
1,535,083	+		DDA3937_RS06855	0.20	-2.1
1,535,083	+		DDA3937_RS06855	0.20	+0.8
1,535,084	-		DDA3937_RS06855	0.21	+0.1
1,535,084	-		DDA3937_RS06855	0.21	-0.8
1,535,084	-		DDA3937_RS06855	0.21	-1.3
1,535,159	-		DDA3937_RS06855	0.49	-0.5
1,535,161	+		DDA3937_RS06855	0.50	-2.1
1,535,161	+		DDA3937_RS06855	0.50	+1.0
1,535,170	+		DDA3937_RS06855	0.54	-1.2
1,535,170	+		DDA3937_RS06855	0.54	+1.4
1,535,171	-		DDA3937_RS06855	0.54	-0.6
1,535,171	-		DDA3937_RS06855	0.54	-0.9
1,535,190	+		DDA3937_RS06855	0.61	-0.7
1,535,191	-		DDA3937_RS06855	0.62	-2.2
1,535,255	-		DDA3937_RS06855	0.86	-1.7
1,535,255	-		DDA3937_RS06855	0.86	-1.0
1,535,296	+				-0.5
1,535,297	-				-1.3
1,535,311	-				-0.7
1,535,311	-				-2.9
1,535,320	-				-0.3
1,535,320	-				-0.6
1,535,320	-				-2.6
1,535,347	-				+0.4
1,535,349	+				+0.4
1,535,441	+				+0.6
1,535,441	+				-2.3
1,535,441	+				-0.3
1,535,441	+				-1.4
1,535,441	+				-0.1
1,535,442	-				+0.4
1,535,442	-				+2.0
1,535,442	-				-0.2
1,535,442	-				-0.2
1,535,442	-				+1.4
1,535,445	+				-1.0
1,535,445	+				-0.6
1,535,445	+				-2.6
1,535,445	+				-1.5
1,535,445	+				-0.9
1,535,445	+				-0.1
1,535,445	+				-1.3
1,535,445	+				-1.2
1,535,445	+				-0.2
1,535,445	+				-1.5
1,535,446	-				-0.8
1,535,446	-				-0.2
1,535,446	-				-1.4
1,535,446	-				+0.4
1,535,446	-				-0.6
1,535,446	-				-2.8
1,535,446	-				+1.2
1,535,449	+				+0.7
1,535,449	+				+0.7
1,535,449	+				+0.2
1,535,449	+				-1.2
1,535,449	+				-1.0
1,535,449	+				-0.4
1,535,449	+				-2.5
1,535,450	-				+2.0
1,535,450	-				+2.1
1,535,450	-				-0.8
1,535,616	+				+0.7
1,535,625	+				+0.8
1,535,627	+				-2.0
1,535,632	-				+0.7
1,535,645	+				-0.6
1,535,646	-				-0.6
1,535,689	+				+0.3
1,535,698	+				-1.2
1,535,698	+				-0.0
1,535,698	+				-0.3
1,535,698	+				-0.4
1,535,698	+				-0.6
1,535,698	+				-1.4
1,535,699	-				-0.6
1,535,699	-				-0.7
1,535,864	+				-0.6
1,535,903	-				-0.4
1,535,906	+				-1.5
1,535,907	-				-0.2
1,535,959	-				-0.1
1,535,972	+				+0.3
1,535,972	+				-1.9
1,535,972	+				-0.7
1,535,973	-				-0.6
1,535,973	-				-3.4
1,535,975	+				-0.9
1,535,976	-				-1.4
1,535,976	-				-1.4
1,536,047	+				+0.4
1,536,063	-				+1.5
1,536,104	-				+0.8
1,536,125	+				+3.9
1,536,126	-				-0.2
1,536,126	-				+0.3
1,536,126	-				-0.2
1,536,158	+				-1.2
1,536,158	+				-0.9
1,536,158	+				-0.2
1,536,158	+				-2.0
1,536,159	-				-0.1
1,536,159	-				+0.8