Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06310

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,408,090	+		DDA3937_RS06305	0.16	+0.2
1,408,173	-		DDA3937_RS06305	0.24	+0.9
1,408,173	-		DDA3937_RS06305	0.24	+0.2
1,408,173	-		DDA3937_RS06305	0.24	-1.7
1,408,175	+		DDA3937_RS06305	0.24	+1.3
1,408,175	+		DDA3937_RS06305	0.24	-0.1
1,408,175	+		DDA3937_RS06305	0.24	-0.8
1,408,175	+		DDA3937_RS06305	0.24	+0.2
1,408,175	+		DDA3937_RS06305	0.24	-2.4
1,408,175	+		DDA3937_RS06305	0.24	-1.5
1,408,175	+		DDA3937_RS06305	0.24	-1.0
1,408,175	+		DDA3937_RS06305	0.24	-0.1
1,408,175	+		DDA3937_RS06305	0.24	-0.5
1,408,176	-		DDA3937_RS06305	0.24	-1.0
1,408,176	-		DDA3937_RS06305	0.24	-1.1
1,408,176	-		DDA3937_RS06305	0.24	+0.3
1,408,176	-		DDA3937_RS06305	0.24	-1.5
1,408,176	-		DDA3937_RS06305	0.24	-0.4
1,408,176	-		DDA3937_RS06305	0.24	-0.3
1,408,176	-				-0.8
1,408,176	-		DDA3937_RS06305	0.24	+0.4
1,408,177	+		DDA3937_RS06305	0.24	-0.8
1,408,178	-		DDA3937_RS06305	0.24	-0.1
1,408,178	-		DDA3937_RS06305	0.24	+2.3
1,408,329	-		DDA3937_RS06305	0.37	+0.3
1,408,580	+		DDA3937_RS06305	0.59	+0.5
1,408,580	+		DDA3937_RS06305	0.59	+0.7
1,408,581	-		DDA3937_RS06305	0.59	+2.4
1,408,581	-		DDA3937_RS06305	0.59	-0.0
1,408,757	-		DDA3937_RS06305	0.74	-0.8
1,408,903	+		DDA3937_RS06305	0.87	+1.9
1,408,935	+		DDA3937_RS06305	0.90	+0.6
1,409,048	+				-2.0
1,409,048	+				+3.1
1,409,048	+				-0.8
1,409,048	+				+2.5
1,409,048	+				-0.1
1,409,048	+				-1.0
1,409,049	-				-1.5
1,409,049	-				-0.2
1,409,049	-				+0.4
1,409,054	+				-1.5
1,409,054	+				-0.7
1,409,054	+				+0.5
1,409,054	+				-0.7
1,409,054	+				+0.0
1,409,055	-				+1.1
1,409,055	-				-0.8
1,409,055	-				-1.0
1,409,055	-				-0.5
1,409,056	+				-2.0
1,409,057	-				+0.1
1,409,057	-				-0.3
1,409,057	-				-0.1
1,409,255	-		DDA3937_RS06310	0.22	+1.9
1,409,325	+		DDA3937_RS06310	0.31	-1.1
1,409,326	-		DDA3937_RS06310	0.31	-1.1
1,409,493	+		DDA3937_RS06310	0.52	-1.0
1,409,494	-		DDA3937_RS06310	0.52	-0.5
1,409,514	+				+1.9
1,409,515	-		DDA3937_RS06310	0.55	-0.8
1,409,607	+		DDA3937_RS06310	0.66	-0.8
1,409,607	+		DDA3937_RS06310	0.66	+0.9
1,409,607	+		DDA3937_RS06310	0.66	+1.1
1,409,611	+		DDA3937_RS06310	0.67	+0.4
1,409,611	+		DDA3937_RS06310	0.67	-0.5
1,409,611	+		DDA3937_RS06310	0.67	-0.6
1,409,611	+		DDA3937_RS06310	0.67	-1.0
1,409,611	+		DDA3937_RS06310	0.67	+1.3
1,409,612	-		DDA3937_RS06310	0.67	+0.9
1,409,612	-		DDA3937_RS06310	0.67	-1.2
1,409,612	-		DDA3937_RS06310	0.67	-1.7
1,409,612	-		DDA3937_RS06310	0.67	+0.8
1,409,655	+		DDA3937_RS06310	0.72	+0.1
1,409,655	+		DDA3937_RS06310	0.72	-2.1
1,409,655	+		DDA3937_RS06310	0.72	+2.9
1,409,655	+		DDA3937_RS06310	0.72	-1.0
1,409,655	+		DDA3937_RS06310	0.72	-1.1
1,409,655	+		DDA3937_RS06310	0.72	-2.1
1,409,656	-		DDA3937_RS06310	0.73	-1.6
1,409,656	-		DDA3937_RS06310	0.73	+0.5
1,409,656	-		DDA3937_RS06310	0.73	-1.7
1,409,666	-		DDA3937_RS06310	0.74	-0.1
1,409,730	+		DDA3937_RS06310	0.82	+1.9
1,409,731	-		DDA3937_RS06310	0.82	+3.9
1,409,731	-		DDA3937_RS06310	0.82	-2.0
1,409,911	+				+0.4
1,409,912	-				-2.6
1,409,936	+				+0.1
1,409,937	-				-0.8
1,409,952	+				-1.7
1,409,952	+				+1.1
1,409,952	+				-0.8
1,409,952	+				+0.2
1,409,953	-				-0.2
1,409,953	-				-0.8
1,409,953	-				-0.8
1,409,953	-				-1.3
1,409,955	+				+0.5
1,409,955	+				-0.7
1,409,955	+				-1.5
1,409,955	+				-0.5
1,409,955	+				-0.8
1,409,956	-				-1.1
1,409,956	-				-1.6
1,409,956	-				+0.1
1,410,031	-				+0.0
1,410,160	+				-0.6
1,410,160	+				-1.7
1,410,161	-				-1.1
1,410,161	-				-3.1
1,410,161	-				-3.0
1,410,161	-				-0.7
1,410,161	-				-1.1
1,410,162	+				-1.1
1,410,216	+				-1.7
1,410,216	+				-0.9
1,410,216	+				-1.0
1,410,216	+				-0.2
1,410,216	+				-0.1
1,410,299	+				-1.8
1,410,300	-				+0.4
1,410,387	+		DDA3937_RS06315	0.12	+1.4
1,410,387	+		DDA3937_RS06315	0.12	+0.5
1,410,388	-		DDA3937_RS06315	0.12	-2.4
1,410,423	+		DDA3937_RS06315	0.14	-0.1
1,410,423	+		DDA3937_RS06315	0.14	-0.3
1,410,423	+		DDA3937_RS06315	0.14	-0.2
1,410,423	+		DDA3937_RS06315	0.14	+0.2
1,410,424	-		DDA3937_RS06315	0.14	+0.1
1,410,424	-		DDA3937_RS06315	0.14	-0.9
1,410,424	-		DDA3937_RS06315	0.14	-1.1
1,410,435	+		DDA3937_RS06315	0.15	-2.1
1,410,436	-		DDA3937_RS06315	0.15	-0.8
1,410,436	-		DDA3937_RS06315	0.15	-0.8
1,410,436	-		DDA3937_RS06315	0.15	-1.0
1,410,491	+		DDA3937_RS06315	0.19	-0.5
1,410,491	+		DDA3937_RS06315	0.19	-0.2
1,410,558	+		DDA3937_RS06315	0.24	+0.2
1,410,582	+		DDA3937_RS06315	0.25	-0.1
1,410,613	+		DDA3937_RS06315	0.27	-0.2
1,410,613	+		DDA3937_RS06315	0.27	-0.5
1,410,614	-		DDA3937_RS06315	0.27	+0.9
1,410,727	+		DDA3937_RS06315	0.35	+0.2
1,410,727	+		DDA3937_RS06315	0.35	-1.2
1,410,727	+		DDA3937_RS06315	0.35	-1.4
1,410,727	+		DDA3937_RS06315	0.35	-0.5
1,410,727	+		DDA3937_RS06315	0.35	-2.1
1,410,728	-		DDA3937_RS06315	0.35	+0.3
1,410,728	-		DDA3937_RS06315	0.35	-1.5
1,410,728	-		DDA3937_RS06315	0.35	+1.7
1,410,728	-		DDA3937_RS06315	0.35	-1.1
1,410,745	+		DDA3937_RS06315	0.36	-0.2
1,410,745	+		DDA3937_RS06315	0.36	+0.5
1,410,745	+		DDA3937_RS06315	0.36	-0.7
1,410,745	+		DDA3937_RS06315	0.36	-0.4
1,410,746	-		DDA3937_RS06315	0.36	-0.5
1,410,774	+		DDA3937_RS06315	0.38	+2.8
1,410,774	+		DDA3937_RS06315	0.38	+0.5
1,410,808	+		DDA3937_RS06315	0.41	-1.2
1,410,808	+		DDA3937_RS06315	0.41	-2.6
1,410,808	+		DDA3937_RS06315	0.41	-0.3
1,410,808	+		DDA3937_RS06315	0.41	-1.1
1,410,808	+		DDA3937_RS06315	0.41	-0.3
1,410,808	+		DDA3937_RS06315	0.41	-0.8
1,410,808	+		DDA3937_RS06315	0.41	-1.7
1,410,808	+		DDA3937_RS06315	0.41	+1.5
1,410,809	-		DDA3937_RS06315	0.41	+1.6
1,410,809	-		DDA3937_RS06315	0.41	-1.6
1,410,809	-		DDA3937_RS06315	0.41	-0.3
1,410,809	-		DDA3937_RS06315	0.41	+0.7
1,410,809	-		DDA3937_RS06315	0.41	-1.3