Strain Fitness in Dickeya dadantii 3937

Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04990

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
				remove
1,117,939	+	DDA3937_RS04985	0.70	+2.0
1,117,961	+	DDA3937_RS04985	0.71	+1.1
1,118,175	+	DDA3937_RS04985	0.78	-1.7
1,118,175	+	DDA3937_RS04985	0.78	-2.6
1,118,175	+	DDA3937_RS04985	0.78	-0.4
1,118,176	-	DDA3937_RS04985	0.78	+0.5
1,118,176	-	DDA3937_RS04985	0.78	+0.0
1,118,177	+	DDA3937_RS04985	0.78	-2.5
1,118,177	+	DDA3937_RS04985	0.78	-0.6
1,118,177	+	DDA3937_RS04985	0.78	-1.3
1,118,177	+	DDA3937_RS04985	0.78	+2.9
1,118,177	+	DDA3937_RS04985	0.78	-3.0
1,118,177	+	DDA3937_RS04985	0.78	-1.6
1,118,178	-	DDA3937_RS04985	0.78	+0.7
1,118,178	-	DDA3937_RS04985	0.78	+0.0
1,118,178	-	DDA3937_RS04985	0.78	-1.1
1,118,178	-	DDA3937_RS04985	0.78	-1.2
1,118,178	-	DDA3937_RS04985	0.78	+0.2
1,118,178	-	DDA3937_RS04985	0.78	-1.4
1,118,178	-	DDA3937_RS04985	0.78	+0.6
1,118,179	+	DDA3937_RS04985	0.78	-0.4
1,118,179	+	DDA3937_RS04985	0.78	-1.6
1,118,179	+	DDA3937_RS04985	0.78	+1.0
1,118,179	+	DDA3937_RS04985	0.78	+2.6
1,118,179	+	DDA3937_RS04985	0.78	-1.0
1,118,180	-	DDA3937_RS04985	0.78	+1.0
1,118,180	-	DDA3937_RS04985	0.78	+0.0
1,118,180	-	DDA3937_RS04985	0.78	+1.6
1,118,202	+	DDA3937_RS04985	0.79	-0.1
1,118,203	-	DDA3937_RS04985	0.79	-1.2
1,118,203	-	DDA3937_RS04985	0.79	-0.9
1,118,203	-	DDA3937_RS04985	0.79	+1.0
1,118,216	+	DDA3937_RS04985	0.80	-2.9
1,118,216	+	DDA3937_RS04985	0.80	-0.4
1,118,217	-	DDA3937_RS04985	0.80	+1.6
1,118,217	-			+0.3
1,118,221	+	DDA3937_RS04985	0.80	-0.4
1,118,221	+	DDA3937_RS04985	0.80	-1.3
1,118,222	-	DDA3937_RS04985	0.80	+1.2
1,118,222	-			+1.6
1,118,222	-	DDA3937_RS04985	0.80	-0.7
1,118,222	-	DDA3937_RS04985	0.80	-0.7
1,118,222	-	DDA3937_RS04985	0.80	+1.1
1,118,265	+	DDA3937_RS04985	0.81	+0.5
1,118,266	-	DDA3937_RS04985	0.81	-0.1
1,118,266	-	DDA3937_RS04985	0.81	-1.2
1,118,269	+	DDA3937_RS04985	0.82	-1.1
1,118,270	-	DDA3937_RS04985	0.82	-1.6
1,118,270	-	DDA3937_RS04985	0.82	-0.4
1,118,288	+	DDA3937_RS04985	0.82	+0.2
1,118,288	+	DDA3937_RS04985	0.82	+3.8
1,118,378	+	DDA3937_RS04985	0.85	+1.0
1,118,378	+	DDA3937_RS04985	0.85	-0.6
1,118,378	+	DDA3937_RS04985	0.85	+1.6
1,118,378	+	DDA3937_RS04985	0.85	+0.3
1,118,388	-	DDA3937_RS04985	0.86	+2.0
1,118,455	+	DDA3937_RS04985	0.88	-1.9
1,118,455	+	DDA3937_RS04985	0.88	-0.5
1,118,456	-	DDA3937_RS04985	0.88	+0.0
1,118,456	-	DDA3937_RS04985	0.88	-0.7
1,118,520	+			-1.2
1,118,608	-			+0.1
1,118,693	+			-1.0
1,118,720	+			-0.4
1,118,720	+			+0.6
1,118,721	-			-1.4
1,118,721	-			-0.6
1,118,721	-			-0.7
1,118,757	+			+0.0
1,118,805	-			-0.9
1,118,810	+			-1.2
1,118,811	-			-1.1
1,118,835	-			-1.3
1,118,911	+			+0.9
1,118,912	-			-0.2
1,118,921	-			+0.9
1,118,921	-			-0.3
1,118,956	+			-1.7
1,118,956	+			-1.1
1,118,957	-			-1.7
1,118,957	-			-2.7
1,118,957	-			-0.1
1,118,962	+			-2.6
1,118,962	+			-2.2
1,118,962	+			-1.9
1,118,963	-			-2.4
1,118,963	-			-1.9
1,118,963	-			-4.7
1,119,134	-	DDA3937_RS04990	0.16	-2.7
1,119,171	-	DDA3937_RS04990	0.19	-1.9
1,119,247	-	DDA3937_RS04990	0.25	-2.6
1,119,462	+	DDA3937_RS04990	0.41	-2.4
1,119,483	+	DDA3937_RS04990	0.43	-3.3
1,119,518	+	DDA3937_RS04990	0.45	-2.9
1,119,519	-	DDA3937_RS04990	0.45	-0.6
1,119,519	-	DDA3937_RS04990	0.45	-2.0
1,119,521	-	DDA3937_RS04990	0.45	-1.2
1,119,548	+	DDA3937_RS04990	0.47	-1.4
1,119,549	-	DDA3937_RS04990	0.48	-1.2
1,119,549	-	DDA3937_RS04990	0.48	-2.9
1,119,549	-	DDA3937_RS04990	0.48	-3.1
1,119,549	-	DDA3937_RS04990	0.48	-2.1
1,119,587	+	DDA3937_RS04990	0.50	-2.9
1,119,587	+	DDA3937_RS04990	0.50	-2.1
1,119,587	+	DDA3937_RS04990	0.50	-3.4
1,120,015	+	DDA3937_RS04990	0.83	-1.6
1,120,060	+	DDA3937_RS04990	0.86	-0.4
1,120,061	-	DDA3937_RS04990	0.86	-1.8
1,120,088	+	DDA3937_RS04990	0.88	-0.4
1,120,089	-	DDA3937_RS04990	0.88	-2.4
1,120,093	-	DDA3937_RS04990	0.89	-3.6
1,120,093	-	DDA3937_RS04990	0.89	-2.2
1,120,093	-	DDA3937_RS04990	0.89	-2.8
1,120,093	-	DDA3937_RS04990	0.89	-0.2
1,120,157	+			-0.4
1,120,158	-			-1.3
1,120,158	-			-0.9
1,120,158	-			-1.6
1,120,192	+			-3.2
1,120,192	+			-3.1
1,120,192	+			-1.7
1,120,192	+			-3.0
1,120,192	+			-0.4
1,120,193	-			-2.0
1,120,193	-			-2.5
1,120,193	-			-1.7
1,120,193	-			-0.8
1,120,193	-			-1.6
1,120,193	-			-1.2
1,120,193	-			+0.6
1,120,193	-			-2.9
1,120,193	-			-0.3
1,120,193	-			-1.2
1,120,229	+			-0.4
1,120,230	-			-1.3
1,120,230	-			-1.7
1,120,230	-			-3.6
1,120,232	+			-3.0
1,120,232	+			-1.4
1,120,232	+			-2.8
1,120,233	-			-1.9
1,120,233	-			+0.0
1,120,233	-			-1.6
1,120,233	-			-1.6
1,120,233	-			-2.2
1,120,233	-			-1.7
1,120,233	-			-2.2
1,120,296	+			-0.2
1,120,337	-			-0.7
1,120,356	-			+0.7
1,120,405	-			-0.8
1,120,407	+			-1.9
1,120,408	-			-0.3
1,120,408	-			+0.1
1,120,506	+			+0.7
1,120,506	+			+0.0
1,120,507	-			+1.7
1,120,510	-			-0.5
1,120,533	+			-0.7
1,120,607	+	DDA3937_RS04995	0.11	+1.6
1,120,646	+	DDA3937_RS04995	0.14	-1.7
1,120,646	+	DDA3937_RS04995	0.14	-0.2
1,120,712	-	DDA3937_RS04995	0.20	+1.0
1,120,795	+	DDA3937_RS04995	0.26	+0.4
1,120,795	+	DDA3937_RS04995	0.26	+1.6
1,120,818	+	DDA3937_RS04995	0.28	-0.1
1,120,819	-	DDA3937_RS04995	0.28	-2.1
1,120,819	-	DDA3937_RS04995	0.28	-1.0
1,120,819	-	DDA3937_RS04995	0.28	-1.1
1,120,838	-	DDA3937_RS04995	0.30	-1.2
1,120,896	-	DDA3937_RS04995	0.34	+0.0
1,120,955	+	DDA3937_RS04995	0.39	+1.8
1,120,956	-	DDA3937_RS04995	0.39	-0.4
1,120,956	-	DDA3937_RS04995	0.39	+0.4
1,120,961	-	DDA3937_RS04995	0.40	-0.6
1,120,961	-	DDA3937_RS04995	0.40	-0.4
1,121,171	+	DDA3937_RS04995	0.57	-0.2
1,121,171	+	DDA3937_RS04995	0.57	-1.8
1,121,172	-	DDA3937_RS04995	0.57	-1.7
1,121,172	-	DDA3937_RS04995	0.57	+0.6

Or see this region's nucleotide sequence