Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04020

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04010 and DDA3937_RS04015 overlap by 1 nucleotidesDDA3937_RS04015 and DDA3937_RS04020 overlap by 1 nucleotidesDDA3937_RS04020 and DDA3937_RS04025 are separated by 2 nucleotidesDDA3937_RS04025 and DDA3937_RS04030 overlap by 4 nucleotides DDA3937_RS04010: DDA3937_RS04010 - conjugal transfer protein TrbE, at 894,154 to 896,604 _RS04010 DDA3937_RS04015: DDA3937_RS04015 - P-type conjugative transfer protein TrbJ, at 896,604 to 897,335 _RS04015 DDA3937_RS04020: DDA3937_RS04020 - P-type conjugative transfer protein TrbL, at 897,335 to 898,498 _RS04020 DDA3937_RS04025: DDA3937_RS04025 - conjugal transfer protein TrbF, at 898,501 to 899,205 _RS04025 DDA3937_RS04030: DDA3937_RS04030 - P-type conjugative transfer protein TrbG, at 899,202 to 900,098 _RS04030 Position (kb) 897 898 899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 896.353 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.359 kb on + strand, within DDA3937_RS04010at 896.360 kb on - strandat 896.360 kb on - strandat 896.456 kb on + strandat 896.456 kb on + strandat 896.457 kb on - strandat 896.553 kb on + strandat 896.671 kb on + strandat 896.671 kb on + strandat 896.688 kb on + strand, within DDA3937_RS04015at 896.688 kb on + strand, within DDA3937_RS04015at 896.689 kb on - strand, within DDA3937_RS04015at 896.689 kb on - strand, within DDA3937_RS04015at 896.699 kb on + strand, within DDA3937_RS04015at 896.699 kb on + strand, within DDA3937_RS04015at 896.700 kb on - strand, within DDA3937_RS04015at 896.700 kb on - strand, within DDA3937_RS04015at 896.779 kb on - strand, within DDA3937_RS04015at 896.798 kb on + strand, within DDA3937_RS04015at 896.799 kb on - strand, within DDA3937_RS04015at 896.883 kb on + strand, within DDA3937_RS04015at 896.884 kb on - strand, within DDA3937_RS04015at 896.923 kb on - strand, within DDA3937_RS04015at 896.934 kb on + strand, within DDA3937_RS04015at 896.935 kb on - strand, within DDA3937_RS04015at 896.935 kb on - strand, within DDA3937_RS04015at 896.964 kb on + strand, within DDA3937_RS04015at 896.964 kb on + strand, within DDA3937_RS04015at 896.965 kb on - strand, within DDA3937_RS04015at 896.965 kb on - strand, within DDA3937_RS04015at 897.289 kb on - strandat 897.289 kb on - strandat 897.312 kb on + strandat 897.313 kb on - strandat 897.383 kb on + strandat 897.383 kb on + strandat 897.473 kb on + strand, within DDA3937_RS04020at 897.473 kb on + strand, within DDA3937_RS04020at 897.473 kb on + strand, within DDA3937_RS04020at 897.474 kb on - strand, within DDA3937_RS04020at 897.474 kb on - strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.595 kb on - strand, within DDA3937_RS04020at 897.597 kb on + strand, within DDA3937_RS04020at 897.598 kb on - strand, within DDA3937_RS04020at 897.682 kb on + strand, within DDA3937_RS04020at 897.691 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.697 kb on + strand, within DDA3937_RS04020at 897.698 kb on - strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.804 kb on + strand, within DDA3937_RS04020at 897.828 kb on + strand, within DDA3937_RS04020at 897.829 kb on - strand, within DDA3937_RS04020at 897.972 kb on + strand, within DDA3937_RS04020at 897.973 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.228 kb on + strand, within DDA3937_RS04020at 898.229 kb on - strand, within DDA3937_RS04020at 898.288 kb on + strand, within DDA3937_RS04020at 898.289 kb on - strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.378 kb on - strand, within DDA3937_RS04020at 898.424 kb on - strandat 898.528 kb on + strandat 898.528 kb on + strandat 898.559 kb on - strandat 898.559 kb on - strandat 898.711 kb on + strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.772 kb on - strand, within DDA3937_RS04025at 898.772 kb on - strandat 898.799 kb on - strand, within DDA3937_RS04025at 898.799 kb on - strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.880 kb on - strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.887 kb on + strand, within DDA3937_RS04025at 898.888 kb on - strand, within DDA3937_RS04025at 898.922 kb on - strand, within DDA3937_RS04025at 899.147 kb on - strandat 899.149 kb on - strandat 899.217 kb on + strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.220 kb on + strandat 899.222 kb on - strandat 899.235 kb on + strandat 899.236 kb on - strandat 899.236 kb on - strandat 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.480 kb on + strandat 899.481 kb on - strand, within DDA3937_RS04030at 899.481 kb on - strand, within DDA3937_RS04030

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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896,353 + DDA3937_RS04010 0.90 -0.3
896,356 + DDA3937_RS04010 0.90 -0.5
896,356 + DDA3937_RS04010 0.90 -0.8
896,356 + DDA3937_RS04010 0.90 -0.2
896,356 + DDA3937_RS04010 0.90 -1.8
896,356 + DDA3937_RS04010 0.90 +0.2
896,357 - DDA3937_RS04010 0.90 -1.6
896,357 - DDA3937_RS04010 0.90 +0.4
896,357 - DDA3937_RS04010 0.90 -0.1
896,357 - DDA3937_RS04010 0.90 -1.9
896,357 - DDA3937_RS04010 0.90 +1.2
896,359 + DDA3937_RS04010 0.90 +1.8
896,360 - -2.8
896,360 - +1.1
896,456 + -1.4
896,456 + -0.8
896,457 - -1.5
896,553 + -0.5
896,671 + +0.9
896,671 + +1.7
896,688 + DDA3937_RS04015 0.11 +0.1
896,688 + DDA3937_RS04015 0.11 -2.2
896,689 - DDA3937_RS04015 0.12 +1.5
896,689 - DDA3937_RS04015 0.12 -0.4
896,699 + DDA3937_RS04015 0.13 -1.8
896,699 + DDA3937_RS04015 0.13 -3.8
896,700 - DDA3937_RS04015 0.13 -1.2
896,700 - DDA3937_RS04015 0.13 -2.0
896,779 - DDA3937_RS04015 0.24 -0.6
896,798 + DDA3937_RS04015 0.27 -0.6
896,799 - DDA3937_RS04015 0.27 -1.1
896,883 + DDA3937_RS04015 0.38 -0.1
896,884 - DDA3937_RS04015 0.38 +0.3
896,923 - DDA3937_RS04015 0.44 -0.3
896,934 + DDA3937_RS04015 0.45 +1.1
896,935 - DDA3937_RS04015 0.45 -0.4
896,935 - DDA3937_RS04015 0.45 -2.1
896,964 + DDA3937_RS04015 0.49 -0.9
896,964 + DDA3937_RS04015 0.49 +1.8
896,965 - DDA3937_RS04015 0.49 -2.0
896,965 - DDA3937_RS04015 0.49 -0.7
897,289 - -0.2
897,289 - -0.4
897,312 + +1.1
897,313 - -1.3
897,383 + -2.7
897,383 + -1.9
897,473 + DDA3937_RS04020 0.12 -1.5
897,473 + DDA3937_RS04020 0.12 +1.5
897,473 + DDA3937_RS04020 0.12 +0.1
897,474 - DDA3937_RS04020 0.12 +2.1
897,474 - DDA3937_RS04020 0.12 -0.6
897,542 + DDA3937_RS04020 0.18 +1.7
897,542 + DDA3937_RS04020 0.18 +0.1
897,542 + DDA3937_RS04020 0.18 +0.6
897,542 + DDA3937_RS04020 0.18 -0.6
897,543 - DDA3937_RS04020 0.18 -1.7
897,543 - DDA3937_RS04020 0.18 -0.6
897,543 - DDA3937_RS04020 0.18 -0.9
897,543 - DDA3937_RS04020 0.18 -0.1
897,543 - DDA3937_RS04020 0.18 -2.0
897,560 + DDA3937_RS04020 0.19 +0.5
897,560 + DDA3937_RS04020 0.19 +1.6
897,560 + DDA3937_RS04020 0.19 -2.7
897,560 + DDA3937_RS04020 0.19 -1.3
897,560 + DDA3937_RS04020 0.19 -0.5
897,560 + DDA3937_RS04020 0.19 -0.6
897,561 - DDA3937_RS04020 0.19 +1.7
897,561 - DDA3937_RS04020 0.19 +0.2
897,561 - DDA3937_RS04020 0.19 +1.3
897,561 - DDA3937_RS04020 0.19 -1.5
897,564 + DDA3937_RS04020 0.20 +1.9
897,564 + DDA3937_RS04020 0.20 -1.2
897,564 + DDA3937_RS04020 0.20 -0.8
897,564 + DDA3937_RS04020 0.20 +0.9
897,565 - DDA3937_RS04020 0.20 +1.1
897,565 - DDA3937_RS04020 0.20 -1.5
897,565 - DDA3937_RS04020 0.20 -0.8
897,565 - DDA3937_RS04020 0.20 -0.6
897,565 - DDA3937_RS04020 0.20 +1.8
897,565 - DDA3937_RS04020 0.20 -0.3
897,595 - DDA3937_RS04020 0.22 -0.9
897,597 + DDA3937_RS04020 0.23 +0.3
897,598 - DDA3937_RS04020 0.23 +0.1
897,682 + DDA3937_RS04020 0.30 +0.7
897,691 + DDA3937_RS04020 0.31 -0.9
897,693 + DDA3937_RS04020 0.31 -0.9
897,693 + DDA3937_RS04020 0.31 +1.3
897,693 + DDA3937_RS04020 0.31 -0.8
897,694 - DDA3937_RS04020 0.31 +1.4
897,694 - DDA3937_RS04020 0.31 +0.1
897,697 + DDA3937_RS04020 0.31 -0.5
897,698 - DDA3937_RS04020 0.31 -1.2
897,760 + DDA3937_RS04020 0.37 -0.6
897,760 + DDA3937_RS04020 0.37 +0.8
897,760 + DDA3937_RS04020 0.37 +0.4
897,761 - DDA3937_RS04020 0.37 +4.2
897,761 - DDA3937_RS04020 0.37 +0.8
897,761 - DDA3937_RS04020 0.37 -2.5
897,761 - DDA3937_RS04020 0.37 -0.5
897,804 + DDA3937_RS04020 0.40 -1.6
897,828 + DDA3937_RS04020 0.42 +1.1
897,829 - DDA3937_RS04020 0.42 -0.3
897,972 + DDA3937_RS04020 0.55 -0.8
897,973 - DDA3937_RS04020 0.55 -1.2
898,183 - DDA3937_RS04020 0.73 -2.2
898,183 - DDA3937_RS04020 0.73 -0.2
898,183 - DDA3937_RS04020 0.73 +0.5
898,183 - DDA3937_RS04020 0.73 -0.9
898,228 + DDA3937_RS04020 0.77 -0.3
898,229 - DDA3937_RS04020 0.77 +0.1
898,288 + DDA3937_RS04020 0.82 +3.2
898,289 - DDA3937_RS04020 0.82 +0.1
898,377 + DDA3937_RS04020 0.90 -1.1
898,377 + DDA3937_RS04020 0.90 +1.2
898,378 - DDA3937_RS04020 0.90 +1.3
898,424 - -1.6
898,528 + -1.5
898,528 + +1.2
898,559 - +0.2
898,559 - +1.5
898,711 + DDA3937_RS04025 0.30 +2.3
898,712 - DDA3937_RS04025 0.30 -0.3
898,712 - DDA3937_RS04025 0.30 -0.2
898,771 + DDA3937_RS04025 0.38 +0.1
898,771 + DDA3937_RS04025 0.38 -0.3
898,771 + DDA3937_RS04025 0.38 -2.1
898,772 - DDA3937_RS04025 0.38 -1.3
898,772 - +0.1
898,799 - DDA3937_RS04025 0.42 +0.5
898,799 - DDA3937_RS04025 0.42 +0.1
898,815 + DDA3937_RS04025 0.45 -2.5
898,815 + DDA3937_RS04025 0.45 -1.2
898,879 + DDA3937_RS04025 0.54 +0.7
898,879 + DDA3937_RS04025 0.54 -0.1
898,880 - DDA3937_RS04025 0.54 -1.1
898,885 + DDA3937_RS04025 0.54 -0.3
898,885 + DDA3937_RS04025 0.54 -2.4
898,885 + DDA3937_RS04025 0.54 -0.8
898,886 - DDA3937_RS04025 0.55 -2.3
898,886 - DDA3937_RS04025 0.55 -2.7
898,887 + DDA3937_RS04025 0.55 +2.2
898,888 - DDA3937_RS04025 0.55 -0.3
898,922 - DDA3937_RS04025 0.60 -1.7
899,147 - +1.2
899,149 - +0.4
899,217 + +0.2
899,218 - +0.6
899,218 - +0.0
899,218 - -0.9
899,218 - -0.6
899,220 + +1.7
899,222 - -0.2
899,235 + -1.8
899,236 - -0.6
899,236 - -1.5
899,327 + DDA3937_RS04030 0.14 -0.0
899,327 + DDA3937_RS04030 0.14 +3.5
899,327 + DDA3937_RS04030 0.14 -1.6
899,344 + DDA3937_RS04030 0.16 +0.1
899,344 + DDA3937_RS04030 0.16 +0.2
899,469 + DDA3937_RS04030 0.30 +0.2
899,469 + DDA3937_RS04030 0.30 -0.8
899,469 + DDA3937_RS04030 0.30 -1.0
899,470 - DDA3937_RS04030 0.30 +0.5
899,470 - DDA3937_RS04030 0.30 -0.5
899,480 + -0.3
899,481 - DDA3937_RS04030 0.31 +2.2
899,481 - DDA3937_RS04030 0.31 -0.6

Or see this region's nucleotide sequence