Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03280

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03275 and DDA3937_RS03280 are separated by 310 nucleotidesDDA3937_RS03280 and DDA3937_RS03285 overlap by 20 nucleotidesDDA3937_RS03285 and DDA3937_RS03290 are separated by 96 nucleotides DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263 _RS03275 DDA3937_RS03280: DDA3937_RS03280 - FAD assembly factor SdhE, at 717,574 to 717,840 _RS03280 DDA3937_RS03285: DDA3937_RS03285 - protein YgfX, at 717,821 to 718,252 _RS03285 DDA3937_RS03290: DDA3937_RS03290 - flavodoxin FldB, at 718,349 to 718,867 _RS03290 Position (kb) 717 718Strain fitness (log2 ratio) -2 -1 0 1 2 3at 717.284 kb on - strandat 717.284 kb on - strandat 717.284 kb on - strandat 717.306 kb on + strandat 717.306 kb on + strandat 717.307 kb on - strandat 717.353 kb on + strandat 717.409 kb on + strandat 717.409 kb on + strandat 717.410 kb on - strandat 717.410 kb on - strandat 717.420 kb on + strandat 717.421 kb on - strandat 717.440 kb on + strandat 717.441 kb on - strandat 717.443 kb on + strandat 717.455 kb on + strandat 717.455 kb on + strandat 717.456 kb on - strandat 717.465 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.482 kb on - strandat 717.482 kb on - strandat 717.502 kb on + strandat 717.502 kb on + strandat 717.507 kb on + strandat 717.513 kb on + strandat 717.514 kb on - strandat 717.550 kb on + strandat 717.551 kb on - strandat 717.551 kb on - strandat 717.597 kb on + strandat 717.598 kb on - strandat 717.668 kb on - strand, within DDA3937_RS03280at 717.714 kb on - strand, within DDA3937_RS03280at 717.813 kb on + strand, within DDA3937_RS03280at 717.814 kb on - strandat 718.071 kb on + strand, within DDA3937_RS03285at 718.072 kb on - strand, within DDA3937_RS03285at 718.168 kb on + strand, within DDA3937_RS03285at 718.168 kb on + strand, within DDA3937_RS03285at 718.355 kb on + strandat 718.355 kb on + strandat 718.356 kb on - strandat 718.419 kb on + strand, within DDA3937_RS03290at 718.459 kb on + strand, within DDA3937_RS03290at 718.460 kb on - strand, within DDA3937_RS03290at 718.595 kb on + strand, within DDA3937_RS03290at 718.614 kb on + strand, within DDA3937_RS03290at 718.731 kb on + strand, within DDA3937_RS03290at 718.731 kb on + strand, within DDA3937_RS03290at 718.732 kb on - strand, within DDA3937_RS03290at 718.779 kb on - strand, within DDA3937_RS03290at 718.831 kb on - strandat 718.831 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
717,284 - -0.1
717,284 - +0.1
717,284 - -0.8
717,306 + -0.6
717,306 + -0.7
717,307 - -1.1
717,353 + +0.2
717,409 + -0.5
717,409 + -0.6
717,410 - -1.6
717,410 - -0.4
717,420 + +0.1
717,421 - -0.5
717,440 + +0.1
717,441 - -2.1
717,443 + -1.3
717,455 + -0.1
717,455 + -0.3
717,456 - -1.4
717,465 + +0.7
717,481 + -1.6
717,481 + -1.1
717,481 + +3.5
717,481 + -2.6
717,482 - -0.0
717,482 - -0.3
717,502 + -0.4
717,502 + -0.6
717,507 + -0.6
717,513 + -1.3
717,514 - +0.2
717,550 + +0.7
717,551 - +0.1
717,551 - -0.6
717,597 + -0.1
717,598 - -0.3
717,668 - DDA3937_RS03280 0.35 -0.5
717,714 - DDA3937_RS03280 0.52 -1.4
717,813 + DDA3937_RS03280 0.90 -1.1
717,814 - +2.4
718,071 + DDA3937_RS03285 0.58 -0.1
718,072 - DDA3937_RS03285 0.58 -2.0
718,168 + DDA3937_RS03285 0.80 +0.3
718,168 + DDA3937_RS03285 0.80 +0.2
718,355 + -0.1
718,355 + -1.9
718,356 - -1.5
718,419 + DDA3937_RS03290 0.13 -0.9
718,459 + DDA3937_RS03290 0.21 -1.7
718,460 - DDA3937_RS03290 0.21 -1.7
718,595 + DDA3937_RS03290 0.47 -0.1
718,614 + DDA3937_RS03290 0.51 -0.6
718,731 + DDA3937_RS03290 0.74 -0.3
718,731 + DDA3937_RS03290 0.74 +1.2
718,732 - DDA3937_RS03290 0.74 +2.0
718,779 - DDA3937_RS03290 0.83 +1.5
718,831 - -1.5
718,831 - -1.2

Or see this region's nucleotide sequence