Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03275 and DDA3937_RS03280 are separated by 310 nucleotides DDA3937_RS03280 and DDA3937_RS03285 overlap by 20 nucleotides DDA3937_RS03285 and DDA3937_RS03290 are separated by 96 nucleotides
DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263
_RS03275
DDA3937_RS03280: DDA3937_RS03280 - FAD assembly factor SdhE, at 717,574 to 717,840
_RS03280
DDA3937_RS03285: DDA3937_RS03285 - protein YgfX, at 717,821 to 718,252
_RS03285
DDA3937_RS03290: DDA3937_RS03290 - flavodoxin FldB, at 718,349 to 718,867
_RS03290
Position (kb)
717
718 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 717.284 kb on - strand at 717.284 kb on - strand at 717.284 kb on - strand at 717.306 kb on + strand at 717.306 kb on + strand at 717.307 kb on - strand at 717.353 kb on + strand at 717.409 kb on + strand at 717.409 kb on + strand at 717.410 kb on - strand at 717.410 kb on - strand at 717.420 kb on + strand at 717.421 kb on - strand at 717.440 kb on + strand at 717.441 kb on - strand at 717.443 kb on + strand at 717.455 kb on + strand at 717.455 kb on + strand at 717.456 kb on - strand at 717.465 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.482 kb on - strand at 717.482 kb on - strand at 717.502 kb on + strand at 717.502 kb on + strand at 717.507 kb on + strand at 717.513 kb on + strand at 717.514 kb on - strand at 717.550 kb on + strand at 717.551 kb on - strand at 717.551 kb on - strand at 717.597 kb on + strand at 717.598 kb on - strand at 717.668 kb on - strand, within DDA3937_RS03280 at 717.714 kb on - strand, within DDA3937_RS03280 at 717.813 kb on + strand, within DDA3937_RS03280 at 717.814 kb on - strand at 718.071 kb on + strand, within DDA3937_RS03285 at 718.072 kb on - strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.355 kb on + strand at 718.355 kb on + strand at 718.356 kb on - strand at 718.419 kb on + strand, within DDA3937_RS03290 at 718.459 kb on + strand, within DDA3937_RS03290 at 718.460 kb on - strand, within DDA3937_RS03290 at 718.595 kb on + strand, within DDA3937_RS03290 at 718.614 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.732 kb on - strand, within DDA3937_RS03290 at 718.779 kb on - strand, within DDA3937_RS03290 at 718.831 kb on - strand at 718.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 717,284 - -0.1 717,284 - +0.1 717,284 - -0.8 717,306 + -0.6 717,306 + -0.7 717,307 - -1.1 717,353 + +0.2 717,409 + -0.5 717,409 + -0.6 717,410 - -1.6 717,410 - -0.4 717,420 + +0.1 717,421 - -0.5 717,440 + +0.1 717,441 - -2.1 717,443 + -1.3 717,455 + -0.1 717,455 + -0.3 717,456 - -1.4 717,465 + +0.7 717,481 + -1.6 717,481 + -1.1 717,481 + +3.5 717,481 + -2.6 717,482 - -0.0 717,482 - -0.3 717,502 + -0.4 717,502 + -0.6 717,507 + -0.6 717,513 + -1.3 717,514 - +0.2 717,550 + +0.7 717,551 - +0.1 717,551 - -0.6 717,597 + -0.1 717,598 - -0.3 717,668 - DDA3937_RS03280 0.35 -0.5 717,714 - DDA3937_RS03280 0.52 -1.4 717,813 + DDA3937_RS03280 0.90 -1.1 717,814 - +2.4 718,071 + DDA3937_RS03285 0.58 -0.1 718,072 - DDA3937_RS03285 0.58 -2.0 718,168 + DDA3937_RS03285 0.80 +0.3 718,168 + DDA3937_RS03285 0.80 +0.2 718,355 + -0.1 718,355 + -1.9 718,356 - -1.5 718,419 + DDA3937_RS03290 0.13 -0.9 718,459 + DDA3937_RS03290 0.21 -1.7 718,460 - DDA3937_RS03290 0.21 -1.7 718,595 + DDA3937_RS03290 0.47 -0.1 718,614 + DDA3937_RS03290 0.51 -0.6 718,731 + DDA3937_RS03290 0.74 -0.3 718,731 + DDA3937_RS03290 0.74 +1.2 718,732 - DDA3937_RS03290 0.74 +2.0 718,779 - DDA3937_RS03290 0.83 +1.5 718,831 - -1.5 718,831 - -1.2
Or see this region's nucleotide sequence