Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03115 and DDA3937_RS03120 are separated by 320 nucleotides DDA3937_RS03120 and DDA3937_RS03125 overlap by 7 nucleotides DDA3937_RS03125 and DDA3937_RS03130 overlap by 14 nucleotides
DDA3937_RS03115: DDA3937_RS03115 - U32 family peptidase, at 687,812 to 688,810
_RS03115
DDA3937_RS03120: DDA3937_RS03120 - SCP2 domain-containing protein, at 689,131 to 689,655
_RS03120
DDA3937_RS03125: DDA3937_RS03125 - N-acetyltransferase, at 689,649 to 690,152
_RS03125
DDA3937_RS03130: DDA3937_RS03130 - GIY-YIG nuclease family protein, at 690,139 to 690,513
_RS03130
Position (kb) 689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 688.267 kb on - strand, within DDA3937_RS03115 at 688.267 kb on - strand, within DDA3937_RS03115 at 688.267 kb on - strand, within DDA3937_RS03115 at 688.278 kb on + strand, within DDA3937_RS03115 at 688.503 kb on + strand, within DDA3937_RS03115 at 688.591 kb on - strand, within DDA3937_RS03115 at 688.624 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.649 kb on + strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.650 kb on - strand, within DDA3937_RS03115 at 688.653 kb on + strand, within DDA3937_RS03115 at 688.653 kb on + strand, within DDA3937_RS03115 at 688.653 kb on + strand, within DDA3937_RS03115 at 688.654 kb on - strand, within DDA3937_RS03115 at 688.654 kb on - strand, within DDA3937_RS03115 at 688.654 kb on - strand, within DDA3937_RS03115 at 688.654 kb on - strand, within DDA3937_RS03115 at 688.654 kb on - strand, within DDA3937_RS03115 at 688.737 kb on + strand at 688.814 kb on + strand at 688.814 kb on + strand at 688.814 kb on + strand at 688.814 kb on + strand at 688.815 kb on - strand at 688.815 kb on - strand at 688.815 kb on - strand at 688.815 kb on - strand at 688.815 kb on - strand at 688.883 kb on + strand at 688.911 kb on - strand at 688.966 kb on + strand at 689.007 kb on - strand at 689.016 kb on + strand at 689.016 kb on + strand at 689.047 kb on + strand at 689.047 kb on + strand at 689.048 kb on - strand at 689.048 kb on - strand at 689.048 kb on - strand at 689.084 kb on + strand at 689.084 kb on + strand at 689.085 kb on - strand at 689.085 kb on - strand at 689.116 kb on - strand at 689.124 kb on + strand at 689.124 kb on + strand at 689.124 kb on + strand at 689.125 kb on - strand at 689.125 kb on - strand at 689.184 kb on + strand, within DDA3937_RS03120 at 689.185 kb on - strand at 689.185 kb on - strand, within DDA3937_RS03120 at 689.185 kb on - strand, within DDA3937_RS03120 at 689.377 kb on - strand, within DDA3937_RS03120 at 689.509 kb on + strand, within DDA3937_RS03120 at 689.509 kb on + strand, within DDA3937_RS03120 at 689.509 kb on + strand, within DDA3937_RS03120 at 689.509 kb on + strand, within DDA3937_RS03120 at 689.510 kb on - strand, within DDA3937_RS03120 at 689.510 kb on - strand, within DDA3937_RS03120 at 689.510 kb on - strand, within DDA3937_RS03120 at 689.510 kb on - strand, within DDA3937_RS03120 at 689.777 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.929 kb on - strand, within DDA3937_RS03125 at 689.929 kb on - strand, within DDA3937_RS03125 at 689.961 kb on + strand, within DDA3937_RS03125 at 689.961 kb on + strand, within DDA3937_RS03125 at 689.964 kb on - strand, within DDA3937_RS03125 at 689.995 kb on - strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.079 kb on - strand, within DDA3937_RS03125 at 690.126 kb on + strand at 690.150 kb on + strand at 690.236 kb on + strand, within DDA3937_RS03130 at 690.237 kb on - strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.370 kb on - strand, within DDA3937_RS03130 at 690.370 kb on - strand, within DDA3937_RS03130 at 690.380 kb on + strand, within DDA3937_RS03130 at 690.411 kb on - strand, within DDA3937_RS03130 at 690.411 kb on - strand, within DDA3937_RS03130 at 690.426 kb on + strand, within DDA3937_RS03130 at 690.426 kb on + strand, within DDA3937_RS03130 at 690.427 kb on - strand, within DDA3937_RS03130 at 690.427 kb on - strand, within DDA3937_RS03130 at 690.469 kb on + strand, within DDA3937_RS03130 at 690.470 kb on - strand, within DDA3937_RS03130 at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.550 kb on - strand at 690.550 kb on - strand at 690.556 kb on - strand at 690.559 kb on + strand at 690.559 kb on + strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.574 kb on + strand at 690.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 688,267 - DDA3937_RS03115 0.46 -1.4 688,267 - DDA3937_RS03115 0.46 -1.3 688,267 - DDA3937_RS03115 0.46 +3.3 688,278 + DDA3937_RS03115 0.47 -0.6 688,503 + DDA3937_RS03115 0.69 -0.3 688,591 - DDA3937_RS03115 0.78 +1.1 688,624 + DDA3937_RS03115 0.81 -1.1 688,649 + DDA3937_RS03115 0.84 +0.2 688,649 + DDA3937_RS03115 0.84 -0.4 688,649 + DDA3937_RS03115 0.84 +1.1 688,649 + DDA3937_RS03115 0.84 +0.0 688,649 + DDA3937_RS03115 0.84 +0.4 688,649 + DDA3937_RS03115 0.84 -0.1 688,649 + DDA3937_RS03115 0.84 -0.9 688,650 - DDA3937_RS03115 0.84 -2.3 688,650 - DDA3937_RS03115 0.84 -0.5 688,650 - DDA3937_RS03115 0.84 -0.2 688,650 - DDA3937_RS03115 0.84 -1.1 688,650 - DDA3937_RS03115 0.84 +2.9 688,650 - DDA3937_RS03115 0.84 +1.3 688,650 - DDA3937_RS03115 0.84 -1.7 688,653 + DDA3937_RS03115 0.84 -1.4 688,653 + DDA3937_RS03115 0.84 +0.1 688,653 + DDA3937_RS03115 0.84 +0.2 688,654 - DDA3937_RS03115 0.84 +0.6 688,654 - DDA3937_RS03115 0.84 -1.6 688,654 - DDA3937_RS03115 0.84 -0.3 688,654 - DDA3937_RS03115 0.84 +3.0 688,654 - DDA3937_RS03115 0.84 -1.6 688,737 + -1.1 688,814 + +0.1 688,814 + +0.8 688,814 + -1.4 688,814 + +0.4 688,815 - -0.4 688,815 - +3.0 688,815 - +1.0 688,815 - -0.6 688,815 - -0.3 688,883 + +0.3 688,911 - +0.4 688,966 + -1.3 689,007 - +0.1 689,016 + +1.1 689,016 + +1.7 689,047 + -0.8 689,047 + -1.7 689,048 - -0.1 689,048 - -0.2 689,048 - +0.2 689,084 + +0.8 689,084 + -0.8 689,085 - -0.9 689,085 - -0.6 689,116 - -0.4 689,124 + +0.0 689,124 + -2.9 689,124 + +1.1 689,125 - -1.3 689,125 - -2.2 689,184 + DDA3937_RS03120 0.10 -1.7 689,185 - +2.2 689,185 - DDA3937_RS03120 0.10 +0.2 689,185 - DDA3937_RS03120 0.10 +0.1 689,377 - DDA3937_RS03120 0.47 -1.9 689,509 + DDA3937_RS03120 0.72 -1.3 689,509 + DDA3937_RS03120 0.72 -0.8 689,509 + DDA3937_RS03120 0.72 -0.8 689,509 + DDA3937_RS03120 0.72 +0.2 689,510 - DDA3937_RS03120 0.72 -1.7 689,510 - DDA3937_RS03120 0.72 -2.3 689,510 - DDA3937_RS03120 0.72 +0.7 689,510 - DDA3937_RS03120 0.72 -1.3 689,777 + DDA3937_RS03125 0.25 -0.4 689,928 + DDA3937_RS03125 0.55 -0.4 689,928 + DDA3937_RS03125 0.55 +0.3 689,928 + DDA3937_RS03125 0.55 -0.2 689,928 + DDA3937_RS03125 0.55 -0.4 689,928 + DDA3937_RS03125 0.55 -0.8 689,929 - DDA3937_RS03125 0.56 +0.2 689,929 - DDA3937_RS03125 0.56 -0.8 689,961 + DDA3937_RS03125 0.62 +0.8 689,961 + DDA3937_RS03125 0.62 -0.7 689,964 - DDA3937_RS03125 0.62 +0.7 689,995 - DDA3937_RS03125 0.69 +0.1 690,039 + DDA3937_RS03125 0.77 -0.1 690,039 + DDA3937_RS03125 0.77 +0.4 690,039 + DDA3937_RS03125 0.77 -1.4 690,039 + DDA3937_RS03125 0.77 -0.2 690,039 + DDA3937_RS03125 0.77 -0.3 690,039 + DDA3937_RS03125 0.77 -0.9 690,040 - DDA3937_RS03125 0.78 +0.1 690,040 - DDA3937_RS03125 0.78 -0.9 690,040 - DDA3937_RS03125 0.78 +2.1 690,079 - DDA3937_RS03125 0.85 -0.3 690,126 + +0.9 690,150 + -1.4 690,236 + DDA3937_RS03130 0.26 -1.1 690,237 - DDA3937_RS03130 0.26 -0.5 690,281 + DDA3937_RS03130 0.38 -1.0 690,281 + DDA3937_RS03130 0.38 +0.7 690,281 + DDA3937_RS03130 0.38 -2.9 690,281 + DDA3937_RS03130 0.38 -1.4 690,281 + DDA3937_RS03130 0.38 -0.6 690,281 + DDA3937_RS03130 0.38 -0.3 690,281 + DDA3937_RS03130 0.38 -0.3 690,282 - DDA3937_RS03130 0.38 +2.1 690,282 - DDA3937_RS03130 0.38 -1.1 690,282 - DDA3937_RS03130 0.38 -1.6 690,358 + DDA3937_RS03130 0.58 -1.3 690,358 + DDA3937_RS03130 0.58 +1.8 690,358 + DDA3937_RS03130 0.58 -1.0 690,358 + DDA3937_RS03130 0.58 -1.6 690,358 + DDA3937_RS03130 0.58 -2.2 690,358 + DDA3937_RS03130 0.58 +0.6 690,358 + DDA3937_RS03130 0.58 -0.3 690,358 + DDA3937_RS03130 0.58 +0.3 690,359 - DDA3937_RS03130 0.59 -2.0 690,359 - DDA3937_RS03130 0.59 -1.0 690,359 - DDA3937_RS03130 0.59 -2.4 690,359 - DDA3937_RS03130 0.59 +0.3 690,370 - DDA3937_RS03130 0.62 -0.1 690,370 - DDA3937_RS03130 0.62 +0.7 690,380 + DDA3937_RS03130 0.64 -0.7 690,411 - DDA3937_RS03130 0.73 +0.3 690,411 - DDA3937_RS03130 0.73 +4.5 690,426 + DDA3937_RS03130 0.77 +0.1 690,426 + DDA3937_RS03130 0.77 -1.8 690,427 - DDA3937_RS03130 0.77 -0.8 690,427 - DDA3937_RS03130 0.77 -0.4 690,469 + DDA3937_RS03130 0.88 +0.1 690,470 - DDA3937_RS03130 0.88 +0.2 690,549 + -1.2 690,549 + -0.2 690,549 + -1.5 690,549 + -0.3 690,549 + -1.4 690,549 + -3.4 690,550 - -0.7 690,550 - +0.8 690,556 - +1.4 690,559 + -1.1 690,559 + -0.3 690,560 - +1.3 690,560 - -3.1 690,560 - -1.7 690,560 - -0.4 690,560 - +0.1 690,574 + -0.5 690,635 - -2.1
Or see this region's nucleotide sequence