Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02560 and DDA3937_RS02565 are separated by 400 nucleotides DDA3937_RS02565 and DDA3937_RS02570 overlap by 11 nucleotides
DDA3937_RS02560: DDA3937_RS02560 - L-talarate/galactarate dehydratase, at 566,167 to 567,366
_RS02560
DDA3937_RS02565: DDA3937_RS02565 - undecaprenyl-phosphate glucose phosphotransferase, at 567,767 to 569,173
_RS02565
DDA3937_RS02570: DDA3937_RS02570 - outer membrane beta-barrel protein, at 569,163 to 570,449
_RS02570
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 566.769 kb on + strand, within DDA3937_RS02560 at 566.963 kb on + strand, within DDA3937_RS02560 at 567.238 kb on - strand, within DDA3937_RS02560 at 567.322 kb on - strand at 567.356 kb on - strand at 567.433 kb on - strand at 567.460 kb on - strand at 567.460 kb on - strand at 567.460 kb on - strand at 567.621 kb on + strand at 567.709 kb on - strand at 567.772 kb on + strand at 567.772 kb on + strand at 567.776 kb on - strand at 567.783 kb on + strand at 567.852 kb on + strand at 567.853 kb on - strand at 567.870 kb on + strand at 567.937 kb on + strand, within DDA3937_RS02565 at 567.957 kb on + strand, within DDA3937_RS02565 at 567.958 kb on - strand, within DDA3937_RS02565 at 567.958 kb on - strand, within DDA3937_RS02565 at 567.959 kb on + strand, within DDA3937_RS02565 at 567.960 kb on - strand, within DDA3937_RS02565 at 567.960 kb on - strand, within DDA3937_RS02565 at 568.021 kb on - strand, within DDA3937_RS02565 at 568.083 kb on + strand, within DDA3937_RS02565 at 568.102 kb on + strand, within DDA3937_RS02565 at 568.103 kb on - strand, within DDA3937_RS02565 at 568.103 kb on - strand, within DDA3937_RS02565 at 568.124 kb on + strand, within DDA3937_RS02565 at 568.131 kb on - strand, within DDA3937_RS02565 at 568.133 kb on - strand, within DDA3937_RS02565 at 568.155 kb on - strand, within DDA3937_RS02565 at 568.155 kb on - strand, within DDA3937_RS02565 at 568.172 kb on - strand, within DDA3937_RS02565 at 568.258 kb on + strand, within DDA3937_RS02565 at 568.296 kb on - strand, within DDA3937_RS02565 at 568.326 kb on - strand, within DDA3937_RS02565 at 568.345 kb on + strand, within DDA3937_RS02565 at 568.346 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565 at 568.404 kb on - strand, within DDA3937_RS02565 at 568.405 kb on + strand, within DDA3937_RS02565 at 568.429 kb on - strand, within DDA3937_RS02565 at 568.443 kb on - strand, within DDA3937_RS02565 at 568.477 kb on + strand, within DDA3937_RS02565 at 568.478 kb on - strand, within DDA3937_RS02565 at 568.481 kb on + strand, within DDA3937_RS02565 at 568.481 kb on + strand, within DDA3937_RS02565 at 568.482 kb on - strand, within DDA3937_RS02565 at 568.482 kb on - strand, within DDA3937_RS02565 at 568.482 kb on - strand, within DDA3937_RS02565 at 568.482 kb on - strand, within DDA3937_RS02565 at 568.482 kb on - strand, within DDA3937_RS02565 at 568.500 kb on - strand, within DDA3937_RS02565 at 568.506 kb on - strand, within DDA3937_RS02565 at 568.506 kb on - strand, within DDA3937_RS02565 at 568.514 kb on + strand, within DDA3937_RS02565 at 568.540 kb on + strand, within DDA3937_RS02565 at 568.559 kb on - strand, within DDA3937_RS02565 at 568.633 kb on + strand, within DDA3937_RS02565 at 568.634 kb on - strand, within DDA3937_RS02565 at 568.669 kb on + strand, within DDA3937_RS02565 at 568.676 kb on - strand, within DDA3937_RS02565 at 568.676 kb on - strand, within DDA3937_RS02565 at 568.887 kb on + strand, within DDA3937_RS02565 at 568.887 kb on + strand, within DDA3937_RS02565 at 568.887 kb on + strand, within DDA3937_RS02565 at 568.888 kb on - strand, within DDA3937_RS02565 at 568.888 kb on - strand, within DDA3937_RS02565 at 568.888 kb on - strand, within DDA3937_RS02565 at 568.888 kb on - strand, within DDA3937_RS02565 at 568.970 kb on + strand, within DDA3937_RS02565 at 568.971 kb on - strand, within DDA3937_RS02565 at 568.971 kb on - strand, within DDA3937_RS02565 at 569.053 kb on + strand at 569.053 kb on + strand at 569.075 kb on + strand at 569.076 kb on - strand at 569.076 kb on - strand at 569.087 kb on + strand at 569.087 kb on + strand at 569.088 kb on - strand at 569.088 kb on - strand at 569.090 kb on - strand at 569.090 kb on - strand at 569.132 kb on - strand at 569.169 kb on - strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.197 kb on + strand at 569.197 kb on + strand at 569.198 kb on - strand at 569.198 kb on - strand at 569.198 kb on - strand at 569.198 kb on - strand at 569.198 kb on - strand at 569.201 kb on - strand at 569.286 kb on + strand at 569.295 kb on - strand, within DDA3937_RS02570 at 569.310 kb on + strand, within DDA3937_RS02570 at 569.310 kb on + strand, within DDA3937_RS02570 at 569.311 kb on - strand at 569.370 kb on - strand, within DDA3937_RS02570 at 569.370 kb on - strand, within DDA3937_RS02570 at 569.370 kb on - strand, within DDA3937_RS02570 at 569.400 kb on + strand, within DDA3937_RS02570 at 569.401 kb on - strand, within DDA3937_RS02570 at 569.401 kb on - strand, within DDA3937_RS02570 at 569.412 kb on + strand, within DDA3937_RS02570 at 569.413 kb on - strand, within DDA3937_RS02570 at 569.413 kb on - strand, within DDA3937_RS02570 at 569.413 kb on - strand, within DDA3937_RS02570 at 569.413 kb on - strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.458 kb on - strand, within DDA3937_RS02570 at 569.568 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand at 569.658 kb on + strand, within DDA3937_RS02570 at 569.659 kb on - strand, within DDA3937_RS02570 at 569.705 kb on + strand, within DDA3937_RS02570 at 569.738 kb on + strand, within DDA3937_RS02570 at 569.739 kb on - strand, within DDA3937_RS02570 at 569.745 kb on - strand, within DDA3937_RS02570 at 569.755 kb on - strand, within DDA3937_RS02570 at 569.760 kb on + strand, within DDA3937_RS02570 at 569.763 kb on - strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.813 kb on - strand, within DDA3937_RS02570 at 569.823 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.908 kb on - strand, within DDA3937_RS02570 at 569.927 kb on + strand, within DDA3937_RS02570 at 569.977 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.980 kb on - strand, within DDA3937_RS02570 at 569.980 kb on - strand, within DDA3937_RS02570 at 570.035 kb on + strand, within DDA3937_RS02570 at 570.059 kb on + strand, within DDA3937_RS02570 at 570.095 kb on + strand, within DDA3937_RS02570 at 570.126 kb on - strand, within DDA3937_RS02570 at 570.141 kb on + strand, within DDA3937_RS02570 at 570.142 kb on - strand, within DDA3937_RS02570 at 570.146 kb on + strand, within DDA3937_RS02570 at 570.146 kb on + strand, within DDA3937_RS02570 at 570.153 kb on + strand, within DDA3937_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 566,769 + DDA3937_RS02560 0.50 -1.5 566,963 + DDA3937_RS02560 0.66 -0.6 567,238 - DDA3937_RS02560 0.89 +0.8 567,322 - +0.2 567,356 - -0.7 567,433 - +1.3 567,460 - -0.7 567,460 - +0.8 567,460 - -2.0 567,621 + +2.1 567,709 - +0.5 567,772 + -2.3 567,772 + -0.6 567,776 - -1.4 567,783 + -1.6 567,852 + -1.7 567,853 - -1.4 567,870 + -0.2 567,937 + DDA3937_RS02565 0.12 -2.8 567,957 + DDA3937_RS02565 0.14 -1.8 567,958 - DDA3937_RS02565 0.14 -2.4 567,958 - DDA3937_RS02565 0.14 -1.6 567,959 + DDA3937_RS02565 0.14 +0.8 567,960 - DDA3937_RS02565 0.14 +0.2 567,960 - DDA3937_RS02565 0.14 -2.6 568,021 - DDA3937_RS02565 0.18 -1.8 568,083 + DDA3937_RS02565 0.22 -1.0 568,102 + DDA3937_RS02565 0.24 +2.3 568,103 - DDA3937_RS02565 0.24 -0.9 568,103 - DDA3937_RS02565 0.24 +2.2 568,124 + DDA3937_RS02565 0.25 -2.4 568,131 - DDA3937_RS02565 0.26 -1.6 568,133 - DDA3937_RS02565 0.26 -1.1 568,155 - DDA3937_RS02565 0.28 -1.1 568,155 - DDA3937_RS02565 0.28 -0.8 568,172 - DDA3937_RS02565 0.29 -1.3 568,258 + DDA3937_RS02565 0.35 -2.2 568,296 - DDA3937_RS02565 0.38 -0.5 568,326 - DDA3937_RS02565 0.40 -0.4 568,345 + DDA3937_RS02565 0.41 -0.7 568,346 - DDA3937_RS02565 0.41 -2.0 568,352 - DDA3937_RS02565 0.42 -0.4 568,352 - DDA3937_RS02565 0.42 -0.3 568,352 - DDA3937_RS02565 0.42 -1.0 568,404 - DDA3937_RS02565 0.45 -1.0 568,405 + DDA3937_RS02565 0.45 -0.5 568,429 - DDA3937_RS02565 0.47 -1.6 568,443 - DDA3937_RS02565 0.48 +0.0 568,477 + DDA3937_RS02565 0.50 -1.2 568,478 - DDA3937_RS02565 0.51 -0.8 568,481 + DDA3937_RS02565 0.51 -1.1 568,481 + DDA3937_RS02565 0.51 -1.7 568,482 - DDA3937_RS02565 0.51 -1.1 568,482 - DDA3937_RS02565 0.51 -1.9 568,482 - DDA3937_RS02565 0.51 -1.4 568,482 - DDA3937_RS02565 0.51 -0.4 568,482 - DDA3937_RS02565 0.51 -1.2 568,500 - DDA3937_RS02565 0.52 -1.7 568,506 - DDA3937_RS02565 0.53 -1.6 568,506 - DDA3937_RS02565 0.53 -2.8 568,514 + DDA3937_RS02565 0.53 -0.5 568,540 + DDA3937_RS02565 0.55 -0.5 568,559 - DDA3937_RS02565 0.56 +0.7 568,633 + DDA3937_RS02565 0.62 -0.4 568,634 - DDA3937_RS02565 0.62 -1.3 568,669 + DDA3937_RS02565 0.64 -3.6 568,676 - DDA3937_RS02565 0.65 -0.2 568,676 - DDA3937_RS02565 0.65 -1.7 568,887 + DDA3937_RS02565 0.80 -0.2 568,887 + DDA3937_RS02565 0.80 -0.2 568,887 + DDA3937_RS02565 0.80 -2.6 568,888 - DDA3937_RS02565 0.80 -0.8 568,888 - DDA3937_RS02565 0.80 -1.3 568,888 - DDA3937_RS02565 0.80 +1.5 568,888 - DDA3937_RS02565 0.80 -1.3 568,970 + DDA3937_RS02565 0.86 -0.5 568,971 - DDA3937_RS02565 0.86 -1.4 568,971 - DDA3937_RS02565 0.86 -0.4 569,053 + -1.2 569,053 + -2.0 569,075 + +0.7 569,076 - +0.6 569,076 - -2.7 569,087 + -1.5 569,087 + +0.1 569,088 - -0.2 569,088 - -1.9 569,090 - -1.0 569,090 - +2.6 569,132 - +0.0 569,169 - -0.6 569,171 + +0.4 569,171 + -0.6 569,171 + +2.0 569,197 + -0.4 569,197 + -0.4 569,198 - -1.4 569,198 - -0.1 569,198 - -0.7 569,198 - -1.5 569,198 - -0.6 569,201 - +0.6 569,286 + -1.8 569,295 - DDA3937_RS02570 0.10 -1.0 569,310 + DDA3937_RS02570 0.11 -1.5 569,310 + DDA3937_RS02570 0.11 +2.0 569,311 - +1.8 569,370 - DDA3937_RS02570 0.16 -1.1 569,370 - DDA3937_RS02570 0.16 -0.8 569,370 - DDA3937_RS02570 0.16 +0.5 569,400 + DDA3937_RS02570 0.18 -0.9 569,401 - DDA3937_RS02570 0.18 +1.4 569,401 - DDA3937_RS02570 0.18 -1.4 569,412 + DDA3937_RS02570 0.19 +0.8 569,413 - DDA3937_RS02570 0.19 -2.8 569,413 - DDA3937_RS02570 0.19 -2.4 569,413 - DDA3937_RS02570 0.19 -2.1 569,413 - DDA3937_RS02570 0.19 -1.2 569,457 + DDA3937_RS02570 0.23 -0.9 569,457 + DDA3937_RS02570 0.23 -1.5 569,457 + DDA3937_RS02570 0.23 +0.2 569,457 + DDA3937_RS02570 0.23 +0.5 569,458 - DDA3937_RS02570 0.23 -1.2 569,568 - DDA3937_RS02570 0.31 -1.8 569,648 - DDA3937_RS02570 0.38 +0.8 569,648 - DDA3937_RS02570 0.38 +1.0 569,648 - DDA3937_RS02570 0.38 -2.1 569,654 + DDA3937_RS02570 0.38 -0.1 569,654 + DDA3937_RS02570 0.38 +1.2 569,654 + DDA3937_RS02570 0.38 -0.7 569,654 + DDA3937_RS02570 0.38 +0.7 569,654 + DDA3937_RS02570 0.38 -2.0 569,654 + DDA3937_RS02570 0.38 -1.4 569,654 + DDA3937_RS02570 0.38 -3.8 569,654 + DDA3937_RS02570 0.38 +1.1 569,654 + DDA3937_RS02570 0.38 +0.0 569,654 + DDA3937_RS02570 0.38 -0.3 569,654 + DDA3937_RS02570 0.38 -0.5 569,654 + DDA3937_RS02570 0.38 -0.2 569,654 + DDA3937_RS02570 0.38 -2.0 569,655 - DDA3937_RS02570 0.38 +1.0 569,655 - DDA3937_RS02570 0.38 -1.8 569,655 - DDA3937_RS02570 0.38 -1.2 569,655 - DDA3937_RS02570 0.38 +2.1 569,655 - DDA3937_RS02570 0.38 -1.0 569,655 - DDA3937_RS02570 0.38 -0.1 569,655 - DDA3937_RS02570 0.38 +1.5 569,655 - -0.5 569,655 - DDA3937_RS02570 0.38 -1.0 569,655 - DDA3937_RS02570 0.38 -1.9 569,655 - DDA3937_RS02570 0.38 -1.2 569,655 - +0.2 569,658 + DDA3937_RS02570 0.38 +0.9 569,659 - DDA3937_RS02570 0.39 -0.8 569,705 + DDA3937_RS02570 0.42 -2.7 569,738 + DDA3937_RS02570 0.45 +0.4 569,739 - DDA3937_RS02570 0.45 +0.1 569,745 - DDA3937_RS02570 0.45 -1.6 569,755 - DDA3937_RS02570 0.46 -1.6 569,760 + DDA3937_RS02570 0.46 -1.1 569,763 - DDA3937_RS02570 0.47 -2.3 569,766 + DDA3937_RS02570 0.47 -2.0 569,766 + DDA3937_RS02570 0.47 -2.0 569,766 + DDA3937_RS02570 0.47 +0.8 569,767 - DDA3937_RS02570 0.47 +3.7 569,767 - DDA3937_RS02570 0.47 -0.9 569,767 - DDA3937_RS02570 0.47 +0.4 569,767 - DDA3937_RS02570 0.47 -0.5 569,813 - DDA3937_RS02570 0.51 -1.0 569,823 + DDA3937_RS02570 0.51 -0.5 569,907 + DDA3937_RS02570 0.58 -0.5 569,907 + DDA3937_RS02570 0.58 -2.7 569,907 + DDA3937_RS02570 0.58 -0.5 569,908 - DDA3937_RS02570 0.58 -0.5 569,927 + DDA3937_RS02570 0.59 -1.0 569,977 + DDA3937_RS02570 0.63 +2.8 569,979 + DDA3937_RS02570 0.63 +0.8 569,979 + DDA3937_RS02570 0.63 -1.6 569,979 + DDA3937_RS02570 0.63 -0.2 569,980 - DDA3937_RS02570 0.63 -1.4 569,980 - DDA3937_RS02570 0.63 -1.4 570,035 + DDA3937_RS02570 0.68 -2.6 570,059 + DDA3937_RS02570 0.70 -0.5 570,095 + DDA3937_RS02570 0.72 -1.6 570,126 - DDA3937_RS02570 0.75 +0.8 570,141 + DDA3937_RS02570 0.76 +0.5 570,142 - DDA3937_RS02570 0.76 -1.0 570,146 + DDA3937_RS02570 0.76 -0.6 570,146 + DDA3937_RS02570 0.76 +0.7 570,153 + DDA3937_RS02570 0.77 -1.4
Or see this region's nucleotide sequence