Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01890 and DDA3937_RS01895 are separated by 27 nucleotides DDA3937_RS01895 and DDA3937_RS01900 overlap by 4 nucleotides
DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404
_RS01890
DDA3937_RS01895: DDA3937_RS01895 - ABC transporter permease, at 423,432 to 424,247
_RS01895
DDA3937_RS01900: DDA3937_RS01900 - ABC transporter ATP-binding protein, at 424,244 to 425,851
_RS01900
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 422.898 kb on + strand, within DDA3937_RS01890 at 422.902 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 423.067 kb on + strand, within DDA3937_RS01890 at 423.068 kb on - strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.180 kb on - strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.330 kb on + strand at 423.330 kb on + strand at 423.330 kb on + strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.423 kb on + strand at 423.424 kb on - strand at 423.424 kb on - strand at 423.796 kb on + strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.865 kb on + strand, within DDA3937_RS01895 at 423.868 kb on + strand, within DDA3937_RS01895 at 424.211 kb on - strand at 424.211 kb on - strand at 424.226 kb on + strand at 424.226 kb on + strand at 424.319 kb on - strand at 424.324 kb on + strand at 424.324 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.328 kb on - strand at 424.328 kb on - strand at 424.414 kb on + strand, within DDA3937_RS01900 at 424.415 kb on - strand, within DDA3937_RS01900 at 424.421 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.524 kb on - strand, within DDA3937_RS01900 at 424.708 kb on - strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.874 kb on - strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.192 kb on - strand, within DDA3937_RS01900
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 422,898 + DDA3937_RS01890 0.46 -0.5 422,902 + DDA3937_RS01890 0.47 -1.7 422,966 + DDA3937_RS01890 0.54 -1.3 422,966 + DDA3937_RS01890 0.54 +0.2 422,966 + DDA3937_RS01890 0.54 -1.5 422,966 + DDA3937_RS01890 0.54 +1.9 422,967 - DDA3937_RS01890 0.54 -0.1 422,967 - DDA3937_RS01890 0.54 +0.3 422,967 - -0.1 422,967 - DDA3937_RS01890 0.54 -0.3 422,967 - DDA3937_RS01890 0.54 -0.9 423,067 + DDA3937_RS01890 0.64 -0.7 423,068 - DDA3937_RS01890 0.64 -3.0 423,087 + DDA3937_RS01890 0.66 +1.1 423,087 + DDA3937_RS01890 0.66 +1.3 423,088 - DDA3937_RS01890 0.66 -0.7 423,088 - DDA3937_RS01890 0.66 -1.5 423,088 - DDA3937_RS01890 0.66 -1.8 423,088 - DDA3937_RS01890 0.66 -1.3 423,145 + DDA3937_RS01890 0.72 -0.8 423,145 + DDA3937_RS01890 0.72 -2.2 423,145 + DDA3937_RS01890 0.72 -2.6 423,145 + DDA3937_RS01890 0.72 -0.6 423,145 + DDA3937_RS01890 0.72 -1.0 423,146 - DDA3937_RS01890 0.73 -1.3 423,146 - DDA3937_RS01890 0.73 -0.2 423,180 - DDA3937_RS01890 0.76 -1.1 423,188 + DDA3937_RS01890 0.77 +1.0 423,188 + DDA3937_RS01890 0.77 +0.6 423,189 - DDA3937_RS01890 0.77 +0.5 423,189 - DDA3937_RS01890 0.77 +0.8 423,189 - DDA3937_RS01890 0.77 +0.6 423,198 + DDA3937_RS01890 0.78 +1.4 423,198 + DDA3937_RS01890 0.78 -1.7 423,198 + DDA3937_RS01890 0.78 +0.0 423,199 - DDA3937_RS01890 0.78 +0.2 423,199 - DDA3937_RS01890 0.78 +0.6 423,199 - DDA3937_RS01890 0.78 -0.3 423,258 + DDA3937_RS01890 0.84 -0.3 423,258 + DDA3937_RS01890 0.84 -0.8 423,258 + DDA3937_RS01890 0.84 -1.5 423,258 + DDA3937_RS01890 0.84 +0.2 423,258 + DDA3937_RS01890 0.84 -0.5 423,258 + DDA3937_RS01890 0.84 -1.7 423,258 + DDA3937_RS01890 0.84 -0.7 423,259 - DDA3937_RS01890 0.85 -2.6 423,259 - DDA3937_RS01890 0.85 -0.9 423,259 - DDA3937_RS01890 0.85 -0.7 423,259 - DDA3937_RS01890 0.85 -0.2 423,259 - DDA3937_RS01890 0.85 -1.1 423,259 - DDA3937_RS01890 0.85 -0.5 423,259 - DDA3937_RS01890 0.85 -0.4 423,330 + -0.5 423,330 + -1.8 423,330 + -1.5 423,331 - +0.4 423,331 - -0.7 423,331 - -0.3 423,331 - -0.6 423,423 + +0.3 423,424 - -1.6 423,424 - -1.5 423,796 + DDA3937_RS01895 0.45 -0.9 423,797 - DDA3937_RS01895 0.45 -0.5 423,797 - DDA3937_RS01895 0.45 -1.1 423,865 + DDA3937_RS01895 0.53 -2.6 423,868 + DDA3937_RS01895 0.53 -0.2 424,211 - -0.9 424,211 - -0.3 424,226 + +1.0 424,226 + +0.3 424,319 - -0.0 424,324 + +2.7 424,324 + -0.5 424,327 + +1.6 424,327 + -0.9 424,327 + +0.3 424,328 - +0.3 424,328 - -1.3 424,414 + DDA3937_RS01900 0.11 +0.8 424,415 - DDA3937_RS01900 0.11 +0.3 424,421 - DDA3937_RS01900 0.11 +0.6 424,436 - DDA3937_RS01900 0.12 -1.3 424,436 - DDA3937_RS01900 0.12 -1.7 424,436 - DDA3937_RS01900 0.12 +0.3 424,436 - DDA3937_RS01900 0.12 -1.1 424,436 - DDA3937_RS01900 0.12 -0.9 424,436 - DDA3937_RS01900 0.12 -0.4 424,524 - DDA3937_RS01900 0.17 -2.0 424,708 - DDA3937_RS01900 0.29 -0.7 424,871 + DDA3937_RS01900 0.39 +0.3 424,871 + DDA3937_RS01900 0.39 +0.3 424,871 + DDA3937_RS01900 0.39 -0.6 424,871 + DDA3937_RS01900 0.39 -1.1 424,871 + DDA3937_RS01900 0.39 -2.0 424,871 + DDA3937_RS01900 0.39 -1.5 424,872 - DDA3937_RS01900 0.39 -1.2 424,872 - DDA3937_RS01900 0.39 -0.7 424,872 - DDA3937_RS01900 0.39 -0.6 424,872 - DDA3937_RS01900 0.39 +1.5 424,873 + DDA3937_RS01900 0.39 +4.7 424,873 + DDA3937_RS01900 0.39 +1.5 424,873 + DDA3937_RS01900 0.39 +0.1 424,874 - DDA3937_RS01900 0.39 -1.1 424,991 + DDA3937_RS01900 0.46 -0.5 424,991 + DDA3937_RS01900 0.46 -0.7 424,991 + -0.1 424,992 - DDA3937_RS01900 0.47 -0.9 424,992 - DDA3937_RS01900 0.47 +0.4 424,992 - DDA3937_RS01900 0.47 -1.0 424,992 - DDA3937_RS01900 0.47 +1.1 425,115 + DDA3937_RS01900 0.54 -0.7 425,115 + DDA3937_RS01900 0.54 -0.9 425,116 - DDA3937_RS01900 0.54 -1.7 425,116 - DDA3937_RS01900 0.54 -0.9 425,192 - DDA3937_RS01900 0.59 -0.2
Or see this region's nucleotide sequence