Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01590

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01580 and DDA3937_RS01585 overlap by 8 nucleotidesDDA3937_RS01585 and DDA3937_RS01590 are separated by 132 nucleotidesDDA3937_RS01590 and DDA3937_RS01595 are separated by 57 nucleotides DDA3937_RS01580: DDA3937_RS01580 - phospholipid-binding protein MlaC, at 349,403 to 350,056 _RS01580 DDA3937_RS01585: DDA3937_RS01585 - lipid asymmetry maintenance protein MlaB, at 350,049 to 350,351 _RS01585 DDA3937_RS01590: DDA3937_RS01590 - BolA family iron metabolism protein IbaG, at 350,484 to 350,738 _RS01590 DDA3937_RS01595: DDA3937_RS01595 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 350,796 to 352,058 _RS01595 Position (kb) 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 349.492 kb on + strand, within DDA3937_RS01580at 349.493 kb on - strand, within DDA3937_RS01580at 349.499 kb on + strand, within DDA3937_RS01580at 349.543 kb on + strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.565 kb on - strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.631 kb on + strandat 349.632 kb on - strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.694 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.716 kb on - strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.767 kb on - strand, within DDA3937_RS01580at 349.876 kb on + strand, within DDA3937_RS01580at 349.876 kb on + strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.907 kb on + strand, within DDA3937_RS01580at 349.907 kb on + strand, within DDA3937_RS01580at 349.908 kb on - strand, within DDA3937_RS01580at 349.908 kb on - strand, within DDA3937_RS01580at 349.939 kb on + strand, within DDA3937_RS01580at 349.940 kb on - strand, within DDA3937_RS01580at 350.118 kb on - strand, within DDA3937_RS01585at 350.233 kb on - strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.310 kb on + strand, within DDA3937_RS01585at 350.310 kb on + strand, within DDA3937_RS01585at 350.310 kb on + strandat 350.310 kb on + strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.416 kb on + strandat 350.416 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.442 kb on + strandat 350.454 kb on + strandat 350.454 kb on + strandat 350.470 kb on + strandat 350.470 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.765 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
349,492 + DDA3937_RS01580 0.14 +1.2
349,493 - DDA3937_RS01580 0.14 -0.7
349,499 + DDA3937_RS01580 0.15 -2.1
349,543 + DDA3937_RS01580 0.21 -2.4
349,544 - DDA3937_RS01580 0.22 -0.8
349,544 - DDA3937_RS01580 0.22 -0.1
349,564 + DDA3937_RS01580 0.25 -1.1
349,564 + DDA3937_RS01580 0.25 -2.3
349,565 - DDA3937_RS01580 0.25 -1.9
349,580 + DDA3937_RS01580 0.27 +0.0
349,580 + DDA3937_RS01580 0.27 +1.4
349,580 + DDA3937_RS01580 0.27 -0.9
349,581 - DDA3937_RS01580 0.27 -1.7
349,581 - DDA3937_RS01580 0.27 -1.1
349,581 - DDA3937_RS01580 0.27 -0.8
349,616 + DDA3937_RS01580 0.33 -0.6
349,616 + DDA3937_RS01580 0.33 +0.4
349,616 + DDA3937_RS01580 0.33 -0.2
349,617 - DDA3937_RS01580 0.33 -0.0
349,617 - DDA3937_RS01580 0.33 +1.3
349,617 - DDA3937_RS01580 0.33 +0.9
349,617 - DDA3937_RS01580 0.33 +1.5
349,631 + +0.9
349,632 - DDA3937_RS01580 0.35 -0.6
349,661 + DDA3937_RS01580 0.39 -0.4
349,661 + DDA3937_RS01580 0.39 -0.9
349,661 + DDA3937_RS01580 0.39 -0.9
349,662 - DDA3937_RS01580 0.40 -1.7
349,662 - DDA3937_RS01580 0.40 +0.6
349,694 + DDA3937_RS01580 0.44 -0.9
349,715 + DDA3937_RS01580 0.48 -0.0
349,715 + DDA3937_RS01580 0.48 -0.7
349,716 - DDA3937_RS01580 0.48 +0.9
349,730 + DDA3937_RS01580 0.50 +0.4
349,730 + DDA3937_RS01580 0.50 +0.3
349,730 + DDA3937_RS01580 0.50 +0.5
349,731 - DDA3937_RS01580 0.50 -1.6
349,731 - DDA3937_RS01580 0.50 +1.0
349,751 + DDA3937_RS01580 0.53 -0.1
349,751 + DDA3937_RS01580 0.53 -1.6
349,751 + DDA3937_RS01580 0.53 -0.0
349,751 + DDA3937_RS01580 0.53 +1.0
349,751 + DDA3937_RS01580 0.53 -0.4
349,766 + DDA3937_RS01580 0.56 +3.0
349,766 + DDA3937_RS01580 0.56 -1.8
349,766 + DDA3937_RS01580 0.56 -0.7
349,766 + DDA3937_RS01580 0.56 -0.9
349,767 - DDA3937_RS01580 0.56 +1.0
349,876 + DDA3937_RS01580 0.72 -1.1
349,876 + DDA3937_RS01580 0.72 +0.1
349,877 - DDA3937_RS01580 0.72 -0.4
349,877 - DDA3937_RS01580 0.72 -0.3
349,877 - DDA3937_RS01580 0.72 +0.3
349,907 + DDA3937_RS01580 0.77 +0.1
349,907 + DDA3937_RS01580 0.77 -1.1
349,908 - DDA3937_RS01580 0.77 -0.7
349,908 - DDA3937_RS01580 0.77 -0.7
349,939 + DDA3937_RS01580 0.82 -0.4
349,940 - DDA3937_RS01580 0.82 -1.2
350,118 - DDA3937_RS01585 0.23 +0.9
350,233 - DDA3937_RS01585 0.61 -1.7
350,308 + DDA3937_RS01585 0.85 -0.7
350,308 + DDA3937_RS01585 0.85 -1.5
350,308 + DDA3937_RS01585 0.85 +0.8
350,308 + DDA3937_RS01585 0.85 +0.1
350,308 + DDA3937_RS01585 0.85 -2.2
350,308 + DDA3937_RS01585 0.85 -0.7
350,308 + DDA3937_RS01585 0.85 -1.8
350,309 - DDA3937_RS01585 0.86 +1.4
350,309 - DDA3937_RS01585 0.86 -1.7
350,309 - DDA3937_RS01585 0.86 +1.0
350,309 - DDA3937_RS01585 0.86 +2.0
350,309 - DDA3937_RS01585 0.86 -1.1
350,309 - DDA3937_RS01585 0.86 -1.0
350,310 + DDA3937_RS01585 0.86 +0.2
350,310 + DDA3937_RS01585 0.86 -1.6
350,310 + +0.3
350,310 + DDA3937_RS01585 0.86 +1.9
350,311 - DDA3937_RS01585 0.86 -0.6
350,311 - DDA3937_RS01585 0.86 -0.5
350,311 - DDA3937_RS01585 0.86 -1.8
350,312 + DDA3937_RS01585 0.87 -1.9
350,312 + DDA3937_RS01585 0.87 -0.6
350,312 + DDA3937_RS01585 0.87 +0.1
350,312 + DDA3937_RS01585 0.87 +3.2
350,313 - DDA3937_RS01585 0.87 -1.3
350,313 - DDA3937_RS01585 0.87 -0.6
350,313 - DDA3937_RS01585 0.87 +3.4
350,313 - DDA3937_RS01585 0.87 -2.7
350,416 + -2.8
350,416 + -1.7
350,437 + -1.1
350,437 + +2.6
350,437 + -0.3
350,437 + -2.4
350,437 + -0.9
350,437 + -0.9
350,437 + -0.5
350,442 + +2.5
350,454 + -0.2
350,454 + -0.9
350,470 + +0.2
350,470 + -0.7
350,501 + -2.9
350,501 + -0.8
350,649 + DDA3937_RS01590 0.65 -0.1
350,649 + DDA3937_RS01590 0.65 -1.2
350,649 + DDA3937_RS01590 0.65 -2.8
350,649 + DDA3937_RS01590 0.65 +0.1
350,649 + DDA3937_RS01590 0.65 +0.3
350,649 + DDA3937_RS01590 0.65 +0.9
350,649 + DDA3937_RS01590 0.65 -0.4
350,691 + DDA3937_RS01590 0.81 -2.3
350,691 + DDA3937_RS01590 0.81 -2.0
350,691 + DDA3937_RS01590 0.81 -1.3
350,691 + DDA3937_RS01590 0.81 -0.9
350,691 + DDA3937_RS01590 0.81 -0.9
350,693 + DDA3937_RS01590 0.82 +0.3
350,693 + DDA3937_RS01590 0.82 -0.7
350,693 + DDA3937_RS01590 0.82 -0.9
350,765 + +0.3

Or see this region's nucleotide sequence