Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01520 and DDA3937_RS01525 are separated by 93 nucleotides DDA3937_RS01525 and DDA3937_RS01530 are separated by 24 nucleotides DDA3937_RS01530 and DDA3937_RS01535 are separated by 47 nucleotides DDA3937_RS01535 and DDA3937_RS01540 are separated by 15 nucleotides
DDA3937_RS01520: DDA3937_RS01520 - PTS IIA-like nitrogen regulatory protein PtsN, at 340,047 to 340,535
_RS01520
DDA3937_RS01525: DDA3937_RS01525 - ribosome hibernation promoting factor, at 340,629 to 340,916
_RS01525
DDA3937_RS01530: DDA3937_RS01530 - RNA polymerase factor sigma-54, at 340,941 to 342,374
_RS01530
DDA3937_RS01535: DDA3937_RS01535 - LPS export ABC transporter ATP-binding protein, at 342,422 to 343,147
_RS01535
DDA3937_RS01540: DDA3937_RS01540 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 343,163 to 343,741
_RS01540
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.948 kb on + strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.952 kb on + strand at 339.953 kb on - strand at 339.953 kb on - strand at 340.088 kb on - strand at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.299 kb on - strand, within DDA3937_RS01520 at 340.508 kb on + strand at 340.509 kb on - strand at 340.509 kb on - strand at 340.538 kb on + strand at 340.538 kb on + strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.549 kb on - strand at 340.565 kb on + strand at 340.565 kb on + strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.646 kb on + strand at 340.646 kb on + strand at 340.652 kb on + strand at 340.652 kb on + strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.663 kb on - strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.828 kb on + strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.851 kb on + strand, within DDA3937_RS01525 at 340.857 kb on + strand, within DDA3937_RS01525 at 340.907 kb on + strand at 340.908 kb on - strand at 340.908 kb on - strand at 340.916 kb on + strand at 340.917 kb on - strand at 340.935 kb on + strand at 340.936 kb on - strand at 340.936 kb on - strand at 340.976 kb on + strand at 340.976 kb on + strand at 340.980 kb on + strand at 340.993 kb on + strand at 341.174 kb on - strand, within DDA3937_RS01530 at 341.223 kb on + strand, within DDA3937_RS01530 at 341.361 kb on - strand, within DDA3937_RS01530 at 341.467 kb on + strand, within DDA3937_RS01530 at 341.504 kb on + strand, within DDA3937_RS01530 at 341.507 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.564 kb on - strand at 341.652 kb on - strand, within DDA3937_RS01530 at 341.829 kb on + strand, within DDA3937_RS01530 at 341.830 kb on - strand, within DDA3937_RS01530 at 342.007 kb on + strand at 342.007 kb on + strand, within DDA3937_RS01530 at 342.040 kb on + strand, within DDA3937_RS01530 at 342.040 kb on + strand, within DDA3937_RS01530 at 342.143 kb on + strand, within DDA3937_RS01530 at 342.143 kb on + strand, within DDA3937_RS01530 at 342.144 kb on - strand, within DDA3937_RS01530 at 342.318 kb on + strand at 342.319 kb on - strand at 342.374 kb on + strand at 342.409 kb on + strand at 342.409 kb on + strand at 342.409 kb on + strand at 342.410 kb on - strand at 342.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 339,948 + -0.2 339,948 + +0.9 339,948 + -0.6 339,952 + +0.5 339,953 - +0.9 339,953 - +1.4 340,088 - -1.3 340,169 + DDA3937_RS01520 0.25 +0.9 340,169 + DDA3937_RS01520 0.25 -2.0 340,169 + DDA3937_RS01520 0.25 -0.1 340,169 + DDA3937_RS01520 0.25 +0.6 340,169 + DDA3937_RS01520 0.25 -0.4 340,169 + DDA3937_RS01520 0.25 +0.0 340,169 + DDA3937_RS01520 0.25 +0.6 340,169 + DDA3937_RS01520 0.25 -1.4 340,169 + DDA3937_RS01520 0.25 -2.8 340,170 - DDA3937_RS01520 0.25 -2.0 340,170 - DDA3937_RS01520 0.25 -0.3 340,170 - DDA3937_RS01520 0.25 -0.1 340,170 - DDA3937_RS01520 0.25 +0.3 340,170 - DDA3937_RS01520 0.25 +0.8 340,170 - DDA3937_RS01520 0.25 -1.6 340,170 - DDA3937_RS01520 0.25 -0.2 340,173 + DDA3937_RS01520 0.26 -1.3 340,173 + DDA3937_RS01520 0.26 +1.9 340,173 + DDA3937_RS01520 0.26 +0.5 340,174 - DDA3937_RS01520 0.26 +1.6 340,174 - DDA3937_RS01520 0.26 -0.9 340,174 - DDA3937_RS01520 0.26 +0.9 340,184 + DDA3937_RS01520 0.28 -1.2 340,184 + DDA3937_RS01520 0.28 -1.8 340,185 - DDA3937_RS01520 0.28 -0.4 340,185 - DDA3937_RS01520 0.28 -0.3 340,185 - DDA3937_RS01520 0.28 +1.9 340,298 + DDA3937_RS01520 0.51 -0.3 340,298 + DDA3937_RS01520 0.51 +1.3 340,299 - DDA3937_RS01520 0.52 +1.5 340,508 + -1.7 340,509 - -1.4 340,509 - -1.8 340,538 + -2.2 340,538 + +0.1 340,539 - -1.5 340,539 - -0.1 340,539 - +0.3 340,549 - -1.8 340,565 + +0.9 340,565 + +0.2 340,566 - +0.5 340,566 - +0.2 340,566 - -0.4 340,566 - -1.9 340,646 + -1.8 340,646 + +2.3 340,652 + -1.6 340,652 + +1.9 340,653 - -1.1 340,653 - +1.8 340,653 - +2.0 340,663 - DDA3937_RS01525 0.12 +0.0 340,705 + DDA3937_RS01525 0.26 -0.2 340,705 + DDA3937_RS01525 0.26 +0.6 340,705 + DDA3937_RS01525 0.26 +0.8 340,705 + DDA3937_RS01525 0.26 +0.1 340,705 + DDA3937_RS01525 0.26 -2.3 340,705 + DDA3937_RS01525 0.26 -0.5 340,705 + DDA3937_RS01525 0.26 +0.9 340,705 + DDA3937_RS01525 0.26 +1.0 340,705 + DDA3937_RS01525 0.26 -0.3 340,706 - DDA3937_RS01525 0.27 -0.7 340,706 - DDA3937_RS01525 0.27 -1.1 340,706 - DDA3937_RS01525 0.27 -0.9 340,706 - DDA3937_RS01525 0.27 -0.8 340,706 - DDA3937_RS01525 0.27 -1.9 340,706 - DDA3937_RS01525 0.27 -0.9 340,706 - DDA3937_RS01525 0.27 +1.7 340,706 - DDA3937_RS01525 0.27 -0.8 340,709 + DDA3937_RS01525 0.28 -1.6 340,709 + DDA3937_RS01525 0.28 +0.1 340,709 + +0.3 340,709 + DDA3937_RS01525 0.28 -2.3 340,709 + DDA3937_RS01525 0.28 +0.3 340,709 + DDA3937_RS01525 0.28 -0.1 340,710 - DDA3937_RS01525 0.28 +0.1 340,710 - DDA3937_RS01525 0.28 -0.9 340,710 - DDA3937_RS01525 0.28 -1.4 340,710 - DDA3937_RS01525 0.28 -1.7 340,710 - DDA3937_RS01525 0.28 -0.1 340,804 + DDA3937_RS01525 0.61 -0.8 340,804 + DDA3937_RS01525 0.61 -0.1 340,804 + DDA3937_RS01525 0.61 +1.8 340,804 + DDA3937_RS01525 0.61 -2.1 340,805 - DDA3937_RS01525 0.61 -1.4 340,805 - DDA3937_RS01525 0.61 +0.6 340,805 - DDA3937_RS01525 0.61 +0.6 340,805 - DDA3937_RS01525 0.61 +0.0 340,805 - DDA3937_RS01525 0.61 +0.3 340,805 - DDA3937_RS01525 0.61 +0.3 340,828 + DDA3937_RS01525 0.69 -0.1 340,829 - DDA3937_RS01525 0.69 -0.3 340,829 - DDA3937_RS01525 0.69 -1.6 340,829 - DDA3937_RS01525 0.69 +0.3 340,829 - DDA3937_RS01525 0.69 -1.6 340,851 + DDA3937_RS01525 0.77 -1.7 340,857 + DDA3937_RS01525 0.79 -2.5 340,907 + +0.1 340,908 - -1.8 340,908 - -0.4 340,916 + -1.2 340,917 - +0.6 340,935 + -0.5 340,936 - -1.8 340,936 - -1.1 340,976 + -0.4 340,976 + -1.1 340,980 + -0.9 340,993 + -1.3 341,174 - DDA3937_RS01530 0.16 -3.2 341,223 + DDA3937_RS01530 0.20 -0.1 341,361 - DDA3937_RS01530 0.29 -1.7 341,467 + DDA3937_RS01530 0.37 -1.1 341,504 + DDA3937_RS01530 0.39 -1.4 341,507 + DDA3937_RS01530 0.39 -0.7 341,563 + DDA3937_RS01530 0.43 -0.7 341,563 + DDA3937_RS01530 0.43 -0.1 341,564 - -0.1 341,652 - DDA3937_RS01530 0.50 -0.4 341,829 + DDA3937_RS01530 0.62 -1.1 341,830 - DDA3937_RS01530 0.62 -2.3 342,007 + +1.3 342,007 + DDA3937_RS01530 0.74 -1.9 342,040 + DDA3937_RS01530 0.77 -1.3 342,040 + DDA3937_RS01530 0.77 -2.0 342,143 + DDA3937_RS01530 0.84 -1.9 342,143 + DDA3937_RS01530 0.84 -0.9 342,144 - DDA3937_RS01530 0.84 -0.9 342,318 + -2.8 342,319 - -0.7 342,374 + -0.4 342,409 + +0.0 342,409 + -0.6 342,409 + +1.3 342,410 - -3.1 342,420 + -0.8
Or see this region's nucleotide sequence