Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00950

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS00940 and DDA3937_RS00945 are separated by 116 nucleotidesDDA3937_RS00945 and DDA3937_RS00950 are separated by 188 nucleotidesDDA3937_RS00950 and DDA3937_RS00955 are separated by 2 nucleotides DDA3937_RS00940: DDA3937_RS00940 - 50S ribosomal protein L31, at 216,863 to 217,078 _RS00940 DDA3937_RS00945: DDA3937_RS00945 - met regulon transcriptional regulator MetJ, at 217,195 to 217,512 _RS00945 DDA3937_RS00950: DDA3937_RS00950 - cystathionine gamma-synthase, at 217,701 to 218,861 _RS00950 DDA3937_RS00955: DDA3937_RS00955 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 218,864 to 221,299 _RS00955 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 217.200 kb on - strandat 217.236 kb on + strand, within DDA3937_RS00945at 217.237 kb on - strand, within DDA3937_RS00945at 217.237 kb on - strand, within DDA3937_RS00945at 217.237 kb on - strand, within DDA3937_RS00945at 217.237 kb on - strand, within DDA3937_RS00945at 217.237 kb on - strand, within DDA3937_RS00945at 217.567 kb on - strandat 217.579 kb on + strandat 217.580 kb on - strandat 217.580 kb on - strandat 217.583 kb on - strandat 217.584 kb on + strandat 217.585 kb on - strandat 217.585 kb on - strandat 217.670 kb on + strandat 217.670 kb on + strandat 217.670 kb on + strandat 217.671 kb on - strandat 217.719 kb on - strandat 217.721 kb on + strandat 217.722 kb on - strandat 217.722 kb on - strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.797 kb on + strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.798 kb on - strandat 217.800 kb on - strandat 217.800 kb on - strandat 217.814 kb on + strandat 217.815 kb on - strandat 217.836 kb on + strand, within DDA3937_RS00950at 217.836 kb on + strand, within DDA3937_RS00950at 217.837 kb on - strand, within DDA3937_RS00950at 217.928 kb on + strand, within DDA3937_RS00950at 217.928 kb on + strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.952 kb on + strand, within DDA3937_RS00950at 218.001 kb on + strand, within DDA3937_RS00950at 218.013 kb on + strand, within DDA3937_RS00950at 218.014 kb on - strand, within DDA3937_RS00950at 218.049 kb on + strand, within DDA3937_RS00950at 218.231 kb on + strandat 218.231 kb on + strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.385 kb on - strand, within DDA3937_RS00950at 218.415 kb on + strand, within DDA3937_RS00950at 218.415 kb on + strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.453 kb on + strand, within DDA3937_RS00950at 218.454 kb on - strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.859 kb on + strandat 218.860 kb on - strandat 218.860 kb on - strandat 218.874 kb on + strandat 218.874 kb on + strandat 218.968 kb on + strandat 218.978 kb on + strandat 219.088 kb on - strandat 219.160 kb on + strand, within DDA3937_RS00955at 219.161 kb on - strand, within DDA3937_RS00955at 219.231 kb on - strand, within DDA3937_RS00955at 219.231 kb on - strand, within DDA3937_RS00955at 219.329 kb on - strand, within DDA3937_RS00955at 219.437 kb on - strand, within DDA3937_RS00955at 219.445 kb on + strand, within DDA3937_RS00955at 219.445 kb on + strand, within DDA3937_RS00955at 219.446 kb on - strand, within DDA3937_RS00955at 219.500 kb on + strand, within DDA3937_RS00955at 219.500 kb on + strand, within DDA3937_RS00955at 219.547 kb on + strand, within DDA3937_RS00955at 219.547 kb on + strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.732 kb on - strand, within DDA3937_RS00955at 219.732 kb on - strand, within DDA3937_RS00955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
217,200 - -0.6
217,236 + DDA3937_RS00945 0.13 -2.5
217,237 - DDA3937_RS00945 0.13 +0.7
217,237 - DDA3937_RS00945 0.13 -0.2
217,237 - DDA3937_RS00945 0.13 -1.8
217,237 - DDA3937_RS00945 0.13 -1.9
217,237 - DDA3937_RS00945 0.13 +1.1
217,567 - +0.9
217,579 + +1.3
217,580 - -0.9
217,580 - -2.5
217,583 - -2.3
217,584 + -1.5
217,585 - -0.8
217,585 - +0.1
217,670 + -2.6
217,670 + -0.5
217,670 + -0.0
217,671 - -2.7
217,719 - -0.1
217,721 + -2.4
217,722 - +1.9
217,722 - -3.5
217,797 + -1.4
217,797 + -1.2
217,797 + -2.2
217,797 + -0.9
217,797 + -1.4
217,797 + -2.1
217,797 + +4.1
217,797 + -1.6
217,798 - -1.5
217,798 - -1.5
217,798 - +0.7
217,798 - -1.4
217,798 - -2.1
217,798 - -2.7
217,798 - -0.2
217,798 - -1.4
217,800 - -2.1
217,800 - -2.2
217,814 + -1.9
217,815 - -0.6
217,836 + DDA3937_RS00950 0.12 -2.8
217,836 + DDA3937_RS00950 0.12 -1.7
217,837 - DDA3937_RS00950 0.12 -0.4
217,928 + DDA3937_RS00950 0.20 -2.6
217,928 + DDA3937_RS00950 0.20 -0.3
217,929 - DDA3937_RS00950 0.20 -1.4
217,929 - DDA3937_RS00950 0.20 +0.9
217,929 - DDA3937_RS00950 0.20 -3.4
217,952 + DDA3937_RS00950 0.22 -2.9
218,001 + DDA3937_RS00950 0.26 -0.1
218,013 + DDA3937_RS00950 0.27 -0.9
218,014 - DDA3937_RS00950 0.27 -1.1
218,049 + DDA3937_RS00950 0.30 +0.9
218,231 + -0.4
218,231 + DDA3937_RS00950 0.46 -3.4
218,296 - DDA3937_RS00950 0.51 -2.3
218,296 - DDA3937_RS00950 0.51 -1.3
218,296 - DDA3937_RS00950 0.51 -1.7
218,384 + DDA3937_RS00950 0.59 +0.9
218,384 + DDA3937_RS00950 0.59 -1.7
218,384 + DDA3937_RS00950 0.59 -0.4
218,385 - DDA3937_RS00950 0.59 -2.9
218,415 + DDA3937_RS00950 0.61 -0.4
218,415 + DDA3937_RS00950 0.61 -1.9
218,416 - DDA3937_RS00950 0.62 -3.0
218,416 - DDA3937_RS00950 0.62 -2.5
218,416 - DDA3937_RS00950 0.62 -1.1
218,416 - DDA3937_RS00950 0.62 -0.5
218,416 - DDA3937_RS00950 0.62 -1.8
218,453 + DDA3937_RS00950 0.65 -1.9
218,454 - DDA3937_RS00950 0.65 -2.7
218,493 + DDA3937_RS00950 0.68 -3.0
218,493 + DDA3937_RS00950 0.68 -2.1
218,493 + DDA3937_RS00950 0.68 -1.5
218,526 + DDA3937_RS00950 0.71 +1.1
218,526 + DDA3937_RS00950 0.71 -3.4
218,526 + DDA3937_RS00950 0.71 -1.9
218,526 + DDA3937_RS00950 0.71 -2.8
218,526 + DDA3937_RS00950 0.71 -0.4
218,526 + DDA3937_RS00950 0.71 -1.9
218,526 + DDA3937_RS00950 0.71 -0.7
218,526 + DDA3937_RS00950 0.71 -0.6
218,527 - DDA3937_RS00950 0.71 -1.4
218,527 - DDA3937_RS00950 0.71 -2.4
218,527 - DDA3937_RS00950 0.71 -1.3
218,527 - DDA3937_RS00950 0.71 -3.2
218,527 - DDA3937_RS00950 0.71 -1.1
218,527 - DDA3937_RS00950 0.71 -1.4
218,527 - DDA3937_RS00950 0.71 -1.1
218,527 - DDA3937_RS00950 0.71 +0.3
218,527 - DDA3937_RS00950 0.71 -0.1
218,527 - DDA3937_RS00950 0.71 -1.3
218,527 - DDA3937_RS00950 0.71 -1.5
218,859 + -2.4
218,860 - +1.1
218,860 - +0.3
218,874 + -1.3
218,874 + -0.9
218,968 + +0.8
218,978 + -0.3
219,088 - -0.2
219,160 + DDA3937_RS00955 0.12 -1.3
219,161 - DDA3937_RS00955 0.12 -0.8
219,231 - DDA3937_RS00955 0.15 -0.7
219,231 - DDA3937_RS00955 0.15 -1.3
219,329 - DDA3937_RS00955 0.19 +1.9
219,437 - DDA3937_RS00955 0.24 +0.0
219,445 + DDA3937_RS00955 0.24 -1.2
219,445 + DDA3937_RS00955 0.24 -0.9
219,446 - DDA3937_RS00955 0.24 -0.6
219,500 + DDA3937_RS00955 0.26 +1.2
219,500 + DDA3937_RS00955 0.26 -0.8
219,547 + DDA3937_RS00955 0.28 -1.3
219,547 + DDA3937_RS00955 0.28 -0.2
219,548 - DDA3937_RS00955 0.28 +0.8
219,548 - DDA3937_RS00955 0.28 -0.3
219,548 - DDA3937_RS00955 0.28 +1.2
219,731 + DDA3937_RS00955 0.36 -0.9
219,731 + DDA3937_RS00955 0.36 +0.2
219,731 + DDA3937_RS00955 0.36 -0.3
219,732 - DDA3937_RS00955 0.36 +0.3
219,732 - DDA3937_RS00955 0.36 -0.7

Or see this region's nucleotide sequence