Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00775 and DDA3937_RS00780 are separated by 16 nucleotides DDA3937_RS00780 and DDA3937_RS00785 are separated by 210 nucleotides DDA3937_RS00785 and DDA3937_RS00790 are separated by 210 nucleotides
DDA3937_RS00775: DDA3937_RS00775 - envelope stress sensor histidine kinase CpxA, at 182,150 to 183,523
_RS00775
DDA3937_RS00780: DDA3937_RS00780 - envelope stress response regulator transcription factor CpxR, at 183,540 to 184,238
_RS00780
DDA3937_RS00785: DDA3937_RS00785 - cell-envelope stress modulator CpxP, at 184,449 to 185,009
_RS00785
DDA3937_RS00790: DDA3937_RS00790 - hypothetical protein, at 185,220 to 185,708
_RS00790
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.523 kb on + strand at 183.524 kb on - strand at 183.638 kb on + strand, within DDA3937_RS00780 at 184.008 kb on - strand, within DDA3937_RS00780 at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.265 kb on - strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.295 kb on + strand at 184.299 kb on + strand at 184.339 kb on + strand at 184.340 kb on - strand at 184.344 kb on + strand at 184.399 kb on + strand at 184.399 kb on + strand at 184.400 kb on - strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.420 kb on + strand at 184.420 kb on + strand at 184.421 kb on - strand at 184.421 kb on - strand at 184.425 kb on + strand at 184.425 kb on + strand at 184.425 kb on + strand at 184.631 kb on + strand, within DDA3937_RS00785 at 184.717 kb on - strand, within DDA3937_RS00785 at 184.860 kb on + strand, within DDA3937_RS00785 at 184.861 kb on - strand, within DDA3937_RS00785 at 185.001 kb on - strand at 185.001 kb on - strand at 185.007 kb on + strand at 185.008 kb on - strand at 185.013 kb on + strand at 185.013 kb on + strand at 185.013 kb on + strand at 185.014 kb on - strand at 185.023 kb on + strand at 185.024 kb on - strand at 185.051 kb on + strand at 185.051 kb on + strand at 185.052 kb on - strand at 185.063 kb on + strand at 185.064 kb on - strand at 185.064 kb on - strand at 185.064 kb on - strand at 185.070 kb on + strand at 185.098 kb on - strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.156 kb on + strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.187 kb on - strand at 185.222 kb on - strand at 185.334 kb on - strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.432 kb on - strand, within DDA3937_RS00790 at 185.465 kb on - strand, within DDA3937_RS00790 at 185.557 kb on + strand, within DDA3937_RS00790 at 185.564 kb on + strand, within DDA3937_RS00790 at 185.665 kb on - strand at 185.753 kb on + strand at 185.756 kb on + strand at 185.756 kb on + strand at 185.757 kb on - strand at 185.862 kb on + strand at 185.863 kb on - strand at 185.863 kb on - strand at 185.866 kb on + strand at 185.895 kb on + strand at 185.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 183,523 + -0.5 183,524 - -0.0 183,638 + DDA3937_RS00780 0.14 +0.2 184,008 - DDA3937_RS00780 0.67 +1.3 184,248 - +0.0 184,248 - -1.5 184,248 - -0.9 184,248 - -0.7 184,265 - -1.8 184,271 + +3.1 184,271 + +3.0 184,271 + -2.2 184,272 - +0.9 184,272 - -1.8 184,272 - +0.9 184,272 - -0.3 184,272 - -1.8 184,272 - -1.4 184,272 - -0.1 184,272 - -0.7 184,295 + -1.6 184,299 + -1.4 184,339 + +0.6 184,340 - +1.2 184,344 + +1.9 184,399 + -2.1 184,399 + -1.4 184,400 - -0.4 184,412 + -0.3 184,412 + -0.7 184,412 + +0.3 184,412 + -0.7 184,420 + -1.5 184,420 + -1.1 184,421 - -0.9 184,421 - +0.6 184,425 + -0.5 184,425 + -1.8 184,425 + -0.2 184,631 + DDA3937_RS00785 0.32 -1.1 184,717 - DDA3937_RS00785 0.48 -1.4 184,860 + DDA3937_RS00785 0.73 -0.9 184,861 - DDA3937_RS00785 0.73 +0.9 185,001 - -0.7 185,001 - -0.4 185,007 + +0.9 185,008 - +1.9 185,013 + -0.1 185,013 + +0.3 185,013 + +2.9 185,014 - -0.5 185,023 + -1.2 185,024 - +1.5 185,051 + +0.5 185,051 + -0.4 185,052 - +0.1 185,063 + -0.3 185,064 - -0.2 185,064 - -0.7 185,064 - -1.2 185,070 + +0.6 185,098 - +1.5 185,154 + -1.9 185,154 + -0.9 185,154 + +1.5 185,155 - +0.7 185,155 - -0.7 185,155 - -1.5 185,156 + -1.1 185,157 - +0.9 185,157 - +0.5 185,157 - -1.2 185,157 - +0.6 185,157 - -0.9 185,187 - -1.2 185,222 - -0.9 185,334 - DDA3937_RS00790 0.23 -1.7 185,417 + DDA3937_RS00790 0.40 -1.2 185,417 + DDA3937_RS00790 0.40 +0.3 185,417 + DDA3937_RS00790 0.40 -2.0 185,418 - DDA3937_RS00790 0.40 -0.4 185,418 - DDA3937_RS00790 0.40 -2.6 185,419 + DDA3937_RS00790 0.41 -3.0 185,419 + DDA3937_RS00790 0.41 -0.2 185,420 - DDA3937_RS00790 0.41 -1.8 185,420 - DDA3937_RS00790 0.41 -1.2 185,420 - DDA3937_RS00790 0.41 +1.8 185,431 + DDA3937_RS00790 0.43 -0.5 185,431 + DDA3937_RS00790 0.43 +0.9 185,432 - DDA3937_RS00790 0.43 -1.8 185,465 - DDA3937_RS00790 0.50 -1.4 185,557 + DDA3937_RS00790 0.69 -2.0 185,564 + DDA3937_RS00790 0.70 -2.0 185,665 - -0.9 185,753 + -0.1 185,756 + -0.9 185,756 + +0.9 185,757 - -0.7 185,862 + +1.6 185,863 - -1.2 185,863 - +0.9 185,866 + +1.8 185,895 + +0.9 185,993 - -1.2
Or see this region's nucleotide sequence