Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21345

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,861,229	+		DDA3937_RS21335	0.68	-0.3
4,861,238	+		DDA3937_RS21335	0.69	+1.2
4,861,239	-		DDA3937_RS21335	0.69	-0.3
4,861,292	+		DDA3937_RS21335	0.74	+0.9
4,861,296	+		DDA3937_RS21335	0.75	+0.1
4,861,296	+				+0.7
4,861,296	+		DDA3937_RS21335	0.75	-0.8
4,861,296	+		DDA3937_RS21335	0.75	+1.0
4,861,296	+		DDA3937_RS21335	0.75	+1.9
4,861,296	+		DDA3937_RS21335	0.75	-1.4
4,861,296	+		DDA3937_RS21335	0.75	+0.7
4,861,296	+		DDA3937_RS21335	0.75	-1.0
4,861,297	-		DDA3937_RS21335	0.75	-1.2
4,861,297	-		DDA3937_RS21335	0.75	+0.7
4,861,297	-		DDA3937_RS21335	0.75	+0.3
4,861,297	-		DDA3937_RS21335	0.75	-1.9
4,861,299	+		DDA3937_RS21335	0.75	-0.8
4,861,299	+		DDA3937_RS21335	0.75	+1.5
4,861,299	+		DDA3937_RS21335	0.75	-2.2
4,861,299	+		DDA3937_RS21335	0.75	+0.1
4,861,300	-		DDA3937_RS21335	0.75	-1.6
4,861,300	-		DDA3937_RS21335	0.75	-1.3
4,861,569	+				-0.2
4,861,569	+				-0.2
4,861,576	+				-0.6
4,861,576	+				+2.3
4,861,577	-				-0.1
4,861,582	+				+1.0
4,861,583	-				+0.3
4,861,591	+				-1.3
4,861,591	+				+0.9
4,861,592	-				-1.6
4,861,677	+				+0.3
4,861,677	+				+1.3
4,861,677	+				-1.2
4,861,678	-				+0.1
4,861,678	-				+1.3
4,861,678	-				-1.1
4,861,678	-				-0.1
4,861,715	+				-2.7
4,861,716	-				+0.9
4,861,716	-				+2.6
4,861,716	-				+0.3
4,861,716	-				-2.6
4,861,716	-				-0.9
4,861,716	-				+0.2
4,861,818	-		DDA3937_RS21340	0.32	-0.2
4,861,844	+		DDA3937_RS21340	0.39	-0.8
4,861,844	+		DDA3937_RS21340	0.39	-0.7
4,861,844	+		DDA3937_RS21340	0.39	+0.7
4,861,914	+		DDA3937_RS21340	0.57	-0.5
4,861,942	-		DDA3937_RS21340	0.65	-0.4
4,862,114	+				-1.9
4,862,115	-				-0.2
4,862,158	-				-0.6
4,862,206	+				-0.4
4,862,227	+				-0.3
4,862,227	+				-0.3
4,862,227	+				-2.1
4,862,228	-				-0.1
4,862,228	-				-0.9
4,862,228	-				-1.4
4,862,228	-				-0.4
4,862,228	-				-1.1
4,862,236	+				+1.1
4,862,237	-				-0.0
4,862,271	+				+0.4
4,862,370	+		DDA3937_RS21345	0.25	+0.7
4,862,370	+		DDA3937_RS21345	0.25	-0.0
4,862,370	+		DDA3937_RS21345	0.25	+1.4
4,862,370	+		DDA3937_RS21345	0.25	-1.5
4,862,370	+		DDA3937_RS21345	0.25	+1.1
4,862,370	+		DDA3937_RS21345	0.25	-0.6
4,862,371	-		DDA3937_RS21345	0.25	-1.8
4,862,371	-		DDA3937_RS21345	0.25	+0.4
4,862,371	-		DDA3937_RS21345	0.25	-1.3
4,862,371	-		DDA3937_RS21345	0.25	+0.0
4,862,371	-		DDA3937_RS21345	0.25	-1.5
4,862,371	-		DDA3937_RS21345	0.25	-1.1
4,862,379	+		DDA3937_RS21345	0.26	-0.4
4,862,379	+		DDA3937_RS21345	0.26	-0.5
4,862,379	+		DDA3937_RS21345	0.26	+0.0
4,862,380	-		DDA3937_RS21345	0.26	+1.7
4,862,380	-				+0.7
4,862,576	+		DDA3937_RS21345	0.58	+0.2
4,862,576	+		DDA3937_RS21345	0.58	-1.2
4,862,576	+		DDA3937_RS21345	0.58	+0.1
4,862,577	-		DDA3937_RS21345	0.58	+0.5
4,862,577	-		DDA3937_RS21345	0.58	-1.6
4,862,577	-		DDA3937_RS21345	0.58	+0.7
4,862,936	-				-0.3
4,862,945	+				-1.3
4,862,946	-				-0.4
4,863,029	+		DDA3937_RS21350	0.18	-1.4
4,863,111	+		DDA3937_RS21350	0.35	+0.4
4,863,112	-		DDA3937_RS21350	0.35	-1.3
4,863,113	+		DDA3937_RS21350	0.35	-2.1
4,863,114	-		DDA3937_RS21350	0.35	-2.1
4,863,114	-		DDA3937_RS21350	0.35	-1.6
4,863,114	-		DDA3937_RS21350	0.35	-0.4
4,863,164	+		DDA3937_RS21350	0.46	+0.8
4,863,164	+		DDA3937_RS21350	0.46	-2.2
4,863,165	-		DDA3937_RS21350	0.46	-1.3
4,863,179	+				+2.4
4,863,180	-		DDA3937_RS21350	0.49	-0.2
4,863,180	-		DDA3937_RS21350	0.49	+1.5
4,863,205	-		DDA3937_RS21350	0.54	-0.7
4,863,209	+		DDA3937_RS21350	0.55	-0.7
4,863,209	+		DDA3937_RS21350	0.55	+1.7
4,863,210	-		DDA3937_RS21350	0.55	+0.3
4,863,210	-		DDA3937_RS21350	0.55	-0.9
4,863,279	+		DDA3937_RS21350	0.70	-1.1
4,863,279	+		DDA3937_RS21350	0.70	+1.0
4,863,279	+		DDA3937_RS21350	0.70	-0.6
4,863,279	+		DDA3937_RS21350	0.70	-2.3
4,863,279	+		DDA3937_RS21350	0.70	-0.1
4,863,279	+		DDA3937_RS21350	0.70	-0.9
4,863,280	-		DDA3937_RS21350	0.70	-0.5
4,863,280	-		DDA3937_RS21350	0.70	+0.5
4,863,280	-				+2.7
4,863,280	-		DDA3937_RS21350	0.70	-1.7
4,863,280	-		DDA3937_RS21350	0.70	+0.8
4,863,348	-		DDA3937_RS21350	0.84	-1.0
4,863,366	+		DDA3937_RS21350	0.88	-3.6
4,863,411	+				-2.1
4,863,411	+				-0.1
4,863,411	+				-0.1
4,863,411	+				-1.5
4,863,411	+				-1.3
4,863,411	+				-0.4
4,863,411	+				-0.3
4,863,411	+				+0.5
4,863,412	-				+0.7
4,863,412	-				+0.8
4,863,412	-				-0.4
4,863,415	+				-0.6
4,863,415	+				-2.1
4,863,415	+				-0.9
4,863,415	+				-0.8
4,863,415	+				-1.1
4,863,415	+				+0.1
4,863,415	+				+0.7
4,863,415	+				-0.6
4,863,415	+				-0.6
4,863,415	+				-0.4
4,863,415	+				+1.2
4,863,415	+				+0.6
4,863,415	+				-0.9
4,863,415	+				-0.2
4,863,415	+				-0.7
4,863,415	+				-0.6
4,863,415	+				-1.3
4,863,415	+				-2.4
4,863,415	+				+0.1
4,863,415	+				-2.4
4,863,415	+				+2.7
4,863,415	+				-0.9
4,863,415	+				+1.7
4,863,415	+				-0.9
4,863,415	+				+0.3
4,863,416	-				-0.1
4,863,416	-				-0.7
4,863,416	-				+0.1
4,863,416	-				+0.2
4,863,416	-				-0.6
4,863,416	-				-1.7
4,863,416	-				+0.9
4,863,416	-				-0.9
4,863,416	-				+1.1
4,863,416	-				+0.8
4,863,416	-				-0.2
4,863,416	-				+0.6
4,863,416	-				-0.1
4,863,416	-				-0.3
4,863,416	-				+1.3
4,863,416	-				+0.5
4,863,416	-				-0.6
4,863,416	-				-1.3
4,863,416	-				-2.2
4,863,416	-				-0.5
4,863,416	-				+0.1
4,863,416	-				-0.5
4,863,416	-				-1.8
4,863,416	-				-0.4
4,863,416	-				+0.7
4,863,416	-				-0.5
4,863,416	-				-0.3
4,863,416	-				-2.1
4,863,416	-				-2.5
4,863,416	-				+2.0
4,863,416	-				-1.3
4,863,416	-				-0.6
4,863,462	+				-0.7
4,863,463	-				-1.7
4,863,463	-				-1.1
4,863,463	-				-3.5
4,863,474	+				-1.0
4,863,474	+				-0.3
4,863,475	-				-1.1
4,863,476	+				-1.8
4,863,476	+				-0.2
4,863,476	+				-0.6
4,863,477	-				-1.5
4,863,494	-				-2.5
4,863,494	-				-0.4
4,863,497	-				-0.5
4,863,513	+				-1.1
4,863,514	-				-1.6
4,863,514	-				-1.9
4,863,516	+				+0.1
4,863,516	+				-1.0
4,863,517	-				-0.6
4,863,758	+		DDA3937_RS21355	0.27	+0.9