Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20315

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20305 and DDA3937_RS20310 are separated by 3 nucleotidesDDA3937_RS20310 and DDA3937_RS20315 are separated by 3 nucleotidesDDA3937_RS20315 and DDA3937_RS20320 are separated by 96 nucleotides DDA3937_RS20305: DDA3937_RS20305 - Sec-independent protein translocase subunit TatC, at 4,624,453 to 4,625,223 _RS20305 DDA3937_RS20310: DDA3937_RS20310 - Sec-independent protein translocase subunit TatB, at 4,625,227 to 4,625,802 _RS20310 DDA3937_RS20315: DDA3937_RS20315 - Sec-independent protein translocase subunit TatA, at 4,625,806 to 4,626,060 _RS20315 DDA3937_RS20320: DDA3937_RS20320 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,626,157 to 4,627,794 _RS20320 Position (kb) 4625 4626 4627Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4624.848 kb on - strand, within DDA3937_RS20305at 4624.958 kb on + strand, within DDA3937_RS20305at 4624.958 kb on + strand, within DDA3937_RS20305at 4624.959 kb on - strand, within DDA3937_RS20305at 4624.997 kb on - strand, within DDA3937_RS20305at 4624.997 kb on - strand, within DDA3937_RS20305at 4625.001 kb on + strand, within DDA3937_RS20305at 4625.002 kb on - strand, within DDA3937_RS20305at 4625.099 kb on + strandat 4625.100 kb on - strand, within DDA3937_RS20305at 4625.100 kb on - strand, within DDA3937_RS20305at 4625.100 kb on - strand, within DDA3937_RS20305at 4625.100 kb on - strand, within DDA3937_RS20305at 4625.100 kb on - strand, within DDA3937_RS20305at 4625.224 kb on - strandat 4625.224 kb on - strandat 4625.224 kb on - strandat 4625.224 kb on - strandat 4625.785 kb on - strandat 4625.808 kb on - strandat 4625.820 kb on + strandat 4625.821 kb on - strandat 4625.821 kb on - strandat 4625.821 kb on - strandat 4625.821 kb on - strandat 4625.953 kb on - strand, within DDA3937_RS20315at 4625.953 kb on - strand, within DDA3937_RS20315at 4625.953 kb on - strand, within DDA3937_RS20315at 4626.011 kb on - strand, within DDA3937_RS20315at 4626.046 kb on - strandat 4626.048 kb on + strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.049 kb on - strandat 4626.069 kb on + strandat 4626.070 kb on - strandat 4626.070 kb on - strandat 4626.070 kb on - strandat 4626.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,624,848 - DDA3937_RS20305 0.51 -0.5
4,624,958 + DDA3937_RS20305 0.65 -0.4
4,624,958 + DDA3937_RS20305 0.65 +1.1
4,624,959 - DDA3937_RS20305 0.66 -0.9
4,624,997 - DDA3937_RS20305 0.71 -0.5
4,624,997 - DDA3937_RS20305 0.71 -0.3
4,625,001 + DDA3937_RS20305 0.71 +0.9
4,625,002 - DDA3937_RS20305 0.71 +2.7
4,625,099 + +2.6
4,625,100 - DDA3937_RS20305 0.84 +0.6
4,625,100 - DDA3937_RS20305 0.84 -1.2
4,625,100 - DDA3937_RS20305 0.84 +0.9
4,625,100 - DDA3937_RS20305 0.84 -0.5
4,625,100 - DDA3937_RS20305 0.84 +0.0
4,625,224 - -0.5
4,625,224 - +0.3
4,625,224 - +1.1
4,625,224 - +0.9
4,625,785 - -1.0
4,625,808 - +0.6
4,625,820 + +0.0
4,625,821 - -0.7
4,625,821 - +0.0
4,625,821 - -0.7
4,625,821 - -1.5
4,625,953 - DDA3937_RS20315 0.58 -0.6
4,625,953 - DDA3937_RS20315 0.58 -0.2
4,625,953 - DDA3937_RS20315 0.58 -1.1
4,626,011 - DDA3937_RS20315 0.80 -1.2
4,626,046 - -1.1
4,626,048 + -0.4
4,626,049 - -0.7
4,626,049 - +0.9
4,626,049 - +1.5
4,626,049 - -1.3
4,626,049 - +2.5
4,626,049 - +0.5
4,626,049 - -0.6
4,626,049 - -2.3
4,626,049 - -2.2
4,626,049 - -1.0
4,626,069 + -0.9
4,626,070 - -1.8
4,626,070 - -0.7
4,626,070 - -0.8
4,626,078 - +3.7

Or see this region's nucleotide sequence