Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20175 and DDA3937_RS20180 are separated by 344 nucleotides DDA3937_RS20180 and DDA3937_RS20185 are separated by 62 nucleotides DDA3937_RS20185 and DDA3937_RS20190 are separated by 119 nucleotides
DDA3937_RS20175: DDA3937_RS20175 - MFS transporter, at 4,598,288 to 4,599,502
_RS20175
DDA3937_RS20180: DDA3937_RS20180 - YifB family Mg chelatase-like AAA ATPase, at 4,599,847 to 4,601,373
_RS20180
DDA3937_RS20185: DDA3937_RS20185 - DUF413 domain-containing protein, at 4,601,436 to 4,601,774
_RS20185
DDA3937_RS20190: DDA3937_RS20190 - HTH-type transcriptional regulator HdfR, at 4,601,894 to 4,602,718
_RS20190
Position (kb) 4599
4600
4601
4602 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4598.849 kb on + strand, within DDA3937_RS20175 at 4598.850 kb on - strand, within DDA3937_RS20175 at 4598.859 kb on + strand, within DDA3937_RS20175 at 4598.961 kb on + strand at 4598.966 kb on - strand, within DDA3937_RS20175 at 4598.983 kb on + strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4599.001 kb on + strand, within DDA3937_RS20175 at 4599.002 kb on - strand, within DDA3937_RS20175 at 4599.042 kb on + strand, within DDA3937_RS20175 at 4599.048 kb on - strand, within DDA3937_RS20175 at 4599.064 kb on - strand, within DDA3937_RS20175 at 4599.091 kb on + strand, within DDA3937_RS20175 at 4599.180 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.212 kb on - strand, within DDA3937_RS20175 at 4599.352 kb on + strand, within DDA3937_RS20175 at 4599.353 kb on - strand, within DDA3937_RS20175 at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.510 kb on - strand at 4599.517 kb on + strand at 4599.517 kb on + strand at 4599.517 kb on + strand at 4599.518 kb on - strand at 4599.600 kb on - strand at 4599.600 kb on - strand at 4599.608 kb on + strand at 4599.609 kb on - strand at 4599.615 kb on + strand at 4599.616 kb on - strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.620 kb on - strand at 4599.694 kb on + strand at 4599.758 kb on + strand at 4599.865 kb on + strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.918 kb on + strand at 4599.919 kb on - strand at 4599.932 kb on + strand at 4599.932 kb on + strand at 4599.932 kb on + strand at 4599.933 kb on - strand at 4600.088 kb on - strand, within DDA3937_RS20180 at 4600.157 kb on - strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.306 kb on - strand, within DDA3937_RS20180 at 4600.380 kb on + strand, within DDA3937_RS20180 at 4600.380 kb on + strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.405 kb on - strand, within DDA3937_RS20180 at 4600.493 kb on + strand, within DDA3937_RS20180 at 4600.611 kb on + strand, within DDA3937_RS20180 at 4600.612 kb on - strand, within DDA3937_RS20180 at 4600.677 kb on + strand, within DDA3937_RS20180 at 4600.700 kb on + strand, within DDA3937_RS20180 at 4600.700 kb on + strand, within DDA3937_RS20180 at 4600.701 kb on - strand, within DDA3937_RS20180 at 4600.734 kb on + strand, within DDA3937_RS20180 at 4600.734 kb on + strand, within DDA3937_RS20180 at 4600.735 kb on - strand, within DDA3937_RS20180 at 4600.782 kb on - strand, within DDA3937_RS20180 at 4600.927 kb on - strand, within DDA3937_RS20180 at 4600.946 kb on + strand, within DDA3937_RS20180 at 4600.947 kb on - strand, within DDA3937_RS20180 at 4600.951 kb on + strand, within DDA3937_RS20180 at 4600.952 kb on - strand, within DDA3937_RS20180 at 4600.952 kb on - strand, within DDA3937_RS20180 at 4600.952 kb on - strand, within DDA3937_RS20180 at 4601.015 kb on + strand, within DDA3937_RS20180 at 4601.016 kb on - strand, within DDA3937_RS20180 at 4601.016 kb on - strand, within DDA3937_RS20180 at 4601.016 kb on - strand, within DDA3937_RS20180 at 4601.070 kb on - strand, within DDA3937_RS20180 at 4601.081 kb on + strand, within DDA3937_RS20180 at 4601.082 kb on - strand, within DDA3937_RS20180 at 4601.105 kb on + strand, within DDA3937_RS20180 at 4601.188 kb on + strand, within DDA3937_RS20180 at 4601.189 kb on - strand, within DDA3937_RS20180 at 4601.259 kb on + strand at 4601.259 kb on + strand at 4601.259 kb on + strand at 4601.260 kb on - strand at 4601.260 kb on - strand at 4601.298 kb on + strand at 4601.299 kb on - strand at 4601.299 kb on - strand at 4601.323 kb on + strand at 4601.323 kb on + strand at 4601.323 kb on + strand at 4601.323 kb on + strand at 4601.324 kb on - strand at 4601.324 kb on - strand at 4601.324 kb on - strand at 4601.331 kb on + strand at 4601.331 kb on + strand at 4601.331 kb on + strand at 4601.332 kb on - strand at 4601.332 kb on - strand at 4601.392 kb on + strand at 4601.393 kb on - strand at 4601.437 kb on + strand at 4601.438 kb on - strand at 4601.587 kb on - strand, within DDA3937_RS20185 at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.797 kb on - strand at 4601.826 kb on + strand at 4601.827 kb on - strand at 4601.831 kb on - strand at 4601.860 kb on + strand at 4601.969 kb on + strand at 4601.970 kb on - strand at 4601.970 kb on - strand at 4601.970 kb on - strand at 4601.973 kb on + strand at 4602.316 kb on - strand, within DDA3937_RS20190 at 4602.363 kb on + strand, within DDA3937_RS20190
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,598,849 + DDA3937_RS20175 0.46 -2.0 4,598,850 - DDA3937_RS20175 0.46 -0.9 4,598,859 + DDA3937_RS20175 0.47 -0.3 4,598,961 + +0.6 4,598,966 - DDA3937_RS20175 0.56 +0.4 4,598,983 + DDA3937_RS20175 0.57 +5.8 4,598,984 - DDA3937_RS20175 0.57 +0.2 4,598,984 - +2.0 4,598,984 - DDA3937_RS20175 0.57 -0.5 4,598,984 - DDA3937_RS20175 0.57 -0.5 4,598,984 - DDA3937_RS20175 0.57 +0.0 4,599,001 + DDA3937_RS20175 0.59 +0.9 4,599,002 - DDA3937_RS20175 0.59 +0.7 4,599,042 + DDA3937_RS20175 0.62 +0.3 4,599,048 - DDA3937_RS20175 0.63 -0.3 4,599,064 - DDA3937_RS20175 0.64 -0.5 4,599,091 + DDA3937_RS20175 0.66 -0.1 4,599,180 + DDA3937_RS20175 0.73 +0.1 4,599,208 + DDA3937_RS20175 0.76 -2.2 4,599,208 + DDA3937_RS20175 0.76 -0.2 4,599,208 + DDA3937_RS20175 0.76 +1.4 4,599,208 + DDA3937_RS20175 0.76 +3.1 4,599,209 - DDA3937_RS20175 0.76 +1.4 4,599,209 - DDA3937_RS20175 0.76 -1.8 4,599,209 - DDA3937_RS20175 0.76 -0.7 4,599,209 - DDA3937_RS20175 0.76 -1.0 4,599,212 - DDA3937_RS20175 0.76 -0.4 4,599,352 + DDA3937_RS20175 0.88 -0.2 4,599,353 - DDA3937_RS20175 0.88 +0.7 4,599,475 + +1.2 4,599,475 + -1.2 4,599,475 + +0.9 4,599,475 + -0.7 4,599,475 + -0.9 4,599,475 + +1.5 4,599,475 + +0.0 4,599,476 - -0.3 4,599,476 - +3.2 4,599,476 - -0.6 4,599,476 - -2.0 4,599,510 - +1.0 4,599,517 + -0.6 4,599,517 + +0.3 4,599,517 + -0.8 4,599,518 - +0.6 4,599,600 - -1.0 4,599,600 - -0.7 4,599,608 + +0.2 4,599,609 - +0.8 4,599,615 + +0.5 4,599,616 - +0.1 4,599,619 + -0.7 4,599,619 + -1.0 4,599,619 + +1.2 4,599,619 + -0.6 4,599,620 - +1.3 4,599,694 + +0.2 4,599,758 + -0.6 4,599,865 + -1.5 4,599,866 - -0.7 4,599,866 - -0.7 4,599,918 + -2.2 4,599,919 - -1.8 4,599,932 + -0.9 4,599,932 + -1.1 4,599,932 + -0.1 4,599,933 - -1.0 4,600,088 - DDA3937_RS20180 0.16 -0.1 4,600,157 - DDA3937_RS20180 0.20 -0.9 4,600,305 + DDA3937_RS20180 0.30 +0.3 4,600,305 + DDA3937_RS20180 0.30 +0.4 4,600,305 + DDA3937_RS20180 0.30 -1.2 4,600,306 - DDA3937_RS20180 0.30 -0.5 4,600,380 + DDA3937_RS20180 0.35 +0.8 4,600,380 + DDA3937_RS20180 0.35 +0.6 4,600,381 - DDA3937_RS20180 0.35 -0.9 4,600,381 - DDA3937_RS20180 0.35 -1.0 4,600,381 - DDA3937_RS20180 0.35 -0.3 4,600,381 - DDA3937_RS20180 0.35 +1.2 4,600,383 + DDA3937_RS20180 0.35 +1.3 4,600,383 + DDA3937_RS20180 0.35 -0.3 4,600,383 + DDA3937_RS20180 0.35 +1.2 4,600,383 + DDA3937_RS20180 0.35 +0.7 4,600,384 - DDA3937_RS20180 0.35 +3.1 4,600,384 - DDA3937_RS20180 0.35 +0.5 4,600,384 - DDA3937_RS20180 0.35 -0.4 4,600,384 - DDA3937_RS20180 0.35 -1.6 4,600,384 - DDA3937_RS20180 0.35 -1.6 4,600,384 - DDA3937_RS20180 0.35 -0.8 4,600,405 - DDA3937_RS20180 0.37 +0.7 4,600,493 + DDA3937_RS20180 0.42 +3.1 4,600,611 + DDA3937_RS20180 0.50 -0.8 4,600,612 - DDA3937_RS20180 0.50 +0.9 4,600,677 + DDA3937_RS20180 0.54 +1.0 4,600,700 + DDA3937_RS20180 0.56 -1.0 4,600,700 + DDA3937_RS20180 0.56 +0.1 4,600,701 - DDA3937_RS20180 0.56 -0.7 4,600,734 + DDA3937_RS20180 0.58 -2.0 4,600,734 + DDA3937_RS20180 0.58 +0.2 4,600,735 - DDA3937_RS20180 0.58 +0.4 4,600,782 - DDA3937_RS20180 0.61 +1.0 4,600,927 - DDA3937_RS20180 0.71 +0.2 4,600,946 + DDA3937_RS20180 0.72 +0.4 4,600,947 - DDA3937_RS20180 0.72 +0.4 4,600,951 + DDA3937_RS20180 0.72 -0.6 4,600,952 - DDA3937_RS20180 0.72 -0.2 4,600,952 - DDA3937_RS20180 0.72 -0.4 4,600,952 - DDA3937_RS20180 0.72 +0.6 4,601,015 + DDA3937_RS20180 0.76 +0.4 4,601,016 - DDA3937_RS20180 0.77 +0.1 4,601,016 - DDA3937_RS20180 0.77 +0.5 4,601,016 - DDA3937_RS20180 0.77 +0.2 4,601,070 - DDA3937_RS20180 0.80 -1.6 4,601,081 + DDA3937_RS20180 0.81 -0.1 4,601,082 - DDA3937_RS20180 0.81 -0.2 4,601,105 + DDA3937_RS20180 0.82 -0.6 4,601,188 + DDA3937_RS20180 0.88 -0.0 4,601,189 - DDA3937_RS20180 0.88 +0.9 4,601,259 + +0.3 4,601,259 + -0.6 4,601,259 + +1.0 4,601,260 - -1.8 4,601,260 - -0.4 4,601,298 + +1.0 4,601,299 - -0.2 4,601,299 - -0.9 4,601,323 + +0.4 4,601,323 + +1.2 4,601,323 + +0.3 4,601,323 + -0.6 4,601,324 - -0.5 4,601,324 - -2.4 4,601,324 - +0.1 4,601,331 + +0.6 4,601,331 + -1.2 4,601,331 + +1.0 4,601,332 - -1.1 4,601,332 - +0.0 4,601,392 + -1.6 4,601,393 - -1.0 4,601,437 + +1.0 4,601,438 - -0.7 4,601,587 - DDA3937_RS20185 0.45 +3.2 4,601,797 - -3.2 4,601,797 - -0.7 4,601,797 - -0.3 4,601,797 - -1.3 4,601,797 - -0.6 4,601,797 - -1.1 4,601,797 - -1.5 4,601,826 + +3.2 4,601,827 - -1.8 4,601,831 - +0.3 4,601,860 + +1.6 4,601,969 + -0.2 4,601,970 - +0.0 4,601,970 - -0.4 4,601,970 - +0.6 4,601,973 + +1.2 4,602,316 - DDA3937_RS20190 0.51 +0.6 4,602,363 + DDA3937_RS20190 0.57 -0.7
Or see this region's nucleotide sequence