Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16535

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,765,327	+		DDA3937_RS16530	0.22	-0.1
3,765,328	-		DDA3937_RS16530	0.22	-1.6
3,765,328	-		DDA3937_RS16530	0.22	-2.5
3,765,328	-		DDA3937_RS16530	0.22	-1.1
3,765,377	+		DDA3937_RS16530	0.26	-2.8
3,765,377	+		DDA3937_RS16530	0.26	-1.7
3,765,377	+		DDA3937_RS16530	0.26	-0.1
3,765,378	-		DDA3937_RS16530	0.26	-2.0
3,765,391	+		DDA3937_RS16530	0.27	-2.8
3,765,392	-		DDA3937_RS16530	0.27	-2.4
3,765,451	+		DDA3937_RS16530	0.32	-1.7
3,765,451	+		DDA3937_RS16530	0.32	-2.4
3,765,451	+		DDA3937_RS16530	0.32	+1.4
3,765,451	+		DDA3937_RS16530	0.32	-3.3
3,765,451	+		DDA3937_RS16530	0.32	-1.8
3,765,451	+		DDA3937_RS16530	0.32	-2.0
3,765,451	+		DDA3937_RS16530	0.32	-0.1
3,765,451	+		DDA3937_RS16530	0.32	-2.1
3,765,451	+		DDA3937_RS16530	0.32	-1.2
3,765,451	+		DDA3937_RS16530	0.32	-1.2
3,765,451	+		DDA3937_RS16530	0.32	-0.2
3,765,451	+		DDA3937_RS16530	0.32	-1.5
3,765,452	-		DDA3937_RS16530	0.32	-0.6
3,765,452	-				-1.6
3,765,452	-		DDA3937_RS16530	0.32	-0.9
3,765,452	-		DDA3937_RS16530	0.32	-2.7
3,765,474	+		DDA3937_RS16530	0.34	+1.4
3,765,474	+		DDA3937_RS16530	0.34	-3.4
3,765,475	-		DDA3937_RS16530	0.34	-2.2
3,765,475	-		DDA3937_RS16530	0.34	-1.3
3,765,567	+		DDA3937_RS16530	0.41	-1.9
3,765,620	+		DDA3937_RS16530	0.46	-2.0
3,765,620	+		DDA3937_RS16530	0.46	-0.3
3,765,620	+		DDA3937_RS16530	0.46	-3.0
3,765,620	+		DDA3937_RS16530	0.46	-2.4
3,765,620	+		DDA3937_RS16530	0.46	-2.8
3,765,620	+		DDA3937_RS16530	0.46	-1.4
3,765,620	+		DDA3937_RS16530	0.46	-2.2
3,765,621	-		DDA3937_RS16530	0.46	-1.4
3,765,621	-		DDA3937_RS16530	0.46	-2.9
3,765,621	-		DDA3937_RS16530	0.46	-0.8
3,765,621	-		DDA3937_RS16530	0.46	-0.2
3,765,621	-		DDA3937_RS16530	0.46	-1.4
3,765,621	-		DDA3937_RS16530	0.46	-3.8
3,765,621	-		DDA3937_RS16530	0.46	-3.4
3,765,621	-		DDA3937_RS16530	0.46	-2.0
3,765,621	-		DDA3937_RS16530	0.46	-1.3
3,765,621	-		DDA3937_RS16530	0.46	-3.4
3,765,679	+		DDA3937_RS16530	0.50	-2.0
3,765,679	+		DDA3937_RS16530	0.50	-0.6
3,765,679	+		DDA3937_RS16530	0.50	-2.6
3,765,680	-		DDA3937_RS16530	0.50	-1.2
3,765,680	-		DDA3937_RS16530	0.50	-0.2
3,765,680	-		DDA3937_RS16530	0.50	-2.8
3,765,680	-		DDA3937_RS16530	0.50	-0.1
3,765,680	-		DDA3937_RS16530	0.50	-1.7
3,765,830	-		DDA3937_RS16530	0.62	-1.8
3,765,830	-		DDA3937_RS16530	0.62	-0.7
3,765,830	-		DDA3937_RS16530	0.62	-1.2
3,765,857	+		DDA3937_RS16530	0.64	-1.1
3,765,858	-		DDA3937_RS16530	0.65	-1.5
3,765,858	-		DDA3937_RS16530	0.65	-0.6
3,765,858	-		DDA3937_RS16530	0.65	+1.4
3,765,923	-		DDA3937_RS16530	0.70	-1.4
3,765,923	-		DDA3937_RS16530	0.70	-1.0
3,765,923	-		DDA3937_RS16530	0.70	-0.2
3,765,923	-		DDA3937_RS16530	0.70	-0.5
3,765,947	+		DDA3937_RS16530	0.72	-2.0
3,765,947	+		DDA3937_RS16530	0.72	-1.3
3,765,947	+		DDA3937_RS16530	0.72	-2.3
3,765,947	+		DDA3937_RS16530	0.72	-1.1
3,765,947	+		DDA3937_RS16530	0.72	-1.0
3,765,947	+		DDA3937_RS16530	0.72	-1.8
3,765,947	+		DDA3937_RS16530	0.72	-1.6
3,765,947	+		DDA3937_RS16530	0.72	-3.1
3,765,947	+		DDA3937_RS16530	0.72	-2.0
3,765,948	-		DDA3937_RS16530	0.72	-1.7
3,765,948	-		DDA3937_RS16530	0.72	-1.5
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-2.3
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-1.3
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-1.7
3,765,948	-		DDA3937_RS16530	0.72	-0.8
3,765,948	-		DDA3937_RS16530	0.72	-0.3
3,765,948	-				-1.0
3,765,948	-		DDA3937_RS16530	0.72	-0.3
3,765,948	-		DDA3937_RS16530	0.72	-2.0
3,765,973	+		DDA3937_RS16530	0.74	-1.2
3,766,262	+				+0.0
3,766,262	+				+2.4
3,766,314	+				+0.8
3,766,318	+				-0.4
3,766,318	+				-0.6
3,766,319	-				+0.8
3,766,319	-				+0.3
3,766,319	-				+0.9
3,766,319	-				-1.9
3,766,426	+		DDA3937_RS16535	0.10	-0.2
3,766,427	-		DDA3937_RS16535	0.10	+0.3
3,766,679	-		DDA3937_RS16535	0.33	-1.6
3,766,694	+		DDA3937_RS16535	0.35	-1.1
3,767,033	-		DDA3937_RS16535	0.65	-1.0
3,767,136	+		DDA3937_RS16535	0.75	-1.7
3,767,136	+		DDA3937_RS16535	0.75	-2.4
3,767,136	+		DDA3937_RS16535	0.75	-1.1
3,767,137	-		DDA3937_RS16535	0.75	-2.8
3,767,335	+				-1.8
3,767,336	-				-1.1
3,767,416	+				-1.4
3,767,417	-				-1.4
3,767,417	-				-0.2
3,767,441	+				-2.0
3,767,441	+				+0.4
3,767,441	+				-0.4
3,767,441	+				-0.4
3,767,442	-				-1.6
3,767,442	-				-1.8
3,767,442	-				+0.3
3,767,443	+				-2.8
3,767,451	+				-1.4
3,767,451	+				+1.0
3,767,451	+				-0.4
3,767,452	-				-1.3
3,767,470	+				+1.0
3,767,487	+				+1.6
3,767,584	+		DDA3937_RS16540	0.12	-1.9
3,767,642	-				+0.4
3,767,642	-		DDA3937_RS16540	0.28	-0.2
3,767,650	-		DDA3937_RS16540	0.30	+0.5
3,767,656	-		DDA3937_RS16540	0.32	-1.9
3,767,659	-		DDA3937_RS16540	0.33	-1.0
3,767,711	+				-1.0
3,767,712	-		DDA3937_RS16540	0.47	-0.1
3,767,712	-		DDA3937_RS16540	0.47	+0.5
3,767,712	-		DDA3937_RS16540	0.47	+0.9
3,767,853	-		DDA3937_RS16540	0.86	+0.4
3,767,914	+				+1.6
3,767,915	-				+0.1
3,767,919	-				-1.4
3,767,919	-				+1.7
3,767,919	-				-2.0
3,768,042	+				-1.2
3,768,043	-				+1.4
3,768,044	+				+1.3
3,768,068	+				-0.2
3,768,069	-				-1.2
3,768,134	-				-3.0
3,768,141	+				-0.9
3,768,141	+				-0.2
3,768,141	+				-0.4
3,768,141	+				+0.4
3,768,141	+				-0.4
3,768,141	+				-1.0
3,768,142	-				+3.0
3,768,142	-				-0.6
3,768,142	-				+0.6
3,768,142	-				+0.6
3,768,142	-				-1.1
3,768,142	-				+0.0
3,768,307	+		DDA3937_RS16545	0.20	-1.8
3,768,308	-		DDA3937_RS16545	0.20	+1.7
3,768,314	+		DDA3937_RS16545	0.20	-1.4
3,768,315	-		DDA3937_RS16545	0.20	-0.6
3,768,325	+		DDA3937_RS16545	0.21	+1.7
3,768,326	-		DDA3937_RS16545	0.21	-1.0