Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16530

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,764,097	+		DDA3937_RS16520	0.54	+1.2
3,764,097	+		DDA3937_RS16520	0.54	-1.3
3,764,098	-		DDA3937_RS16520	0.54	+0.8
3,764,098	-				-0.6
3,764,224	+		DDA3937_RS16520	0.65	-1.0
3,764,225	-		DDA3937_RS16520	0.65	-0.1
3,764,225	-		DDA3937_RS16520	0.65	+0.5
3,764,225	-		DDA3937_RS16520	0.65	-0.8
3,764,252	-		DDA3937_RS16520	0.67	-1.4
3,764,252	-		DDA3937_RS16520	0.67	-0.3
3,764,253	+		DDA3937_RS16520	0.67	-0.6
3,764,253	+				+0.0
3,764,254	-		DDA3937_RS16520	0.67	-0.4
3,764,269	+		DDA3937_RS16520	0.68	-0.1
3,764,270	-		DDA3937_RS16520	0.68	+0.8
3,764,285	-		DDA3937_RS16520	0.70	+0.0
3,764,432	-		DDA3937_RS16520	0.82	-0.1
3,764,487	+		DDA3937_RS16520	0.86	-1.7
3,764,488	-		DDA3937_RS16520	0.86	-1.3
3,764,529	+		DDA3937_RS16520	0.90	+0.5
3,764,529	+		DDA3937_RS16520	0.90	-0.6
3,764,529	+		DDA3937_RS16520	0.90	-0.4
3,764,574	+				-0.5
3,764,574	+				-0.3
3,764,600	-				-0.1
3,764,601	+				-2.3
3,764,601	+				+0.9
3,764,631	-				-0.6
3,764,631	-				+0.5
3,764,686	-				-0.7
3,764,686	-				+1.1
3,764,695	+				+0.4
3,764,771	+				-0.3
3,764,771	+				+1.9
3,764,772	-				+0.3
3,764,772	-				-1.1
3,764,772	-				-1.6
3,764,772	-				-1.8
3,764,772	-				+0.3
3,764,772	-				-0.1
3,764,772	-				-1.0
3,764,885	+		DDA3937_RS16525	0.88	+1.0
3,764,885	+		DDA3937_RS16525	0.88	-1.2
3,764,885	+		DDA3937_RS16525	0.88	-0.6
3,764,886	-				+1.1
3,764,886	-				-0.7
3,764,886	-				+0.4
3,764,886	-				-0.0
3,764,887	+				-1.3
3,764,928	+				+0.2
3,764,928	+				+0.0
3,764,928	+				+0.1
3,764,928	+				-0.1
3,764,929	-				+0.4
3,764,929	-				+1.4
3,764,943	+				-0.1
3,764,944	-				-0.2
3,764,944	-				+1.0
3,764,944	-				-1.7
3,764,983	+				-1.0
3,764,983	+				+1.9
3,765,087	+				-2.2
3,765,087	+				-1.4
3,765,087	+				+0.1
3,765,087	+				+0.4
3,765,087	+				+0.4
3,765,087	+				+0.4
3,765,087	+				-2.3
3,765,088	-				-2.1
3,765,088	-				-0.8
3,765,088	-				-0.6
3,765,088	-				-0.8
3,765,088	-				-1.3
3,765,088	-				-1.1
3,765,088	-				-2.1
3,765,088	-				-0.6
3,765,089	+				-0.0
3,765,089	+				-0.2
3,765,090	-				-1.2
3,765,090	-				-2.6
3,765,090	-				-1.2
3,765,090	-				+0.4
3,765,090	-				-2.0
3,765,090	-				-0.7
3,765,209	+		DDA3937_RS16530	0.13	+0.0
3,765,209	+		DDA3937_RS16530	0.13	+0.5
3,765,209	+		DDA3937_RS16530	0.13	+1.8
3,765,209	+		DDA3937_RS16530	0.13	-2.3
3,765,209	+		DDA3937_RS16530	0.13	-2.7
3,765,210	-		DDA3937_RS16530	0.13	-0.3
3,765,210	-		DDA3937_RS16530	0.13	-1.4
3,765,226	+		DDA3937_RS16530	0.14	-0.6
3,765,226	+		DDA3937_RS16530	0.14	-1.2
3,765,227	-		DDA3937_RS16530	0.14	-1.4
3,765,227	-		DDA3937_RS16530	0.14	-1.4
3,765,256	+		DDA3937_RS16530	0.17	-1.3
3,765,257	-		DDA3937_RS16530	0.17	-1.6
3,765,257	-		DDA3937_RS16530	0.17	-1.9
3,765,327	+		DDA3937_RS16530	0.22	-0.1
3,765,328	-		DDA3937_RS16530	0.22	-1.6
3,765,328	-		DDA3937_RS16530	0.22	-2.5
3,765,328	-		DDA3937_RS16530	0.22	-1.1
3,765,377	+		DDA3937_RS16530	0.26	-2.8
3,765,377	+		DDA3937_RS16530	0.26	-1.7
3,765,377	+		DDA3937_RS16530	0.26	-0.1
3,765,378	-		DDA3937_RS16530	0.26	-2.0
3,765,391	+		DDA3937_RS16530	0.27	-2.8
3,765,392	-		DDA3937_RS16530	0.27	-2.4
3,765,451	+		DDA3937_RS16530	0.32	-1.7
3,765,451	+		DDA3937_RS16530	0.32	-2.4
3,765,451	+		DDA3937_RS16530	0.32	+1.4
3,765,451	+		DDA3937_RS16530	0.32	-3.3
3,765,451	+		DDA3937_RS16530	0.32	-1.8
3,765,451	+		DDA3937_RS16530	0.32	-2.0
3,765,451	+		DDA3937_RS16530	0.32	-0.1
3,765,451	+		DDA3937_RS16530	0.32	-2.1
3,765,451	+		DDA3937_RS16530	0.32	-1.2
3,765,451	+		DDA3937_RS16530	0.32	-1.2
3,765,451	+		DDA3937_RS16530	0.32	-0.2
3,765,451	+		DDA3937_RS16530	0.32	-1.5
3,765,452	-		DDA3937_RS16530	0.32	-0.6
3,765,452	-				-1.6
3,765,452	-		DDA3937_RS16530	0.32	-0.9
3,765,452	-		DDA3937_RS16530	0.32	-2.7
3,765,474	+		DDA3937_RS16530	0.34	+1.4
3,765,474	+		DDA3937_RS16530	0.34	-3.4
3,765,475	-		DDA3937_RS16530	0.34	-2.2
3,765,475	-		DDA3937_RS16530	0.34	-1.3
3,765,567	+		DDA3937_RS16530	0.41	-1.9
3,765,620	+		DDA3937_RS16530	0.46	-2.0
3,765,620	+		DDA3937_RS16530	0.46	-0.3
3,765,620	+		DDA3937_RS16530	0.46	-3.0
3,765,620	+		DDA3937_RS16530	0.46	-2.4
3,765,620	+		DDA3937_RS16530	0.46	-2.8
3,765,620	+		DDA3937_RS16530	0.46	-1.4
3,765,620	+		DDA3937_RS16530	0.46	-2.2
3,765,621	-		DDA3937_RS16530	0.46	-1.4
3,765,621	-		DDA3937_RS16530	0.46	-2.9
3,765,621	-		DDA3937_RS16530	0.46	-0.8
3,765,621	-		DDA3937_RS16530	0.46	-0.2
3,765,621	-		DDA3937_RS16530	0.46	-1.4
3,765,621	-		DDA3937_RS16530	0.46	-3.8
3,765,621	-		DDA3937_RS16530	0.46	-3.4
3,765,621	-		DDA3937_RS16530	0.46	-2.0
3,765,621	-		DDA3937_RS16530	0.46	-1.3
3,765,621	-		DDA3937_RS16530	0.46	-3.4
3,765,679	+		DDA3937_RS16530	0.50	-2.0
3,765,679	+		DDA3937_RS16530	0.50	-0.6
3,765,679	+		DDA3937_RS16530	0.50	-2.6
3,765,680	-		DDA3937_RS16530	0.50	-1.2
3,765,680	-		DDA3937_RS16530	0.50	-0.2
3,765,680	-		DDA3937_RS16530	0.50	-2.8
3,765,680	-		DDA3937_RS16530	0.50	-0.1
3,765,680	-		DDA3937_RS16530	0.50	-1.7
3,765,830	-		DDA3937_RS16530	0.62	-1.8
3,765,830	-		DDA3937_RS16530	0.62	-0.7
3,765,830	-		DDA3937_RS16530	0.62	-1.2
3,765,857	+		DDA3937_RS16530	0.64	-1.1
3,765,858	-		DDA3937_RS16530	0.65	-1.5
3,765,858	-		DDA3937_RS16530	0.65	-0.6
3,765,858	-		DDA3937_RS16530	0.65	+1.4
3,765,923	-		DDA3937_RS16530	0.70	-1.4
3,765,923	-		DDA3937_RS16530	0.70	-1.0
3,765,923	-		DDA3937_RS16530	0.70	-0.2
3,765,923	-		DDA3937_RS16530	0.70	-0.5
3,765,947	+		DDA3937_RS16530	0.72	-2.0
3,765,947	+		DDA3937_RS16530	0.72	-1.3
3,765,947	+		DDA3937_RS16530	0.72	-2.3
3,765,947	+		DDA3937_RS16530	0.72	-1.1
3,765,947	+		DDA3937_RS16530	0.72	-1.0
3,765,947	+		DDA3937_RS16530	0.72	-1.8
3,765,947	+		DDA3937_RS16530	0.72	-1.6
3,765,947	+		DDA3937_RS16530	0.72	-3.1
3,765,947	+		DDA3937_RS16530	0.72	-2.0
3,765,948	-		DDA3937_RS16530	0.72	-1.7
3,765,948	-		DDA3937_RS16530	0.72	-1.5
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-2.3
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-1.3
3,765,948	-		DDA3937_RS16530	0.72	-2.2
3,765,948	-		DDA3937_RS16530	0.72	-1.7
3,765,948	-		DDA3937_RS16530	0.72	-0.8
3,765,948	-		DDA3937_RS16530	0.72	-0.3
3,765,948	-				-1.0
3,765,948	-		DDA3937_RS16530	0.72	-0.3
3,765,948	-		DDA3937_RS16530	0.72	-2.0
3,765,973	+		DDA3937_RS16530	0.74	-1.2
3,766,262	+				+0.0
3,766,262	+				+2.4
3,766,314	+				+0.8
3,766,318	+				-0.4
3,766,318	+				-0.6
3,766,319	-				+0.8
3,766,319	-				+0.3
3,766,319	-				+0.9
3,766,319	-				-1.9
3,766,426	+		DDA3937_RS16535	0.10	-0.2
3,766,427	-		DDA3937_RS16535	0.10	+0.3
3,766,679	-		DDA3937_RS16535	0.33	-1.6
3,766,694	+		DDA3937_RS16535	0.35	-1.1
3,767,033	-		DDA3937_RS16535	0.65	-1.0
3,767,136	+		DDA3937_RS16535	0.75	-1.7
3,767,136	+		DDA3937_RS16535	0.75	-2.4
3,767,136	+		DDA3937_RS16535	0.75	-1.1
3,767,137	-		DDA3937_RS16535	0.75	-2.8