Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16105

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,679,114	+		DDA3937_RS16100	0.68	-2.5
3,679,114	+		DDA3937_RS16100	0.68	-1.5
3,679,231	+		DDA3937_RS16100	0.73	+0.2
3,679,231	+		DDA3937_RS16100	0.73	-1.0
3,679,231	+				+0.3
3,679,262	-		DDA3937_RS16100	0.74	-0.5
3,679,267	+		DDA3937_RS16100	0.74	-0.3
3,679,267	+		DDA3937_RS16100	0.74	-1.5
3,679,590	-		DDA3937_RS16100	0.87	+0.6
3,679,605	-		DDA3937_RS16100	0.87	-0.3
3,679,605	-		DDA3937_RS16100	0.87	+0.8
3,679,605	-		DDA3937_RS16100	0.87	-0.5
3,679,619	-		DDA3937_RS16100	0.88	-1.3
3,679,658	-		DDA3937_RS16100	0.89	-0.5
3,679,658	-		DDA3937_RS16100	0.89	-0.7
3,679,658	-		DDA3937_RS16100	0.89	+0.5
3,679,721	+				+0.9
3,679,849	+				-1.0
3,679,915	+				+0.6
3,679,916	-				-0.3
3,679,916	-				-1.4
3,679,934	-				-0.1
3,679,934	-				+1.6
3,679,934	-				-1.3
3,679,934	-				-2.4
3,679,934	-				-2.0
3,679,945	+				-1.0
3,679,945	+				+0.6
3,679,945	+				+0.6
3,679,945	+				+1.4
3,679,945	+				-0.2
3,679,945	+				-0.1
3,679,945	+				-0.7
3,679,946	-				+0.2
3,679,946	-				+1.1
3,679,949	+				-2.1
3,679,949	+				+0.3
3,679,949	+				-0.1
3,679,950	-				+0.5
3,679,950	-				+0.1
3,679,950	-				-2.9
3,679,950	-				-0.2
3,679,950	-				-0.9
3,679,975	+				+0.8
3,679,975	+				-0.7
3,679,975	+				+0.3
3,679,975	+				+0.5
3,679,976	-				+0.0
3,680,017	+				+1.0
3,680,020	+				-0.5
3,680,020	+				-0.3
3,680,020	+				+0.4
3,680,021	-				-0.2
3,680,024	-				-1.8
3,680,066	-				+1.1
3,680,066	-				+2.1
3,680,070	+				-0.7
3,680,070	+				-2.2
3,680,071	-				-0.3
3,680,073	-				+2.3
3,680,073	-				-0.4
3,680,096	-				+0.5
3,680,153	-		DDA3937_RS16105	0.12	+2.5
3,680,153	-		DDA3937_RS16105	0.12	+2.4
3,680,221	+		DDA3937_RS16105	0.21	-1.0
3,680,221	+		DDA3937_RS16105	0.21	+0.3
3,680,237	-		DDA3937_RS16105	0.23	+1.3
3,680,284	+		DDA3937_RS16105	0.30	-0.0
3,680,284	+		DDA3937_RS16105	0.30	+1.1
3,680,384	+		DDA3937_RS16105	0.43	-0.4
3,680,385	-		DDA3937_RS16105	0.44	+1.9
3,680,524	+		DDA3937_RS16105	0.63	-0.7
3,680,572	+		DDA3937_RS16105	0.69	+0.1
3,680,591	+		DDA3937_RS16105	0.72	-0.2
3,680,591	+		DDA3937_RS16105	0.72	+1.8
3,680,591	+				-0.7
3,680,591	+		DDA3937_RS16105	0.72	+2.1
3,680,592	-		DDA3937_RS16105	0.72	-1.5
3,680,707	+		DDA3937_RS16105	0.88	+0.9
3,680,708	-		DDA3937_RS16105	0.88	-0.7
3,680,709	+		DDA3937_RS16105	0.88	+0.4
3,680,709	+		DDA3937_RS16105	0.88	-0.8
3,680,710	-		DDA3937_RS16105	0.88	-1.5
3,680,710	-		DDA3937_RS16105	0.88	-0.3
3,680,710	-		DDA3937_RS16105	0.88	+1.6
3,680,710	-		DDA3937_RS16105	0.88	-0.7
3,680,746	+				-0.7
3,680,746	+				+0.6
3,680,746	+				-0.7
3,680,786	+				-1.0
3,680,786	+				+0.3
3,680,786	+				-0.3
3,680,786	+				-1.3
3,680,787	-				+0.5
3,680,874	+				-0.1
3,680,874	+				-0.3
3,680,874	+				+0.9
3,680,874	+				+2.5
3,680,875	-				+4.8
3,680,875	-				+3.1
3,680,875	-				+2.3
3,680,875	-				+5.1
3,680,875	-				+6.2
3,680,875	-				+3.3
3,680,879	+				-0.1
3,680,879	+				+0.8
3,680,880	-				+3.0
3,680,924	+		DDA3937_RS16110	0.11	+4.0
3,680,925	-		DDA3937_RS16110	0.11	+4.6
3,680,925	-				-0.3
3,680,932	+		DDA3937_RS16110	0.12	+3.0
3,680,932	+		DDA3937_RS16110	0.12	-1.3
3,680,932	+		DDA3937_RS16110	0.12	+2.7
3,680,932	+		DDA3937_RS16110	0.12	+2.7
3,680,932	+		DDA3937_RS16110	0.12	-1.9
3,680,932	+		DDA3937_RS16110	0.12	+3.9
3,680,932	+				-0.7
3,680,932	+		DDA3937_RS16110	0.12	+3.3
3,680,933	-		DDA3937_RS16110	0.12	+3.1
3,680,933	-		DDA3937_RS16110	0.12	+3.7
3,680,933	-		DDA3937_RS16110	0.12	+3.7
3,680,933	-		DDA3937_RS16110	0.12	+3.4
3,680,933	-		DDA3937_RS16110	0.12	+5.8
3,680,933	-		DDA3937_RS16110	0.12	+0.9
3,680,933	-		DDA3937_RS16110	0.12	+2.6
3,680,933	-				+1.7
3,680,933	-		DDA3937_RS16110	0.12	+3.6
3,680,933	-		DDA3937_RS16110	0.12	+0.7
3,680,933	-		DDA3937_RS16110	0.12	+1.6
3,680,933	-		DDA3937_RS16110	0.12	+2.3
3,680,933	-		DDA3937_RS16110	0.12	+2.8
3,680,933	-		DDA3937_RS16110	0.12	+4.4
3,680,933	-		DDA3937_RS16110	0.12	+3.6
3,680,933	-		DDA3937_RS16110	0.12	+4.5
3,680,933	-		DDA3937_RS16110	0.12	+4.8
3,680,933	-		DDA3937_RS16110	0.12	+2.2
3,680,991	-		DDA3937_RS16110	0.18	+3.5
3,681,034	+		DDA3937_RS16110	0.22	+4.1
3,681,035	-		DDA3937_RS16110	0.23	+3.0
3,681,129	-		DDA3937_RS16110	0.32	+3.8
3,681,129	-		DDA3937_RS16110	0.32	-2.5
3,681,129	-		DDA3937_RS16110	0.32	+3.7
3,681,129	-		DDA3937_RS16110	0.32	+5.3
3,681,280	+		DDA3937_RS16110	0.48	+7.9
3,681,281	-		DDA3937_RS16110	0.48	+4.9
3,681,344	+		DDA3937_RS16110	0.54	+2.9
3,681,344	+		DDA3937_RS16110	0.54	+1.9
3,681,344	+		DDA3937_RS16110	0.54	+3.3
3,681,344	+		DDA3937_RS16110	0.54	+4.2
3,681,344	+		DDA3937_RS16110	0.54	+3.0
3,681,345	-		DDA3937_RS16110	0.54	+3.7
3,681,345	-		DDA3937_RS16110	0.54	+3.7
3,681,345	-		DDA3937_RS16110	0.54	+5.9
3,681,345	-		DDA3937_RS16110	0.54	+3.0
3,681,345	-		DDA3937_RS16110	0.54	+6.0
3,681,345	-		DDA3937_RS16110	0.54	-0.3
3,681,345	-		DDA3937_RS16110	0.54	+3.1
3,681,345	-		DDA3937_RS16110	0.54	+5.9
3,681,345	-		DDA3937_RS16110	0.54	+1.9
3,681,348	+		DDA3937_RS16110	0.55	+5.0
3,681,349	-		DDA3937_RS16110	0.55	+2.4
3,681,349	-		DDA3937_RS16110	0.55	+2.8
3,681,349	-		DDA3937_RS16110	0.55	+1.0
3,681,424	+		DDA3937_RS16110	0.62	+4.2
3,681,500	+		DDA3937_RS16110	0.70	+4.4
3,681,500	+		DDA3937_RS16110	0.70	+1.6
3,681,500	+		DDA3937_RS16110	0.70	+4.0
3,681,500	+		DDA3937_RS16110	0.70	+3.2
3,681,515	+		DDA3937_RS16110	0.72	+5.4
3,681,515	+		DDA3937_RS16110	0.72	+4.6
3,681,529	+		DDA3937_RS16110	0.73	+3.1
3,681,529	+		DDA3937_RS16110	0.73	+3.3
3,681,529	+		DDA3937_RS16110	0.73	-1.3
3,681,530	-		DDA3937_RS16110	0.73	+4.5
3,681,530	-		DDA3937_RS16110	0.73	+3.5
3,681,657	+		DDA3937_RS16110	0.86	-0.6
3,681,684	+		DDA3937_RS16110	0.89	+2.4
3,681,684	+		DDA3937_RS16110	0.89	+3.4
3,681,685	-		DDA3937_RS16110	0.89	+4.4
3,681,732	+				+4.3
3,681,732	+				+2.8
3,681,732	+				+1.6
3,681,733	-				+2.8
3,681,733	-				+0.8
3,681,777	+				+2.1
3,681,777	+				+1.4
3,681,777	+				+2.1
3,681,778	-				-1.3
3,681,778	-				+0.4
3,681,778	-				+5.9
3,681,778	-				-0.3
3,681,778	-				+2.9
3,681,778	-				+3.3
3,681,778	-				+1.3
3,681,791	+				+2.8
3,681,791	+				+4.1
3,681,791	+				+3.3
3,681,791	+				+2.9
3,681,791	+				+4.1
3,681,791	+				+3.1
3,681,791	+				+2.3
3,681,791	+				+3.5
3,681,791	+				+5.9
3,681,791	+				+4.1
3,681,791	+				+2.0
3,681,792	-				+3.4
3,681,792	-				+0.5
3,681,792	-				+2.9
3,681,792	-				-0.7
3,681,792	-				+3.3
3,681,792	-				-1.3
3,681,792	-				+1.9
3,681,792	-				-0.5
3,681,792	-				+2.9
3,681,792	-				+3.8
3,681,792	-				-0.8
3,681,792	-				+4.3
3,681,792	-				+3.9
3,681,792	-				+2.0
3,681,792	-				+1.9
3,681,792	-				+1.4
3,681,792	-				+0.9
3,681,792	-				-0.3
3,681,794	+				+3.5
3,681,794	+				+2.0
3,681,794	+				+3.3
3,681,794	+				+2.2
3,681,794	+				+2.9
3,681,794	+				+6.5
3,681,794	+				+1.5
3,681,794	+				+1.6
3,681,794	+				+3.2
3,681,794	+				+1.8
3,681,794	+				+5.3
3,681,794	+				+3.0
3,681,794	+				+3.7
3,681,794	+				+4.2
3,681,794	+				+3.1
3,681,794	+				+3.6
3,681,794	+				+3.0
3,681,794	+				+5.7
3,681,794	+				+3.4