Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15330

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,518,739	+		DDA3937_RS15325	0.13	-0.1
3,518,739	+		DDA3937_RS15325	0.13	+0.3
3,518,786	+		DDA3937_RS15325	0.18	-1.7
3,518,786	+		DDA3937_RS15325	0.18	-0.8
3,518,839	+		DDA3937_RS15325	0.23	-0.6
3,518,840	-		DDA3937_RS15325	0.23	+1.9
3,518,840	-		DDA3937_RS15325	0.23	+2.5
3,518,891	+		DDA3937_RS15325	0.29	+2.8
3,518,892	-		DDA3937_RS15325	0.29	-1.5
3,518,892	-		DDA3937_RS15325	0.29	+0.2
3,518,963	-		DDA3937_RS15325	0.36	-0.3
3,518,966	+		DDA3937_RS15325	0.36	-0.0
3,518,966	+		DDA3937_RS15325	0.36	+0.5
3,518,966	+		DDA3937_RS15325	0.36	-1.3
3,518,966	+		DDA3937_RS15325	0.36	+0.4
3,518,966	+		DDA3937_RS15325	0.36	+0.5
3,518,966	+		DDA3937_RS15325	0.36	-0.7
3,518,966	+		DDA3937_RS15325	0.36	+0.4
3,518,966	+		DDA3937_RS15325	0.36	+0.7
3,518,966	+		DDA3937_RS15325	0.36	+0.6
3,518,966	+		DDA3937_RS15325	0.36	-0.3
3,518,967	-		DDA3937_RS15325	0.36	-2.2
3,518,967	-		DDA3937_RS15325	0.36	+0.8
3,518,967	-		DDA3937_RS15325	0.36	-0.3
3,518,967	-		DDA3937_RS15325	0.36	-0.8
3,519,010	+		DDA3937_RS15325	0.41	+2.7
3,519,043	-		DDA3937_RS15325	0.44	+1.0
3,519,166	-		DDA3937_RS15325	0.57	+1.3
3,519,166	-		DDA3937_RS15325	0.57	-1.9
3,519,166	-		DDA3937_RS15325	0.57	-0.1
3,519,167	+		DDA3937_RS15325	0.57	+1.1
3,519,171	+		DDA3937_RS15325	0.57	+1.0
3,519,228	+		DDA3937_RS15325	0.63	+0.5
3,519,239	+		DDA3937_RS15325	0.64	-0.3
3,519,239	+		DDA3937_RS15325	0.64	+0.3
3,519,243	+		DDA3937_RS15325	0.65	+0.8
3,519,244	-		DDA3937_RS15325	0.65	-1.8
3,519,244	-		DDA3937_RS15325	0.65	-0.5
3,519,297	-		DDA3937_RS15325	0.70	-1.0
3,519,297	-		DDA3937_RS15325	0.70	-0.5
3,519,297	-		DDA3937_RS15325	0.70	-1.2
3,519,307	+		DDA3937_RS15325	0.71	-1.9
3,519,322	+		DDA3937_RS15325	0.73	-0.1
3,519,399	-		DDA3937_RS15325	0.80	-0.4
3,519,399	-		DDA3937_RS15325	0.80	+0.6
3,519,399	-		DDA3937_RS15325	0.80	-2.0
3,519,430	+		DDA3937_RS15325	0.84	+0.3
3,519,430	+		DDA3937_RS15325	0.84	-2.4
3,519,431	-		DDA3937_RS15325	0.84	-1.0
3,519,435	+		DDA3937_RS15325	0.84	+0.7
3,519,435	+		DDA3937_RS15325	0.84	-0.9
3,519,435	+		DDA3937_RS15325	0.84	-0.7
3,519,435	+		DDA3937_RS15325	0.84	-1.5
3,519,436	-		DDA3937_RS15325	0.84	-2.3
3,519,436	-		DDA3937_RS15325	0.84	-0.0
3,519,436	-		DDA3937_RS15325	0.84	-0.2
3,519,436	-		DDA3937_RS15325	0.84	-1.6
3,519,436	-		DDA3937_RS15325	0.84	-1.9
3,519,438	-		DDA3937_RS15325	0.84	-1.0
3,519,438	-		DDA3937_RS15325	0.84	-0.2
3,519,438	-		DDA3937_RS15325	0.84	-1.4
3,519,440	+		DDA3937_RS15325	0.85	-0.2
3,519,454	+		DDA3937_RS15325	0.86	+0.3
3,519,454	+		DDA3937_RS15325	0.86	-1.7
3,519,569	+				+0.3
3,519,588	+				-0.9
3,519,594	-				-0.2
3,519,594	-				-1.3
3,519,596	+				-0.4
3,519,596	+				-1.3
3,519,596	+				+0.5
3,519,597	-				-0.5
3,519,597	-				+0.1
3,519,597	-				-1.0
3,519,597	-				-1.3
3,519,597	-				-0.7
3,519,603	+				-0.2
3,519,603	+				+0.8
3,519,683	+				-1.4
3,519,683	+				-1.3
3,519,683	+				-0.3
3,519,683	+				-1.0
3,519,683	+				-0.5
3,519,683	+				-0.0
3,519,683	+				+0.9
3,519,684	-				+0.3
3,519,684	-				-0.5
3,519,684	-				-0.4
3,519,724	-				+0.1
3,519,741	-				-1.9
3,519,775	-				-0.1
3,519,805	+				-0.2
3,519,843	-		DDA3937_RS15330	0.14	+2.7
3,519,862	+				+1.3
3,519,862	+				-0.3
3,519,953	-		DDA3937_RS15330	0.27	+1.1
3,520,028	-		DDA3937_RS15330	0.36	-1.7
3,520,063	+		DDA3937_RS15330	0.40	+0.9
3,520,097	-		DDA3937_RS15330	0.44	+2.0
3,520,127	-		DDA3937_RS15330	0.47	-0.6
3,520,144	+		DDA3937_RS15330	0.49	-0.5
3,520,224	-		DDA3937_RS15330	0.59	-0.2
3,520,224	-		DDA3937_RS15330	0.59	+0.7
3,520,224	-		DDA3937_RS15330	0.59	-0.4
3,520,247	-		DDA3937_RS15330	0.61	+1.1
3,520,247	-		DDA3937_RS15330	0.61	-0.2
3,520,247	-		DDA3937_RS15330	0.61	-1.6
3,520,258	+		DDA3937_RS15330	0.63	+1.4
3,520,258	+		DDA3937_RS15330	0.63	-0.8
3,520,258	+		DDA3937_RS15330	0.63	-0.7
3,520,319	-		DDA3937_RS15330	0.70	-1.1
3,520,320	+		DDA3937_RS15330	0.70	-1.1
3,520,321	-		DDA3937_RS15330	0.70	+0.2
3,520,321	-		DDA3937_RS15330	0.70	-1.9
3,520,321	-		DDA3937_RS15330	0.70	-0.0
3,520,360	+		DDA3937_RS15330	0.75	+0.9
3,520,360	+		DDA3937_RS15330	0.75	-0.1
3,520,361	-		DDA3937_RS15330	0.75	-2.3
3,520,380	-		DDA3937_RS15330	0.77	-0.4
3,520,388	-		DDA3937_RS15330	0.78	-1.2
3,520,447	+				-1.0
3,520,449	+		DDA3937_RS15330	0.85	+0.5
3,520,449	+		DDA3937_RS15330	0.85	-1.9
3,520,450	-		DDA3937_RS15330	0.85	+0.3
3,520,450	-		DDA3937_RS15330	0.85	-1.8
3,520,450	-		DDA3937_RS15330	0.85	+0.5
3,520,450	-		DDA3937_RS15330	0.85	-2.1
3,520,509	-				-1.7
3,520,509	-				-0.5
3,520,509	-				-1.9
3,520,528	+				-1.5
3,520,540	+				-0.3
3,520,540	+				-0.3
3,520,541	-				-0.9
3,520,576	+				-0.4
3,520,626	-				-0.8
3,520,626	-				-0.3
3,520,643	+				-0.8
3,520,643	+				-1.3
3,520,643	+				-1.1
3,520,649	-				+0.5
3,520,649	-				-0.5
3,520,659	+				-0.1
3,520,705	-				+0.5
3,520,745	-				+0.1
3,520,779	+				-0.0
3,520,780	-				-0.2
3,520,780	-				+0.2
3,520,805	+				-0.3
3,520,806	-				-0.4
3,520,819	+				-0.7
3,520,837	-				-1.0
3,520,840	+				-0.3
3,520,841	-				-1.5
3,520,848	+				-0.7
3,520,849	-				+1.1
3,520,869	+				-0.5
3,520,934	-				-0.1
3,520,934	-				-0.3
3,521,000	+				-1.5
3,521,031	+				-1.3
3,521,186	+		DDA3937_RS15335	0.22	-0.9
3,521,186	+		DDA3937_RS15335	0.22	-1.3
3,521,316	+		DDA3937_RS15335	0.38	-1.1
3,521,316	+		DDA3937_RS15335	0.38	-2.1
3,521,317	-		DDA3937_RS15335	0.39	-0.9
3,521,317	-		DDA3937_RS15335	0.39	-0.4
3,521,509	+		DDA3937_RS15335	0.62	-1.4
3,521,509	+		DDA3937_RS15335	0.62	+0.3
3,521,510	-		DDA3937_RS15335	0.63	-2.6