Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14645

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,352,312	-				-0.4
3,352,412	-		DDA3937_RS14640	0.20	+0.1
3,352,492	-		DDA3937_RS14640	0.30	-1.8
3,352,492	-		DDA3937_RS14640	0.30	+1.2
3,352,522	+		DDA3937_RS14640	0.33	+1.0
3,352,548	+		DDA3937_RS14640	0.37	-0.3
3,352,548	+		DDA3937_RS14640	0.37	+2.9
3,352,548	+		DDA3937_RS14640	0.37	+0.2
3,352,548	+		DDA3937_RS14640	0.37	+1.8
3,352,548	+		DDA3937_RS14640	0.37	-0.4
3,352,548	+		DDA3937_RS14640	0.37	+0.2
3,352,548	+		DDA3937_RS14640	0.37	-0.1
3,352,548	+		DDA3937_RS14640	0.37	-0.1
3,352,548	+		DDA3937_RS14640	0.37	-1.5
3,352,548	+		DDA3937_RS14640	0.37	+0.3
3,352,549	-		DDA3937_RS14640	0.37	-1.2
3,352,549	-		DDA3937_RS14640	0.37	-2.2
3,352,549	-		DDA3937_RS14640	0.37	-2.4
3,352,549	-		DDA3937_RS14640	0.37	-0.7
3,352,549	-		DDA3937_RS14640	0.37	-1.2
3,352,549	-		DDA3937_RS14640	0.37	-1.0
3,352,664	-		DDA3937_RS14640	0.51	-2.2
3,352,664	-		DDA3937_RS14640	0.51	+1.9
3,352,664	-		DDA3937_RS14640	0.51	-0.7
3,352,699	-		DDA3937_RS14640	0.55	-0.0
3,352,828	+		DDA3937_RS14640	0.71	-0.0
3,352,829	-		DDA3937_RS14640	0.71	+0.2
3,352,829	-		DDA3937_RS14640	0.71	-1.3
3,352,829	-		DDA3937_RS14640	0.71	+0.2
3,352,867	+		DDA3937_RS14640	0.76	+1.2
3,352,867	+		DDA3937_RS14640	0.76	-0.4
3,352,868	-		DDA3937_RS14640	0.76	-0.4
3,352,868	-		DDA3937_RS14640	0.76	+0.2
3,352,908	+		DDA3937_RS14640	0.81	+0.2
3,352,909	-		DDA3937_RS14640	0.81	+0.3
3,352,909	-		DDA3937_RS14640	0.81	-0.0
3,352,941	-		DDA3937_RS14640	0.85	-0.7
3,352,990	+				-0.8
3,353,083	+				+1.2
3,353,119	+				-1.7
3,353,185	+				-0.4
3,353,204	+				-0.0
3,353,204	+				+1.8
3,353,205	-				-1.5
3,353,205	-				-2.3
3,353,205	-				-0.2
3,353,205	-				-2.0
3,353,205	-				-0.5
3,353,205	-				+0.2
3,353,205	-				+1.0
3,353,205	-				-2.5
3,353,209	-				-0.1
3,353,213	+				-0.5
3,353,230	-				-0.6
3,353,297	+				+0.5
3,353,297	+				-2.8
3,353,297	+				-0.3
3,353,329	-				-0.4
3,353,329	-				+0.4
3,353,329	-				+0.6
3,353,329	-				+0.1
3,353,451	+		DDA3937_RS14645	0.13	-0.6
3,353,452	-		DDA3937_RS14645	0.13	+2.3
3,353,454	+		DDA3937_RS14645	0.13	+0.6
3,353,455	-		DDA3937_RS14645	0.13	+0.5
3,353,455	-		DDA3937_RS14645	0.13	-0.7
3,353,455	-		DDA3937_RS14645	0.13	-0.8
3,353,502	+		DDA3937_RS14645	0.16	-0.2
3,353,503	-		DDA3937_RS14645	0.16	-0.2
3,353,503	-		DDA3937_RS14645	0.16	-0.0
3,353,586	-		DDA3937_RS14645	0.20	-0.0
3,353,729	+		DDA3937_RS14645	0.28	+1.2
3,353,729	+		DDA3937_RS14645	0.28	-0.2
3,353,729	+		DDA3937_RS14645	0.28	+0.2
3,353,730	-		DDA3937_RS14645	0.28	-1.2
3,353,731	+		DDA3937_RS14645	0.28	+0.4
3,353,731	+		DDA3937_RS14645	0.28	-0.8
3,353,732	-		DDA3937_RS14645	0.28	-0.5
3,353,732	-		DDA3937_RS14645	0.28	-0.2
3,353,738	+		DDA3937_RS14645	0.28	-1.2
3,353,739	-		DDA3937_RS14645	0.28	-0.5
3,353,741	+		DDA3937_RS14645	0.28	-1.2
3,353,741	+		DDA3937_RS14645	0.28	-0.5
3,353,742	-		DDA3937_RS14645	0.28	-2.2
3,353,742	-		DDA3937_RS14645	0.28	-1.0
3,353,798	+		DDA3937_RS14645	0.31	+0.2
3,353,829	+		DDA3937_RS14645	0.33	+3.4
3,354,088	+		DDA3937_RS14645	0.47	-2.8
3,354,115	-		DDA3937_RS14645	0.48	+1.3
3,354,141	+		DDA3937_RS14645	0.50	+0.9
3,354,141	+		DDA3937_RS14645	0.50	+0.2
3,354,145	+		DDA3937_RS14645	0.50	-0.8
3,354,146	-				-0.4
3,354,146	-		DDA3937_RS14645	0.50	-1.3
3,354,160	+		DDA3937_RS14645	0.51	+3.1
3,354,160	+		DDA3937_RS14645	0.51	+3.2
3,354,161	-		DDA3937_RS14645	0.51	-0.7
3,354,161	-		DDA3937_RS14645	0.51	-3.4
3,354,227	+		DDA3937_RS14645	0.54	+0.5
3,354,227	+		DDA3937_RS14645	0.54	+1.0
3,354,228	-		DDA3937_RS14645	0.54	-2.9
3,354,246	-		DDA3937_RS14645	0.55	-1.5
3,354,246	-		DDA3937_RS14645	0.55	+1.6
3,354,261	+		DDA3937_RS14645	0.56	-1.0
3,354,261	+		DDA3937_RS14645	0.56	+1.3
3,354,262	-		DDA3937_RS14645	0.56	+0.0
3,354,453	-		DDA3937_RS14645	0.66	-0.8
3,354,476	+		DDA3937_RS14645	0.67	-0.1
3,354,477	-		DDA3937_RS14645	0.67	+1.7
3,354,477	-		DDA3937_RS14645	0.67	+0.7
3,354,492	+		DDA3937_RS14645	0.68	-1.5
3,354,492	+		DDA3937_RS14645	0.68	-1.7
3,354,492	+		DDA3937_RS14645	0.68	-1.3
3,354,492	+		DDA3937_RS14645	0.68	+0.3
3,354,493	-		DDA3937_RS14645	0.68	+0.5
3,354,534	+		DDA3937_RS14645	0.70	+0.2
3,354,534	+		DDA3937_RS14645	0.70	-0.7
3,354,585	+		DDA3937_RS14645	0.73	-0.4
3,354,585	+		DDA3937_RS14645	0.73	-0.4
3,354,586	-		DDA3937_RS14645	0.73	-1.5
3,354,587	+		DDA3937_RS14645	0.73	-0.4
3,354,587	+		DDA3937_RS14645	0.73	-0.6
3,354,587	+		DDA3937_RS14645	0.73	-1.8
3,354,587	+		DDA3937_RS14645	0.73	-1.7
3,354,587	+		DDA3937_RS14645	0.73	-3.2
3,354,587	+		DDA3937_RS14645	0.73	-1.6
3,354,587	+		DDA3937_RS14645	0.73	-2.8
3,354,587	+		DDA3937_RS14645	0.73	-2.1
3,354,588	-		DDA3937_RS14645	0.73	-0.9
3,354,588	-		DDA3937_RS14645	0.73	-0.2
3,354,588	-		DDA3937_RS14645	0.73	-1.1
3,354,588	-		DDA3937_RS14645	0.73	-1.5
3,354,588	-		DDA3937_RS14645	0.73	+0.2
3,354,588	-		DDA3937_RS14645	0.73	-2.3
3,354,588	-		DDA3937_RS14645	0.73	-0.7
3,354,588	-		DDA3937_RS14645	0.73	-0.6
3,354,588	-				-0.4
3,354,588	-		DDA3937_RS14645	0.73	-1.1
3,354,588	-		DDA3937_RS14645	0.73	+0.5
3,354,588	-		DDA3937_RS14645	0.73	+0.3
3,354,588	-		DDA3937_RS14645	0.73	-1.3
3,354,588	-		DDA3937_RS14645	0.73	+1.2
3,354,588	-		DDA3937_RS14645	0.73	-2.0
3,354,806	+		DDA3937_RS14645	0.85	-0.5
3,354,806	+		DDA3937_RS14645	0.85	+2.0
3,354,806	+		DDA3937_RS14645	0.85	-1.5
3,354,836	+		DDA3937_RS14645	0.86	-1.4
3,354,836	+		DDA3937_RS14645	0.86	+1.1
3,354,836	+		DDA3937_RS14645	0.86	+1.8
3,354,836	+		DDA3937_RS14645	0.86	+0.2
3,354,836	+		DDA3937_RS14645	0.86	-2.1
3,354,837	-		DDA3937_RS14645	0.86	-1.0
3,354,837	-		DDA3937_RS14645	0.86	+0.4
3,354,837	-		DDA3937_RS14645	0.86	+1.6
3,354,886	+		DDA3937_RS14645	0.89	-0.8
3,354,886	+		DDA3937_RS14645	0.89	-0.5
3,354,887	-		DDA3937_RS14645	0.89	-0.4
3,354,887	-		DDA3937_RS14645	0.89	-0.5
3,354,887	-		DDA3937_RS14645	0.89	+0.7
3,354,887	-		DDA3937_RS14645	0.89	-0.8
3,354,887	-		DDA3937_RS14645	0.89	+0.4
3,355,036	+				-0.4
3,355,037	-				-0.6
3,355,084	+				+0.8
3,355,084	+				-0.6
3,355,085	-				-1.7
3,355,085	-				-1.7
3,355,085	-				-0.4
3,355,107	+				+1.8
3,355,108	-				-1.3
3,355,108	-				+2.0
3,355,121	-				-0.3
3,355,121	-				-2.8
3,355,160	+				-2.9
3,355,161	-				+1.7
3,355,165	+				-1.0
3,355,165	+				-0.7
3,355,166	-				+1.6
3,355,166	-				-1.4
3,355,176	+				-0.5
3,355,223	-				-1.0
3,355,336	+				+0.4
3,355,337	-				-0.9
3,355,337	-				+0.2
3,355,449	-		DDA3937_RS14650	0.11	-1.7
3,355,449	-		DDA3937_RS14650	0.11	+2.2
3,355,567	+		DDA3937_RS14650	0.18	+1.4
3,355,600	+		DDA3937_RS14650	0.20	-1.2
3,355,613	-		DDA3937_RS14650	0.20	+0.1
3,355,756	+		DDA3937_RS14650	0.28	+0.6
3,355,756	+		DDA3937_RS14650	0.28	-0.4
3,355,756	+		DDA3937_RS14650	0.28	-1.0
3,355,757	-		DDA3937_RS14650	0.28	-0.5
3,355,766	-		DDA3937_RS14650	0.29	-1.2
3,355,766	-		DDA3937_RS14650	0.29	-2.0
3,355,768	+		DDA3937_RS14650	0.29	-0.8
3,355,768	+		DDA3937_RS14650	0.29	-0.5
3,355,768	+		DDA3937_RS14650	0.29	-0.2
3,355,768	+		DDA3937_RS14650	0.29	-0.3
3,355,768	+		DDA3937_RS14650	0.29	+1.0
3,355,768	+		DDA3937_RS14650	0.29	-0.1
3,355,769	-		DDA3937_RS14650	0.29	+0.2
3,355,825	+		DDA3937_RS14650	0.32	-0.4
3,355,826	-		DDA3937_RS14650	0.32	-1.2
3,356,012	+		DDA3937_RS14650	0.42	-1.3
3,356,084	+		DDA3937_RS14650	0.46	+0.6
3,356,084	+		DDA3937_RS14650	0.46	-0.8
3,356,084	+		DDA3937_RS14650	0.46	-1.6
3,356,084	+		DDA3937_RS14650	0.46	-1.4
3,356,085	-		DDA3937_RS14650	0.46	-0.2
3,356,085	-		DDA3937_RS14650	0.46	-0.6
3,356,085	-		DDA3937_RS14650	0.46	-2.0
3,356,086	+		DDA3937_RS14650	0.46	-1.4
3,356,087	-		DDA3937_RS14650	0.46	-0.7