Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14175

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,244,061	+				-0.8
3,244,147	+				-2.3
3,244,180	+				-2.5
3,244,180	+				-0.5
3,244,180	+				+0.4
3,244,234	-		DDA3937_RS14170	0.15	-0.1
3,244,289	+		DDA3937_RS14170	0.21	+0.7
3,244,289	+		DDA3937_RS14170	0.21	-1.5
3,244,290	-		DDA3937_RS14170	0.21	+0.2
3,244,290	-		DDA3937_RS14170	0.21	-1.7
3,244,290	-		DDA3937_RS14170	0.21	-1.1
3,244,322	+		DDA3937_RS14170	0.25	-0.3
3,244,322	+		DDA3937_RS14170	0.25	-1.7
3,244,322	+		DDA3937_RS14170	0.25	+0.4
3,244,322	+		DDA3937_RS14170	0.25	+0.3
3,244,322	+		DDA3937_RS14170	0.25	-0.2
3,244,322	+		DDA3937_RS14170	0.25	-0.8
3,244,323	-		DDA3937_RS14170	0.25	-1.0
3,244,323	-		DDA3937_RS14170	0.25	-2.4
3,244,323	-		DDA3937_RS14170	0.25	-1.9
3,244,323	-		DDA3937_RS14170	0.25	+0.4
3,244,323	-		DDA3937_RS14170	0.25	-1.7
3,244,323	-		DDA3937_RS14170	0.25	+1.8
3,244,323	-		DDA3937_RS14170	0.25	-0.7
3,244,323	-		DDA3937_RS14170	0.25	+1.1
3,244,323	-		DDA3937_RS14170	0.25	+2.7
3,244,323	-		DDA3937_RS14170	0.25	+1.4
3,244,327	+		DDA3937_RS14170	0.26	-1.6
3,244,327	+				-0.5
3,244,327	+		DDA3937_RS14170	0.26	-1.7
3,244,327	+		DDA3937_RS14170	0.26	-0.5
3,244,327	+		DDA3937_RS14170	0.26	-1.0
3,244,328	-		DDA3937_RS14170	0.26	-0.2
3,244,328	-		DDA3937_RS14170	0.26	-1.8
3,244,328	-		DDA3937_RS14170	0.26	+0.3
3,244,328	-		DDA3937_RS14170	0.26	+1.0
3,244,328	-		DDA3937_RS14170	0.26	+2.2
3,244,328	-		DDA3937_RS14170	0.26	+0.7
3,244,328	-		DDA3937_RS14170	0.26	-0.4
3,244,328	-		DDA3937_RS14170	0.26	-1.1
3,244,328	-		DDA3937_RS14170	0.26	-0.5
3,244,358	+		DDA3937_RS14170	0.29	-0.5
3,244,358	+		DDA3937_RS14170	0.29	+0.4
3,244,359	-		DDA3937_RS14170	0.29	-0.3
3,244,526	+		DDA3937_RS14170	0.48	+1.5
3,244,526	+		DDA3937_RS14170	0.48	-0.3
3,244,526	+		DDA3937_RS14170	0.48	+0.2
3,244,526	+		DDA3937_RS14170	0.48	-1.1
3,244,526	+		DDA3937_RS14170	0.48	-1.1
3,244,527	-		DDA3937_RS14170	0.48	+0.2
3,244,527	-		DDA3937_RS14170	0.48	-1.2
3,244,527	-		DDA3937_RS14170	0.48	-1.5
3,244,698	+		DDA3937_RS14170	0.67	-1.3
3,244,698	+		DDA3937_RS14170	0.67	-2.1
3,244,698	+		DDA3937_RS14170	0.67	-0.4
3,244,699	-		DDA3937_RS14170	0.67	-1.9
3,244,699	-		DDA3937_RS14170	0.67	+0.3
3,244,699	-		DDA3937_RS14170	0.67	+0.1
3,244,803	-		DDA3937_RS14170	0.78	-0.3
3,244,816	-		DDA3937_RS14170	0.80	-0.5
3,244,905	+		DDA3937_RS14170	0.90	-3.0
3,244,977	+				+0.6
3,244,978	-				+0.7
3,244,978	-				-1.1
3,244,999	-				-1.3
3,244,999	-				-1.9
3,245,015	+				+0.2
3,245,016	-				-1.7
3,245,016	-				+1.4
3,245,016	-				-2.4
3,245,048	+				-2.3
3,245,049	-				-1.3
3,245,049	-				-0.7
3,245,049	-				+1.0
3,245,049	-				+0.1
3,245,103	+				+0.4
3,245,103	+				-0.9
3,245,104	-				-1.7
3,245,221	+				+0.6
3,245,223	+				-0.7
3,245,223	+				-0.9
3,245,223	+				-0.7
3,245,223	+				-1.4
3,245,223	+				-1.3
3,245,223	+				-0.6
3,245,223	+				-2.4
3,245,223	+				-1.1
3,245,223	+				-0.5
3,245,224	-				-0.3
3,245,224	-				+0.9
3,245,224	-				-1.0
3,245,224	-				-1.0
3,245,224	-				+1.1
3,245,224	-				-1.6
3,245,224	-				-0.9
3,245,224	-				-0.0
3,245,224	-				-2.3
3,245,224	-				-1.7
3,245,224	-				-2.1
3,245,224	-				-4.5
3,245,224	-				-1.3
3,245,378	+		DDA3937_RS14175	0.12	+0.3
3,245,378	+		DDA3937_RS14175	0.12	-0.3
3,245,378	+		DDA3937_RS14175	0.12	+1.5
3,245,378	+		DDA3937_RS14175	0.12	-1.7
3,245,379	-		DDA3937_RS14175	0.12	-0.2
3,245,379	-		DDA3937_RS14175	0.12	-1.7
3,245,379	-		DDA3937_RS14175	0.12	-0.5
3,245,408	-		DDA3937_RS14175	0.13	+0.1
3,245,420	+		DDA3937_RS14175	0.13	-1.3
3,245,420	+		DDA3937_RS14175	0.13	+0.1
3,245,421	-		DDA3937_RS14175	0.13	-0.5
3,245,421	-		DDA3937_RS14175	0.13	-2.1
3,245,421	-		DDA3937_RS14175	0.13	-1.1
3,245,442	+		DDA3937_RS14175	0.14	+0.1
3,245,458	-		DDA3937_RS14175	0.15	-0.5
3,245,729	+		DDA3937_RS14175	0.23	+0.7
3,245,730	-		DDA3937_RS14175	0.23	-0.4
3,245,730	-		DDA3937_RS14175	0.23	-0.9
3,245,730	-		DDA3937_RS14175	0.23	+0.3
3,245,908	+		DDA3937_RS14175	0.29	-0.4
3,245,909	-		DDA3937_RS14175	0.29	-1.5
3,245,940	+		DDA3937_RS14175	0.30	-0.2
3,245,941	-		DDA3937_RS14175	0.30	-0.1
3,246,021	-		DDA3937_RS14175	0.33	+2.5
3,246,021	-		DDA3937_RS14175	0.33	-0.9
3,246,074	+		DDA3937_RS14175	0.35	+0.4
3,246,074	+		DDA3937_RS14175	0.35	-2.4
3,246,074	+		DDA3937_RS14175	0.35	+0.1
3,246,075	-		DDA3937_RS14175	0.35	+0.2
3,246,075	-				+1.1
3,246,075	-		DDA3937_RS14175	0.35	-0.1
3,246,075	-		DDA3937_RS14175	0.35	-0.5
3,246,155	+		DDA3937_RS14175	0.37	+3.1
3,246,155	+		DDA3937_RS14175	0.37	+0.1
3,246,155	+		DDA3937_RS14175	0.37	+0.2
3,246,232	+		DDA3937_RS14175	0.40	-2.5
3,246,232	+		DDA3937_RS14175	0.40	-1.5
3,246,321	+		DDA3937_RS14175	0.43	-0.5
3,246,333	-				+0.1
3,246,409	-		DDA3937_RS14175	0.46	-1.7
3,246,410	+		DDA3937_RS14175	0.46	-1.5
3,246,410	+		DDA3937_RS14175	0.46	-3.1
3,246,411	-		DDA3937_RS14175	0.46	-1.7
3,246,411	-		DDA3937_RS14175	0.46	-0.5
3,246,411	-		DDA3937_RS14175	0.46	-1.8
3,246,411	-		DDA3937_RS14175	0.46	+1.3
3,246,461	+				+3.7
3,246,461	+		DDA3937_RS14175	0.47	-0.1
3,246,461	+		DDA3937_RS14175	0.47	-0.9
3,246,462	-		DDA3937_RS14175	0.47	-0.9
3,246,462	-		DDA3937_RS14175	0.47	-0.9
3,246,519	+		DDA3937_RS14175	0.49	-0.5
3,246,520	-		DDA3937_RS14175	0.49	-0.1
3,246,575	+		DDA3937_RS14175	0.51	+0.7
3,246,576	-		DDA3937_RS14175	0.51	-1.4
3,246,576	-		DDA3937_RS14175	0.51	-0.2
3,246,576	-		DDA3937_RS14175	0.51	-1.2
3,246,576	-		DDA3937_RS14175	0.51	+0.1
3,246,623	+		DDA3937_RS14175	0.53	-1.2
3,246,623	+		DDA3937_RS14175	0.53	-1.2
3,246,623	+		DDA3937_RS14175	0.53	+1.5
3,246,623	+		DDA3937_RS14175	0.53	+0.6
3,246,624	-		DDA3937_RS14175	0.53	-1.2
3,246,624	-		DDA3937_RS14175	0.53	-1.0
3,246,624	-		DDA3937_RS14175	0.53	+0.9
3,246,624	-		DDA3937_RS14175	0.53	+1.3
3,246,663	+		DDA3937_RS14175	0.54	-0.0
3,246,663	+		DDA3937_RS14175	0.54	-1.9
3,246,663	+		DDA3937_RS14175	0.54	-0.9
3,246,664	-		DDA3937_RS14175	0.54	-2.5
3,246,664	-				+2.4
3,246,664	-		DDA3937_RS14175	0.54	-1.5
3,246,664	-		DDA3937_RS14175	0.54	+0.7
3,246,664	-		DDA3937_RS14175	0.54	-0.1
3,246,664	-		DDA3937_RS14175	0.54	+0.3
3,246,665	+		DDA3937_RS14175	0.54	-0.4
3,246,665	+		DDA3937_RS14175	0.54	+1.5
3,246,666	-				+4.2
3,246,666	-		DDA3937_RS14175	0.54	+2.3
3,246,666	-		DDA3937_RS14175	0.54	+0.3
3,246,704	+		DDA3937_RS14175	0.55	-0.7
3,246,705	-		DDA3937_RS14175	0.55	-0.6
3,246,842	+				+5.3
3,246,842	+		DDA3937_RS14175	0.60	+0.7
3,246,842	+		DDA3937_RS14175	0.60	-1.1
3,246,842	+		DDA3937_RS14175	0.60	+0.0
3,246,842	+		DDA3937_RS14175	0.60	-1.6
3,246,843	-		DDA3937_RS14175	0.60	-0.2
3,246,843	-		DDA3937_RS14175	0.60	+1.8
3,246,846	+		DDA3937_RS14175	0.60	-0.0
3,246,846	+		DDA3937_RS14175	0.60	-0.9
3,246,846	+		DDA3937_RS14175	0.60	+0.8
3,246,846	+		DDA3937_RS14175	0.60	-0.4
3,246,846	+		DDA3937_RS14175	0.60	+1.2
3,246,846	+				+0.1
3,246,846	+		DDA3937_RS14175	0.60	+0.7
3,246,846	+		DDA3937_RS14175	0.60	+0.3
3,246,847	-		DDA3937_RS14175	0.60	-0.5
3,246,847	-		DDA3937_RS14175	0.60	-1.7
3,246,847	-		DDA3937_RS14175	0.60	-0.8
3,246,847	-		DDA3937_RS14175	0.60	+1.8
3,246,847	-		DDA3937_RS14175	0.60	+1.4
3,246,897	+		DDA3937_RS14175	0.62	-0.5
3,246,898	-		DDA3937_RS14175	0.62	-1.9
3,246,953	+		DDA3937_RS14175	0.64	-1.1
3,247,067	+		DDA3937_RS14175	0.67	-1.9
3,247,068	-				+0.8
3,247,068	-		DDA3937_RS14175	0.67	-0.5
3,247,068	-		DDA3937_RS14175	0.67	-1.5
3,247,068	-		DDA3937_RS14175	0.67	+2.1
3,247,068	-		DDA3937_RS14175	0.67	-0.9
3,247,088	+		DDA3937_RS14175	0.68	+0.1
3,247,149	+		DDA3937_RS14175	0.70	+1.0
3,247,149	+		DDA3937_RS14175	0.70	-1.1
3,247,151	+		DDA3937_RS14175	0.70	-0.2
3,247,151	+		DDA3937_RS14175	0.70	+0.1
3,247,152	-		DDA3937_RS14175	0.70	+0.2
3,247,152	-		DDA3937_RS14175	0.70	-1.7
3,247,152	-		DDA3937_RS14175	0.70	-1.9
3,247,152	-		DDA3937_RS14175	0.70	-0.6
3,247,152	-		DDA3937_RS14175	0.70	-1.8
3,247,163	+		DDA3937_RS14175	0.70	-1.9
3,247,163	+				+0.1
3,247,164	-		DDA3937_RS14175	0.70	-1.0
3,247,197	-		DDA3937_RS14175	0.72	-0.8
3,247,250	+		DDA3937_RS14175	0.73	-0.5
3,247,250	+		DDA3937_RS14175	0.73	+0.7
3,247,250	+		DDA3937_RS14175	0.73	+0.1
3,247,250	+		DDA3937_RS14175	0.73	+4.1
3,247,250	+		DDA3937_RS14175	0.73	+0.7
3,247,250	+		DDA3937_RS14175	0.73	+1.6
3,247,250	+		DDA3937_RS14175	0.73	+0.7
3,247,251	-		DDA3937_RS14175	0.73	-2.7
3,247,251	-		DDA3937_RS14175	0.73	-1.4
3,247,251	-		DDA3937_RS14175	0.73	-1.6
3,247,251	-		DDA3937_RS14175	0.73	-1.7
3,247,251	-				+2.1
3,247,251	-		DDA3937_RS14175	0.73	-0.0
3,247,251	-		DDA3937_RS14175	0.73	-0.9
3,247,251	-		DDA3937_RS14175	0.73	+4.3
3,247,838	+				-2.2
3,247,838	+				-2.1
3,247,838	+				-0.4
3,247,839	-				-1.2
3,247,880	+				-1.5
3,247,880	+				-0.0
3,247,880	+				-1.9
3,247,880	+				-1.2
3,247,881	-				+0.3
3,247,881	-				-1.2
3,247,910	+				-2.1
3,247,910	+				-0.7
3,247,910	+				-0.1
3,247,910	+				+0.4
3,247,910	+				-0.7
3,247,911	-				+0.7
3,247,911	-				+0.1
3,247,911	-				-1.2
3,247,945	+				-0.4
3,247,945	+				-2.5
3,247,950	+				-0.4
3,247,950	+				+0.8
3,247,950	+				+0.6
3,247,950	+				+0.1
3,247,950	+				-0.5
3,247,951	-				-1.2
3,247,952	+				+1.0
3,248,032	+				-2.4
3,248,033	-				-2.0
3,248,033	-				-0.2
3,248,033	-				+2.2
3,248,096	+				-1.1
3,248,096	+				+2.0
3,248,096	+				-0.1
3,248,096	+				-2.2
3,248,096	+				+1.4
3,248,096	+				-0.5
3,248,096	+				-1.2
3,248,097	-				+1.2
3,248,097	-				-0.1
3,248,097	-				-1.9
3,248,097	-				-1.4
3,248,099	-				-0.5
3,248,107	+				+2.7
3,248,107	+				+0.4
3,248,148	+				-0.9
3,248,153	-				-0.2
3,248,158	-				-0.6
3,248,159	+				-0.0
3,248,159	+				-2.2
3,248,159	+				+0.1
3,248,159	+				-1.0
3,248,160	-				-1.9
3,248,160	-				+0.8
3,248,160	-				-2.1
3,248,160	-				-1.7
3,248,160	-				-0.7
3,248,166	+				-0.5
3,248,166	+				-0.2
3,248,167	-				+0.5
3,248,167	-				-0.3
3,248,167	-				+0.6
3,248,167	-				-1.5
3,248,167	-				+0.2
3,248,170	+				-2.1
3,248,170	+				-2.5
3,248,171	-				-0.9
3,248,171	-				-2.9
3,248,236	+				-1.7
3,248,236	+				-1.7
3,248,236	+				-2.1
3,248,236	+				-0.7
3,248,237	-				-0.5
3,248,237	-				-1.5
3,248,237	-				-2.0
3,248,240	+				+0.4
3,248,240	+				-0.4
3,248,240	+				-1.7
3,248,240	+				+1.1
3,248,240	+				+0.1
3,248,240	+				-0.3
3,248,240	+				+1.2
3,248,240	+				-0.8
3,248,240	+				-1.7
3,248,240	+				-1.0
3,248,241	-				-0.5
3,248,241	-				-2.0
3,248,241	-				-0.9
3,248,241	-				+0.1
3,248,241	-				-2.5
3,248,241	-				+0.7
3,248,241	-				+1.4
3,248,241	-				-2.4
3,248,241	-				+0.5
3,248,241	-				-2.1
3,248,241	-				-0.1
3,248,244	-				-0.8
3,248,244	-				-1.9
3,248,271	+				-2.0
3,248,276	-				-0.8
3,248,308	+				-0.9
3,248,309	-				-0.2
3,248,310	+				-0.2
3,248,311	-				-1.3
3,248,311	-				+0.2
3,248,311	-				-2.5
3,248,311	-				+1.7
3,248,311	-				-0.5
3,248,327	-				-2.2
3,248,332	+				+0.8
3,248,332	+				-0.3
3,248,333	-				-1.4
3,248,333	-				+1.8
3,248,366	-				-1.5
3,248,375	+				+0.4
3,248,376	-				-0.1
3,248,376	-				-1.9
3,248,440	-				-1.4
3,248,440	-				-0.1
3,248,454	+				+0.3
3,248,515	-				+0.2
3,248,558	+				-0.5
3,248,684	+				-2.0
3,248,744	-				-1.4
3,248,791	+				-0.9
3,248,791	+				+0.2
3,248,800	+				+0.5
3,248,802	+				-0.0
3,248,802	+				+1.0
3,248,802	+				+1.3
3,248,802	+				-2.8
3,248,802	+				-0.1
3,248,804	+				+0.8
3,248,804	+				+0.0
3,248,804	+				-1.8
3,248,804	+				+1.8
3,249,030	+		DDA3937_RS14180	0.12	-0.9
3,249,030	+		DDA3937_RS14180	0.12	+0.7
3,249,031	-		DDA3937_RS14180	0.12	-1.1
3,249,043	+		DDA3937_RS14180	0.13	-0.7
3,249,043	+		DDA3937_RS14180	0.13	-0.4
3,249,043	+		DDA3937_RS14180	0.13	-0.7
3,249,043	+		DDA3937_RS14180	0.13	+0.5
3,249,044	-		DDA3937_RS14180	0.13	-0.3
3,249,044	-		DDA3937_RS14180	0.13	-1.2
3,249,044	-		DDA3937_RS14180	0.13	+0.4
3,249,044	-		DDA3937_RS14180	0.13	+3.4
3,249,044	-		DDA3937_RS14180	0.13	-0.3
3,249,044	-		DDA3937_RS14180	0.13	+1.6
3,249,044	-		DDA3937_RS14180	0.13	-0.5