Strain Fitness in Dickeya dadantii 3937

Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13720

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
				remove
3,123,344	+			-1.1
3,123,345	-			+0.8
3,123,345	-			-1.8
3,123,486	+	DDA3937_RS13710	0.63	-0.3
3,123,486	+	DDA3937_RS13710	0.63	-0.3
3,123,487	-	DDA3937_RS13710	0.63	-0.6
3,123,487	-	DDA3937_RS13710	0.63	-2.2
3,123,539	+	DDA3937_RS13710	0.86	+0.5
3,123,559	-			-1.5
3,123,680	+			-2.6
3,123,681	-			-0.6
3,123,712	-			-0.6
3,123,726	-			-0.6
3,123,970	-			-0.9
3,123,991	+			-0.6
3,123,992	-			+1.3
3,124,066	+			-2.8
3,124,072	-			-0.5
3,124,077	+			-1.8
3,124,129	+			-0.6
3,124,154	+			-1.2
3,124,172	+			-0.0
3,124,198	+			-1.4
3,124,199	-			-0.5
3,124,206	+			+0.8
3,124,207	-			-1.8
3,124,210	-			-1.6
3,124,210	-			-3.2
3,124,210	-			-0.7
3,124,222	-			-0.9
3,124,229	+			+0.5
3,124,229	+			-0.3
3,124,229	+			-0.5
3,124,230	-			-2.5
3,124,230	-			+0.1
3,124,230	-			-0.1
3,124,231	+			-1.7
3,124,301	+			+1.8
3,124,302	-			+0.6
3,124,302	-			+0.2
3,124,302	-			+0.4
3,124,365	+			-1.1
3,124,378	+			-1.7
3,124,379	-			-0.8
3,124,386	+			-0.8
3,124,465	+	DDA3937_RS13720	0.11	+0.9
3,124,465	+	DDA3937_RS13720	0.11	-2.6
3,124,465	+	DDA3937_RS13720	0.11	+1.6
3,124,465	+	DDA3937_RS13720	0.11	+0.7
3,124,466	-	DDA3937_RS13720	0.12	-1.2
3,124,467	+	DDA3937_RS13720	0.12	+4.7
3,124,475	+	DDA3937_RS13720	0.12	+0.4
3,124,475	+	DDA3937_RS13720	0.12	-0.1
3,124,476	-	DDA3937_RS13720	0.12	+0.6
3,124,477	+	DDA3937_RS13720	0.12	-0.1
3,124,477	+	DDA3937_RS13720	0.12	+0.2
3,124,477	+	DDA3937_RS13720	0.12	+1.6
3,124,477	+	DDA3937_RS13720	0.12	-1.8
3,124,477	+	DDA3937_RS13720	0.12	-0.3
3,124,477	+	DDA3937_RS13720	0.12	-1.0
3,124,477	+	DDA3937_RS13720	0.12	-0.9
3,124,478	-	DDA3937_RS13720	0.12	-0.8
3,124,478	-	DDA3937_RS13720	0.12	-1.6
3,124,544	-	DDA3937_RS13720	0.17	+1.2
3,124,544	-	DDA3937_RS13720	0.17	+1.0
3,124,544	-	DDA3937_RS13720	0.17	+1.0
3,124,544	-	DDA3937_RS13720	0.17	+0.1
3,124,547	+	DDA3937_RS13720	0.17	-1.8
3,124,548	-	DDA3937_RS13720	0.17	-1.8
3,124,548	-	DDA3937_RS13720	0.17	-0.6
3,124,616	+	DDA3937_RS13720	0.22	+1.4
3,124,617	-	DDA3937_RS13720	0.22	-2.5
3,124,617	-	DDA3937_RS13720	0.22	+1.3
3,124,617	-	DDA3937_RS13720	0.22	-0.3
3,124,671	-	DDA3937_RS13720	0.26	-0.2
3,124,720	-	DDA3937_RS13720	0.30	-0.9
3,124,720	-	DDA3937_RS13720	0.30	-0.5
3,124,728	+	DDA3937_RS13720	0.30	-2.0
3,124,729	-	DDA3937_RS13720	0.30	-0.7
3,124,729	-	DDA3937_RS13720	0.30	-1.2
3,124,729	-	DDA3937_RS13720	0.30	-2.2
3,124,744	-	DDA3937_RS13720	0.31	-1.3
3,124,744	-	DDA3937_RS13720	0.31	-0.9
3,124,847	-	DDA3937_RS13720	0.39	-1.7
3,124,859	-	DDA3937_RS13720	0.40	-2.6
3,124,859	-	DDA3937_RS13720	0.40	-1.2
3,124,891	+	DDA3937_RS13720	0.42	-1.3
3,124,892	-	DDA3937_RS13720	0.42	-1.8
3,124,956	+	DDA3937_RS13720	0.46	-2.0
3,124,956	+	DDA3937_RS13720	0.46	+2.0
3,124,957	-	DDA3937_RS13720	0.47	-0.8
3,125,068	+	DDA3937_RS13720	0.54	-1.0
3,125,068	+	DDA3937_RS13720	0.54	-0.3
3,125,075	+	DDA3937_RS13720	0.55	-1.1
3,125,075	+	DDA3937_RS13720	0.55	+1.1
3,125,076	-	DDA3937_RS13720	0.55	-1.3
3,125,076	-	DDA3937_RS13720	0.55	-1.0
3,125,098	+	DDA3937_RS13720	0.57	-0.6
3,125,098	+	DDA3937_RS13720	0.57	-0.8
3,125,098	+	DDA3937_RS13720	0.57	+0.1
3,125,098	+	DDA3937_RS13720	0.57	-0.4
3,125,098	+	DDA3937_RS13720	0.57	-3.2
3,125,098	+	DDA3937_RS13720	0.57	+0.2
3,125,098	+	DDA3937_RS13720	0.57	-0.6
3,125,099	-	DDA3937_RS13720	0.57	+1.8
3,125,384	+	DDA3937_RS13720	0.77	-1.3
3,125,384	+	DDA3937_RS13720	0.77	-1.3
3,125,388	+	DDA3937_RS13720	0.77	-2.7
3,125,388	+	DDA3937_RS13720	0.77	-0.3
3,125,389	-	DDA3937_RS13720	0.77	-0.3
3,125,389	-	DDA3937_RS13720	0.77	-0.6
3,125,461	+	DDA3937_RS13720	0.82	-2.7
3,125,462	-	DDA3937_RS13720	0.82	-0.6
3,125,462	-	DDA3937_RS13720	0.82	+0.2
3,125,477	+	DDA3937_RS13720	0.84	-1.9
3,125,477	+	DDA3937_RS13720	0.84	-0.3
3,125,477	+	DDA3937_RS13720	0.84	+0.5
3,125,486	+	DDA3937_RS13720	0.84	-0.3
3,125,487	-	DDA3937_RS13720	0.84	-2.3
3,125,487	-	DDA3937_RS13720	0.84	-0.0
3,125,526	-	DDA3937_RS13720	0.87	-1.9
3,125,544	+	DDA3937_RS13720	0.88	-0.4
3,125,544	+	DDA3937_RS13720	0.88	-0.4
3,125,545	-	DDA3937_RS13720	0.88	+1.0
3,125,545	-	DDA3937_RS13720	0.88	-0.7
3,125,545	-	DDA3937_RS13720	0.88	-0.0
3,125,547	+	DDA3937_RS13720	0.89	+1.0
3,125,547	+	DDA3937_RS13720	0.89	-0.0
3,125,548	-	DDA3937_RS13720	0.89	-1.3
3,125,548	-	DDA3937_RS13720	0.89	-1.6
3,125,559	+	DDA3937_RS13720	0.89	-1.4
3,125,560	-	DDA3937_RS13720	0.89	-0.3
3,125,589	+			-1.5
3,125,589	+			-0.5
3,125,589	+			+2.5
3,125,589	+			+0.2
3,125,590	-			-1.1
3,125,590	-			+0.4
3,125,632	+			+3.6
3,125,714	-			-0.0
3,125,733	+			-0.6
3,125,734	-			-0.7
3,125,744	-			+0.4
3,125,744	-			-0.3
3,125,744	-			+2.1
3,125,744	-			+0.3
3,125,757	+			-2.3
3,125,757	+			+0.5
3,125,758	-			-2.3
3,125,758	-			-1.3
3,125,758	-			-1.8
3,125,775	+			-0.3
3,125,795	+			+0.6
3,126,028	-			+1.5
3,126,064	+			-0.3
3,126,068	+			+3.3
3,126,068	+			+1.0
3,126,068	+			+0.3
3,126,069	-			+0.2
3,126,069	-			-1.5
3,126,074	+			+0.7
3,126,075	-			-0.5
3,126,078	+			-0.0
3,126,078	+			-1.6
3,126,079	-			-3.0
3,126,079	-			-0.3
3,126,082	-			-3.4
3,126,082	-			-0.6
3,126,146	+			-1.0
3,126,156	+			-0.3
3,126,189	+			+0.5
3,126,189	+			-0.2
3,126,190	-			+2.4
3,126,190	-			-1.6
3,126,190	-			-1.2
3,126,192	+			+0.8
3,126,192	+			-1.8
3,126,264	-			-1.3
3,126,264	-			-0.5
3,126,331	-			-0.0
3,126,331	-			-1.8
3,126,348	+			-0.0
3,126,411	+			+0.3
3,126,427	+			-0.2
3,126,427	+			-1.4
3,126,476	+	DDA3937_RS13730	0.55	+1.1
3,126,476	+	DDA3937_RS13730	0.55	+0.9
3,126,542	+			-1.3
3,126,565	+			-1.5
3,126,575	+			-0.5
3,126,679	+			-1.6
3,126,702	+			+0.8

Or see this region's nucleotide sequence