Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13685

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,116,758	+		DDA3937_RS13680	0.71	-0.6
3,116,759	-		DDA3937_RS13680	0.71	-0.6
3,116,858	+		DDA3937_RS13680	0.74	-1.0
3,116,859	-		DDA3937_RS13680	0.74	+1.5
3,116,859	-		DDA3937_RS13680	0.74	-1.0
3,117,004	+		DDA3937_RS13680	0.78	-2.7
3,117,004	+		DDA3937_RS13680	0.78	-1.4
3,117,005	-		DDA3937_RS13680	0.78	-0.2
3,117,005	-		DDA3937_RS13680	0.78	-0.9
3,117,006	+		DDA3937_RS13680	0.78	-1.4
3,117,006	+		DDA3937_RS13680	0.78	-0.6
3,117,007	-		DDA3937_RS13680	0.78	+1.0
3,117,019	+		DDA3937_RS13680	0.79	+1.2
3,117,052	+		DDA3937_RS13680	0.80	+1.5
3,117,052	+		DDA3937_RS13680	0.80	-0.6
3,117,052	+		DDA3937_RS13680	0.80	-1.6
3,117,053	-		DDA3937_RS13680	0.80	+0.4
3,117,053	-		DDA3937_RS13680	0.80	-0.6
3,117,053	-		DDA3937_RS13680	0.80	-0.6
3,117,053	-		DDA3937_RS13680	0.80	-1.0
3,117,053	-		DDA3937_RS13680	0.80	-0.4
3,117,056	+		DDA3937_RS13680	0.80	-2.4
3,117,056	+		DDA3937_RS13680	0.80	-1.3
3,117,057	-		DDA3937_RS13680	0.80	-1.5
3,117,057	-		DDA3937_RS13680	0.80	-1.0
3,117,057	-		DDA3937_RS13680	0.80	-0.3
3,117,096	+		DDA3937_RS13680	0.81	+0.7
3,117,096	+		DDA3937_RS13680	0.81	+0.2
3,117,096	+				+1.7
3,117,096	+		DDA3937_RS13680	0.81	-1.0
3,117,096	+		DDA3937_RS13680	0.81	-0.0
3,117,096	+		DDA3937_RS13680	0.81	-0.0
3,117,096	+		DDA3937_RS13680	0.81	+0.6
3,117,097	-		DDA3937_RS13680	0.81	+1.1
3,117,097	-		DDA3937_RS13680	0.81	-0.5
3,117,097	-		DDA3937_RS13680	0.81	-0.8
3,117,097	-		DDA3937_RS13680	0.81	-0.0
3,117,097	-				-1.4
3,117,097	-		DDA3937_RS13680	0.81	-0.8
3,117,097	-		DDA3937_RS13680	0.81	+1.6
3,117,109	+		DDA3937_RS13680	0.81	-0.6
3,117,109	+		DDA3937_RS13680	0.81	-0.6
3,117,110	-		DDA3937_RS13680	0.82	+2.2
3,117,117	+		DDA3937_RS13680	0.82	-1.0
3,117,117	+		DDA3937_RS13680	0.82	-0.1
3,117,117	+		DDA3937_RS13680	0.82	-0.1
3,117,117	+		DDA3937_RS13680	0.82	+0.8
3,117,118	-		DDA3937_RS13680	0.82	-1.4
3,117,174	+		DDA3937_RS13680	0.83	+0.8
3,117,261	-		DDA3937_RS13680	0.86	-0.5
3,117,309	+		DDA3937_RS13680	0.87	+1.5
3,117,337	+		DDA3937_RS13680	0.88	-1.6
3,117,338	-		DDA3937_RS13680	0.88	-1.4
3,117,395	+		DDA3937_RS13680	0.90	-0.2
3,117,395	+		DDA3937_RS13680	0.90	+0.2
3,117,395	+		DDA3937_RS13680	0.90	+1.6
3,117,395	+		DDA3937_RS13680	0.90	+0.2
3,117,395	+				+0.4
3,117,395	+		DDA3937_RS13680	0.90	-0.8
3,117,395	+		DDA3937_RS13680	0.90	-0.8
3,117,396	-				-2.2
3,117,396	-				-0.1
3,117,396	-				-1.8
3,117,396	-				-0.8
3,117,396	-				+0.3
3,117,396	-				+0.2
3,117,396	-				-0.6
3,117,431	+				-0.9
3,117,440	+				-0.8
3,117,441	+				+2.5
3,117,442	-				+0.0
3,117,442	-				+2.6
3,117,466	+				+0.3
3,117,496	+				-0.8
3,117,496	+				-2.0
3,117,496	+				+1.9
3,117,497	-				-2.9
3,117,497	-				-1.7
3,117,542	+				+0.8
3,117,542	+				+0.4
3,117,542	+				-0.0
3,117,542	+				-1.8
3,117,543	-				-0.8
3,117,543	-				+1.0
3,117,543	-				-0.8
3,117,668	+				-0.3
3,117,773	+				-1.8
3,117,773	+				-2.8
3,117,774	-				-2.7
3,117,801	+				+0.3
3,117,801	+				-0.0
3,117,801	+				+1.0
3,117,802	-				-0.7
3,117,825	+				+0.3
3,117,825	+				-0.3
3,117,825	+				+1.0
3,117,825	+				+0.6
3,117,907	+		DDA3937_RS13685	0.15	-1.0
3,117,907	+		DDA3937_RS13685	0.15	-2.5
3,117,907	+		DDA3937_RS13685	0.15	+0.2
3,117,907	+		DDA3937_RS13685	0.15	-2.2
3,117,907	+		DDA3937_RS13685	0.15	+0.4
3,117,907	+		DDA3937_RS13685	0.15	+0.1
3,117,907	+		DDA3937_RS13685	0.15	+0.6
3,117,907	+		DDA3937_RS13685	0.15	+0.1
3,117,907	+		DDA3937_RS13685	0.15	-1.4
3,117,907	+		DDA3937_RS13685	0.15	-1.8
3,117,907	+		DDA3937_RS13685	0.15	-0.6
3,117,907	+				+1.4
3,117,908	-		DDA3937_RS13685	0.15	-3.7
3,117,908	-		DDA3937_RS13685	0.15	-0.3
3,117,908	-		DDA3937_RS13685	0.15	+1.5
3,117,908	-		DDA3937_RS13685	0.15	-1.0
3,117,908	-		DDA3937_RS13685	0.15	-2.0
3,117,908	-		DDA3937_RS13685	0.15	-3.0
3,117,908	-		DDA3937_RS13685	0.15	-0.4
3,117,908	-		DDA3937_RS13685	0.15	-0.8
3,117,908	-		DDA3937_RS13685	0.15	-1.3
3,117,908	-		DDA3937_RS13685	0.15	-0.8
3,117,908	-		DDA3937_RS13685	0.15	-0.2
3,117,908	-		DDA3937_RS13685	0.15	-1.2
3,117,908	-		DDA3937_RS13685	0.15	-0.4
3,117,908	-		DDA3937_RS13685	0.15	-0.4
3,117,908	-		DDA3937_RS13685	0.15	-1.4
3,117,908	-		DDA3937_RS13685	0.15	-0.9
3,117,909	+		DDA3937_RS13685	0.15	+0.8
3,117,909	+		DDA3937_RS13685	0.15	-0.6
3,117,909	+		DDA3937_RS13685	0.15	+1.2
3,117,909	+		DDA3937_RS13685	0.15	-1.1
3,117,910	-		DDA3937_RS13685	0.15	-0.2
3,117,948	-		DDA3937_RS13685	0.18	+0.6
3,117,948	-		DDA3937_RS13685	0.18	-1.7
3,117,988	-		DDA3937_RS13685	0.22	+0.6
3,118,215	-		DDA3937_RS13685	0.41	+0.3
3,118,271	+		DDA3937_RS13685	0.45	-1.9
3,118,272	-		DDA3937_RS13685	0.45	-1.5
3,118,308	+				+2.6
3,118,309	-		DDA3937_RS13685	0.48	+1.8
3,118,347	-		DDA3937_RS13685	0.52	+1.0
3,118,372	-		DDA3937_RS13685	0.54	-0.5
3,118,372	-		DDA3937_RS13685	0.54	+0.8
3,118,390	+		DDA3937_RS13685	0.55	-0.5
3,118,391	-		DDA3937_RS13685	0.55	-1.7
3,118,560	-		DDA3937_RS13685	0.70	-1.5
3,118,589	+		DDA3937_RS13685	0.72	+0.0
3,118,590	-		DDA3937_RS13685	0.72	-1.0
3,118,611	+		DDA3937_RS13685	0.74	-1.6
3,118,612	-		DDA3937_RS13685	0.74	+0.6
3,118,641	+		DDA3937_RS13685	0.76	-0.1
3,118,642	-		DDA3937_RS13685	0.76	+0.3
3,118,642	-		DDA3937_RS13685	0.76	-1.6
3,118,642	-		DDA3937_RS13685	0.76	-0.4
3,118,670	+		DDA3937_RS13685	0.79	-2.4
3,118,670	+		DDA3937_RS13685	0.79	-1.4
3,118,671	-		DDA3937_RS13685	0.79	+2.3
3,118,671	-		DDA3937_RS13685	0.79	-0.6
3,118,671	-		DDA3937_RS13685	0.79	-0.5
3,118,671	-		DDA3937_RS13685	0.79	-3.2
3,118,746	-		DDA3937_RS13685	0.85	-0.0
3,118,746	-		DDA3937_RS13685	0.85	+0.6
3,118,769	+		DDA3937_RS13685	0.87	+1.7
3,118,770	-		DDA3937_RS13685	0.87	-0.6
3,118,873	+				-0.0
3,118,874	-				-1.6
3,118,874	-				+1.0
3,118,874	-				-0.0
3,118,874	-				+0.8
3,118,874	-				+0.2
3,118,921	+				+0.4
3,118,963	+				-0.4
3,118,963	+				-1.5
3,118,963	+				-1.0
3,118,963	+				-1.0
3,118,964	-				-0.6
3,118,964	-				+0.2
3,118,964	-				-0.7
3,118,964	-				-1.4
3,118,994	+				-1.2
3,118,995	-				-0.4
3,118,995	-				-1.0
3,119,062	+				+0.4
3,119,062	+				-1.6
3,119,062	+				-0.6
3,119,062	+				-0.4
3,119,062	+				-2.0
3,119,063	-				+1.0
3,119,063	-				+0.6
3,119,063	-				-1.8
3,119,063	-				-0.8
3,119,063	-				-1.0
3,119,063	-				+0.9
3,119,090	+				+1.0
3,119,113	+				-2.8
3,119,113	+				-0.4
3,119,113	+				-2.0
3,119,114	-				-0.2
3,119,114	-				-0.4
3,119,264	+				+1.0
3,119,264	+				-0.1
3,119,264	+				-1.5
3,119,264	+				-1.8
3,119,265	-				-0.9
3,119,265	-				-0.3
3,119,291	+				-0.4
3,119,292	-				+1.6
3,119,294	-				+0.4
3,119,358	-				-0.5
3,119,378	-				-1.7
3,119,378	-				-1.5
3,119,378	-				+2.0
3,119,378	-				-0.2
3,119,378	-				+0.6
3,119,533	+				+0.5
3,119,534	-				-0.6
3,119,537	+				-0.4
3,119,538	-				-1.6
3,119,538	-				+0.4
3,119,715	-		DDA3937_RS13695	0.20	-0.0