Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11045

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,491,278	+		DDA3937_RS11040	0.49	+0.5
2,491,394	-		DDA3937_RS11040	0.59	-1.5
2,491,424	+		DDA3937_RS11040	0.61	-0.4
2,491,425	-		DDA3937_RS11040	0.61	+0.7
2,491,425	-		DDA3937_RS11040	0.61	+0.6
2,491,431	-				-1.1
2,491,435	+		DDA3937_RS11040	0.62	-0.0
2,491,452	-		DDA3937_RS11040	0.63	+3.9
2,491,492	+		DDA3937_RS11040	0.67	-2.0
2,491,492	+		DDA3937_RS11040	0.67	+0.4
2,491,501	+		DDA3937_RS11040	0.67	+0.3
2,491,554	-		DDA3937_RS11040	0.71	-3.4
2,491,554	-		DDA3937_RS11040	0.71	-1.1
2,491,555	+		DDA3937_RS11040	0.72	+0.9
2,491,555	+		DDA3937_RS11040	0.72	+1.0
2,491,555	+		DDA3937_RS11040	0.72	+2.6
2,491,584	+		DDA3937_RS11040	0.74	+0.9
2,491,584	+		DDA3937_RS11040	0.74	-2.4
2,491,630	-		DDA3937_RS11040	0.78	-2.3
2,491,631	+		DDA3937_RS11040	0.78	+0.1
2,491,713	-		DDA3937_RS11040	0.84	-2.5
2,491,713	-		DDA3937_RS11040	0.84	-0.4
2,491,716	-		DDA3937_RS11040	0.85	-0.7
2,491,716	-		DDA3937_RS11040	0.85	+0.9
2,491,823	-				-1.5
2,491,907	+				+0.1
2,491,908	-				+0.4
2,491,924	-				+0.7
2,491,984	+				-1.0
2,491,984	+				-0.1
2,492,004	+				-1.1
2,492,027	+				+2.7
2,492,097	+				-0.1
2,492,170	-				+0.6
2,492,221	+				-0.7
2,492,278	+				+0.5
2,492,278	+				-2.1
2,492,370	+				-1.5
2,492,370	+				+0.3
2,492,371	-				-1.5
2,492,371	-				+1.1
2,492,371	-				+0.0
2,492,374	+				-0.1
2,492,374	+				+0.6
2,492,374	+				+0.7
2,492,374	+				-0.7
2,492,375	-				-0.7
2,492,375	-				+1.9
2,492,375	-				+1.7
2,492,375	-				-1.5
2,492,532	+		DDA3937_RS11045	0.19	-1.3
2,492,568	-		DDA3937_RS11045	0.21	+1.1
2,492,568	-		DDA3937_RS11045	0.21	-1.5
2,492,568	-		DDA3937_RS11045	0.21	-0.6
2,492,675	+		DDA3937_RS11045	0.29	-0.5
2,492,675	+		DDA3937_RS11045	0.29	-1.5
2,492,676	-		DDA3937_RS11045	0.29	+0.1
2,492,676	-		DDA3937_RS11045	0.29	+0.3
2,492,704	+		DDA3937_RS11045	0.31	-1.3
2,492,704	+		DDA3937_RS11045	0.31	-2.1
2,492,705	-		DDA3937_RS11045	0.31	+4.0
2,492,708	+		DDA3937_RS11045	0.31	-2.3
2,492,709	-		DDA3937_RS11045	0.31	-1.5
2,492,878	+		DDA3937_RS11045	0.44	-0.5
2,492,878	+		DDA3937_RS11045	0.44	+0.2
2,492,878	+		DDA3937_RS11045	0.44	-0.0
2,492,878	+		DDA3937_RS11045	0.44	+0.5
2,492,878	+		DDA3937_RS11045	0.44	-2.4
2,492,878	+		DDA3937_RS11045	0.44	-1.1
2,492,878	+		DDA3937_RS11045	0.44	-0.9
2,492,879	-		DDA3937_RS11045	0.44	+0.7
2,492,879	-		DDA3937_RS11045	0.44	+4.1
2,492,989	+		DDA3937_RS11045	0.52	-0.7
2,492,990	-		DDA3937_RS11045	0.52	+0.1
2,492,990	-		DDA3937_RS11045	0.52	-1.1
2,492,990	-		DDA3937_RS11045	0.52	-0.7
2,493,059	+		DDA3937_RS11045	0.57	-2.0
2,493,059	+		DDA3937_RS11045	0.57	+0.4
2,493,059	+		DDA3937_RS11045	0.57	+0.3
2,493,225	+		DDA3937_RS11045	0.69	+1.8
2,493,226	-		DDA3937_RS11045	0.69	+1.9
2,493,226	-		DDA3937_RS11045	0.69	-1.7
2,493,362	-		DDA3937_RS11045	0.79	-1.5
2,493,629	+				+0.7
2,493,629	+				-1.0
2,493,629	+				-0.7
2,493,630	-				-0.2
2,493,671	+				-0.5
2,493,671	+				-0.7
2,493,671	+				+0.9
2,493,672	-				-1.6
2,493,672	-				-0.1
2,493,672	-				+0.9
2,493,685	+				-1.8
2,493,686	-				+0.4
2,493,686	-				+1.0
2,493,744	+				-0.7
2,493,745	-				+0.5
2,493,866	-				-0.1
2,493,866	-				-0.6
2,493,908	+				-1.1
2,493,908	+				-1.0
2,493,908	+				-0.4
2,493,908	+				-0.6
2,493,909	-				-2.8
2,493,909	-				-1.1
2,493,909	-				-0.3
2,494,060	-		DDA3937_RS11050	0.27	-1.1
2,494,060	-		DDA3937_RS11050	0.27	+1.2
2,494,060	-		DDA3937_RS11050	0.27	-1.8
2,494,061	+		DDA3937_RS11050	0.27	+0.9
2,494,061	+		DDA3937_RS11050	0.27	+0.4
2,494,062	-		DDA3937_RS11050	0.27	-0.1
2,494,128	+				-0.5
2,494,128	+		DDA3937_RS11050	0.39	+0.7
2,494,128	+		DDA3937_RS11050	0.39	-1.1
2,494,128	+				+1.7
2,494,128	+		DDA3937_RS11050	0.39	+0.1
2,494,128	+		DDA3937_RS11050	0.39	+0.5
2,494,129	-		DDA3937_RS11050	0.39	-0.8
2,494,129	-		DDA3937_RS11050	0.39	-1.4
2,494,129	-		DDA3937_RS11050	0.39	-1.1
2,494,129	-		DDA3937_RS11050	0.39	-1.3
2,494,129	-		DDA3937_RS11050	0.39	-0.5
2,494,129	-		DDA3937_RS11050	0.39	+0.7
2,494,129	-		DDA3937_RS11050	0.39	+0.9
2,494,129	-		DDA3937_RS11050	0.39	-0.3
2,494,129	-				-0.1
2,494,129	-		DDA3937_RS11050	0.39	-1.7
2,494,129	-				+0.9
2,494,129	-		DDA3937_RS11050	0.39	+0.6
2,494,134	+		DDA3937_RS11050	0.40	-2.0
2,494,134	+		DDA3937_RS11050	0.40	+0.7
2,494,134	+		DDA3937_RS11050	0.40	-0.4
2,494,134	+		DDA3937_RS11050	0.40	+2.0
2,494,135	-		DDA3937_RS11050	0.40	-1.6
2,494,146	-		DDA3937_RS11050	0.42	-0.7
2,494,275	+		DDA3937_RS11050	0.66	-0.9
2,494,275	+		DDA3937_RS11050	0.66	-2.5
2,494,276	-		DDA3937_RS11050	0.66	+0.0
2,494,306	-		DDA3937_RS11050	0.71	-0.7
2,494,324	-		DDA3937_RS11050	0.75	-2.0
2,494,324	-		DDA3937_RS11050	0.75	+2.1
2,494,324	-		DDA3937_RS11050	0.75	+0.4
2,494,324	-		DDA3937_RS11050	0.75	-0.5
2,494,420	-				+0.8
2,494,492	-				+0.7
2,494,586	+		DDA3937_RS11055	0.25	-0.1
2,494,586	+		DDA3937_RS11055	0.25	-1.1
2,494,586	+		DDA3937_RS11055	0.25	-0.7
2,494,587	-		DDA3937_RS11055	0.25	-0.5
2,494,632	+		DDA3937_RS11055	0.33	-1.3