Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10820

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,435,709	+		DDA3937_RS10815	0.38	-0.1
2,435,709	+		DDA3937_RS10815	0.38	+0.8
2,435,709	+		DDA3937_RS10815	0.38	-2.8
2,435,744	-		DDA3937_RS10815	0.41	+0.7
2,435,744	-		DDA3937_RS10815	0.41	-0.9
2,435,787	-		DDA3937_RS10815	0.44	-1.9
2,435,873	+		DDA3937_RS10815	0.50	-0.4
2,435,873	+		DDA3937_RS10815	0.50	-1.0
2,435,874	-		DDA3937_RS10815	0.51	-0.4
2,435,874	-				+0.3
2,435,874	-		DDA3937_RS10815	0.51	+0.1
2,435,887	+		DDA3937_RS10815	0.52	+0.6
2,435,887	+		DDA3937_RS10815	0.52	+0.2
2,435,887	+		DDA3937_RS10815	0.52	-0.0
2,435,887	+		DDA3937_RS10815	0.52	-1.1
2,435,887	+		DDA3937_RS10815	0.52	-1.8
2,435,887	+		DDA3937_RS10815	0.52	+0.9
2,435,887	+		DDA3937_RS10815	0.52	+1.8
2,435,887	+				+2.8
2,435,887	+		DDA3937_RS10815	0.52	-0.0
2,435,887	+		DDA3937_RS10815	0.52	-0.3
2,435,887	+		DDA3937_RS10815	0.52	-2.7
2,435,887	+		DDA3937_RS10815	0.52	+1.1
2,435,888	-		DDA3937_RS10815	0.52	+2.0
2,435,888	-		DDA3937_RS10815	0.52	-1.1
2,435,888	-		DDA3937_RS10815	0.52	+0.1
2,435,888	-		DDA3937_RS10815	0.52	+0.2
2,435,888	-		DDA3937_RS10815	0.52	+0.5
2,435,888	-		DDA3937_RS10815	0.52	-1.8
2,435,888	-				-0.7
2,435,888	-		DDA3937_RS10815	0.52	+0.4
2,435,888	-		DDA3937_RS10815	0.52	-0.3
2,435,888	-		DDA3937_RS10815	0.52	+0.7
2,435,888	-		DDA3937_RS10815	0.52	+1.1
2,435,888	-		DDA3937_RS10815	0.52	-0.3
2,435,892	-		DDA3937_RS10815	0.52	+0.1
2,436,024	+		DDA3937_RS10815	0.62	-0.7
2,436,025	-		DDA3937_RS10815	0.62	-0.1
2,436,025	-		DDA3937_RS10815	0.62	+0.2
2,436,036	+		DDA3937_RS10815	0.63	+0.9
2,436,053	+		DDA3937_RS10815	0.64	+0.6
2,436,053	+		DDA3937_RS10815	0.64	-0.1
2,436,060	+		DDA3937_RS10815	0.64	-1.7
2,436,060	+		DDA3937_RS10815	0.64	-1.1
2,436,061	-		DDA3937_RS10815	0.64	+0.3
2,436,061	-		DDA3937_RS10815	0.64	+0.7
2,436,197	-		DDA3937_RS10815	0.75	-1.1
2,436,197	-		DDA3937_RS10815	0.75	+0.7
2,436,234	+		DDA3937_RS10815	0.77	-1.0
2,436,234	+		DDA3937_RS10815	0.77	+1.2
2,436,235	-		DDA3937_RS10815	0.77	-0.4
2,436,522	+				+0.1
2,436,522	+				-0.7
2,436,522	+				-0.7
2,436,522	+				+0.1
2,436,523	-				-0.9
2,436,523	-				-1.1
2,436,523	-				+0.0
2,436,524	+				+1.1
2,436,524	+				-2.1
2,436,524	+				-0.1
2,436,524	+				-0.5
2,436,524	+				-2.7
2,436,524	+				-1.1
2,436,524	+				-0.1
2,436,525	-				-1.2
2,436,525	-				-1.4
2,436,525	-				+0.4
2,436,525	-				-0.4
2,436,645	+				-1.7
2,436,645	+				-0.3
2,436,714	+				-1.1
2,436,836	+		DDA3937_RS10820	0.16	+0.5
2,436,836	+		DDA3937_RS10820	0.16	-1.3
2,436,836	+		DDA3937_RS10820	0.16	+0.1
2,436,915	-		DDA3937_RS10820	0.21	-1.4
2,436,946	+		DDA3937_RS10820	0.23	-0.1
2,436,947	-		DDA3937_RS10820	0.23	+2.2
2,437,030	-		DDA3937_RS10820	0.28	+0.5
2,437,030	-		DDA3937_RS10820	0.28	+2.2
2,437,408	+		DDA3937_RS10820	0.49	+2.5
2,437,408	+		DDA3937_RS10820	0.49	-2.4
2,437,409	-		DDA3937_RS10820	0.50	+0.0
2,437,541	+		DDA3937_RS10820	0.57	+0.5
2,437,541	+		DDA3937_RS10820	0.57	-0.2
2,437,542	-		DDA3937_RS10820	0.57	-0.9
2,437,542	-		DDA3937_RS10820	0.57	+0.2
2,437,600	-		DDA3937_RS10820	0.61	-1.8
2,438,011	-		DDA3937_RS10820	0.84	-1.1
2,438,029	+		DDA3937_RS10820	0.85	-0.7
2,438,041	-		DDA3937_RS10820	0.86	+0.0
2,438,141	+				-0.2
2,438,141	+				-0.6
2,438,141	+				-0.2
2,438,141	+				-0.8
2,438,141	+				-1.9
2,438,142	-				+2.0
2,438,142	-				+0.7
2,438,154	+				-1.1
2,438,154	+				+0.5
2,438,154	+				+0.5
2,438,154	+				-0.7
2,438,154	+				-0.2
2,438,154	+				-1.0
2,438,155	-				-0.5
2,438,155	-				-2.4
2,438,155	-				+0.2
2,438,155	-				+0.5
2,438,155	-				+1.1
2,438,155	-				-2.1
2,438,155	-				-0.9
2,438,155	-				-2.4
2,438,155	-				+0.9
2,438,155	-				+2.0
2,438,155	-				-1.1
2,438,156	+				-2.3
2,438,156	+				-0.4
2,438,156	+				-0.3
2,438,156	+				-2.7
2,438,156	+				-1.7
2,438,156	+				-0.1
2,438,156	+				-1.1
2,438,156	+				-2.6
2,438,156	+				+0.8
2,438,156	+				+0.3
2,438,156	+				-1.1
2,438,156	+				+0.7
2,438,156	+				-0.9
2,438,156	+				+0.9
2,438,157	-				+1.6
2,438,157	-				-0.1
2,438,157	-				-1.4
2,438,157	-				-0.4
2,438,157	-				-2.7
2,438,157	-				-0.2
2,438,157	-				-1.3
2,438,157	-				+0.2
2,438,157	-				-3.1
2,438,157	-				-0.8
2,438,158	+				+0.6
2,438,158	+				+0.9
2,438,158	+				-1.2
2,438,159	-				+0.9
2,438,159	-				-1.2
2,438,159	-				-1.1
2,438,159	-				+0.6
2,438,299	-				+0.6
2,438,341	+		DDA3937_RS10825	0.12	-0.2
2,438,341	+		DDA3937_RS10825	0.12	+0.3
2,438,341	+		DDA3937_RS10825	0.12	-2.7
2,438,341	+		DDA3937_RS10825	0.12	+1.6
2,438,341	+		DDA3937_RS10825	0.12	-1.7
2,438,341	+		DDA3937_RS10825	0.12	+0.3
2,438,341	+		DDA3937_RS10825	0.12	-1.1
2,438,341	+		DDA3937_RS10825	0.12	-0.7
2,438,341	+		DDA3937_RS10825	0.12	-2.0
2,438,341	+		DDA3937_RS10825	0.12	+0.5
2,438,341	+		DDA3937_RS10825	0.12	+0.5
2,438,341	+		DDA3937_RS10825	0.12	-1.3
2,438,342	-		DDA3937_RS10825	0.12	+0.1
2,438,342	-		DDA3937_RS10825	0.12	-0.1
2,438,342	-		DDA3937_RS10825	0.12	-1.7
2,438,608	+		DDA3937_RS10825	0.86	-2.3
2,438,608	+		DDA3937_RS10825	0.86	-2.6
2,438,608	+		DDA3937_RS10825	0.86	-0.7
2,438,608	+		DDA3937_RS10825	0.86	-2.1
2,438,609	-		DDA3937_RS10825	0.86	+2.1
2,438,609	-		DDA3937_RS10825	0.86	+0.5
2,438,633	+				+0.4
2,438,633	+				+1.0
2,438,633	+				-1.0
2,438,644	+				+0.9
2,438,644	+				+0.4
2,438,647	+				-0.4
2,438,662	+				+0.2
2,438,695	+				-0.7
2,438,696	-				+0.4
2,438,696	-				-1.3
2,438,698	+				-1.8
2,438,698	+				+0.1
2,438,720	+				+0.4
2,438,720	+				+0.9
2,438,721	-				+0.0
2,438,721	-				-0.5
2,438,721	-				+0.7
2,438,721	-				+3.0
2,438,721	-				+1.5
2,438,738	+				-1.2
2,438,739	-				-0.6
2,438,740	+				-0.7
2,438,740	+				-2.1
2,438,901	-				-0.5
2,438,922	-				-0.1
2,439,120	-		DDA3937_RS10830	0.22	-1.1
2,439,139	+				+0.9
2,439,140	-		DDA3937_RS10830	0.23	-0.4
2,439,170	+		DDA3937_RS10830	0.25	+0.4
2,439,176	+		DDA3937_RS10830	0.25	+5.7
2,439,177	-		DDA3937_RS10830	0.26	+2.1