Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10510

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,364,113	+		DDA3937_RS10500	0.66	+1.3
2,364,113	+		DDA3937_RS10500	0.66	+3.2
2,364,114	-		DDA3937_RS10500	0.66	-1.9
2,364,237	+		DDA3937_RS10500	0.80	-1.9
2,364,238	-		DDA3937_RS10500	0.80	-1.1
2,364,238	-		DDA3937_RS10500	0.80	+1.3
2,364,241	+		DDA3937_RS10500	0.80	+3.4
2,364,241	+		DDA3937_RS10500	0.80	-0.9
2,364,242	-		DDA3937_RS10500	0.80	+1.7
2,364,425	+				-0.4
2,364,425	+				-1.3
2,364,426	-				-1.9
2,364,426	-				+2.2
2,364,477	+				-2.0
2,364,478	-				+0.0
2,364,478	-				-0.1
2,364,517	-				-1.5
2,364,669	-		DDA3937_RS10505	0.31	+0.6
2,364,669	-		DDA3937_RS10505	0.31	-0.3
2,364,686	+		DDA3937_RS10505	0.34	-0.6
2,364,686	+		DDA3937_RS10505	0.34	-0.9
2,364,686	+		DDA3937_RS10505	0.34	-1.7
2,364,686	+		DDA3937_RS10505	0.34	-0.7
2,364,686	+		DDA3937_RS10505	0.34	+0.0
2,364,687	-		DDA3937_RS10505	0.34	-0.7
2,364,687	-		DDA3937_RS10505	0.34	-0.8
2,364,687	-		DDA3937_RS10505	0.34	-0.5
2,364,687	-		DDA3937_RS10505	0.34	-0.0
2,364,687	-				-1.1
2,364,687	-		DDA3937_RS10505	0.34	+0.3
2,364,739	+		DDA3937_RS10505	0.43	-1.6
2,364,739	+		DDA3937_RS10505	0.43	-1.0
2,364,739	+		DDA3937_RS10505	0.43	+0.1
2,364,739	+		DDA3937_RS10505	0.43	-1.3
2,364,805	-		DDA3937_RS10505	0.54	-1.3
2,364,885	+		DDA3937_RS10505	0.67	+0.2
2,364,885	+		DDA3937_RS10505	0.67	-1.0
2,365,177	+		DDA3937_RS10510	0.10	-0.2
2,365,177	+		DDA3937_RS10510	0.10	-1.7
2,365,177	+		DDA3937_RS10510	0.10	-1.6
2,365,178	-		DDA3937_RS10510	0.10	-0.5
2,365,178	-		DDA3937_RS10510	0.10	-0.7
2,365,178	-		DDA3937_RS10510	0.10	-0.1
2,365,181	+		DDA3937_RS10510	0.11	-1.0
2,365,181	+		DDA3937_RS10510	0.11	-2.7
2,365,187	+		DDA3937_RS10510	0.12	+1.1
2,365,221	+		DDA3937_RS10510	0.16	+0.1
2,365,298	-		DDA3937_RS10510	0.26	-1.0
2,365,313	+				+0.9
2,365,314	-		DDA3937_RS10510	0.28	+1.8
2,365,328	-		DDA3937_RS10510	0.30	+0.6
2,365,367	+		DDA3937_RS10510	0.35	-0.7
2,365,473	+		DDA3937_RS10510	0.49	-0.9
2,365,567	-		DDA3937_RS10510	0.61	-1.2
2,365,667	+		DDA3937_RS10510	0.75	-1.1
2,365,667	+		DDA3937_RS10510	0.75	-1.9
2,365,667	+		DDA3937_RS10510	0.75	+0.0
2,365,667	+		DDA3937_RS10510	0.75	-0.4
2,365,668	-		DDA3937_RS10510	0.75	-0.6
2,365,668	-		DDA3937_RS10510	0.75	-0.2
2,365,766	+		DDA3937_RS10510	0.88	-0.1
2,365,818	+				-1.3
2,365,818	+				-0.6
2,365,818	+				+1.8
2,365,818	+				-0.1
2,365,818	+				+0.3
2,365,819	-				-0.6
2,365,821	+				-2.2
2,365,821	+				+1.3
2,365,822	-				-1.1
2,365,932	+				-0.5
2,365,933	-				+0.1
2,365,946	+				-1.5
2,365,947	-				+0.2
2,366,016	+				-0.4
2,366,016	+				-2.9
2,366,016	+				+1.6
2,366,016	+				+0.1
2,366,016	+				-2.1
2,366,017	-				-1.1
2,366,017	-				+0.1
2,366,020	+				-1.5
2,366,021	-				-0.5
2,366,021	-				+0.3
2,366,049	+				-0.1
2,366,054	+				+0.9
2,366,060	-				-0.7
2,366,114	+				-1.9
2,366,114	+				+0.9
2,366,114	+				+0.4
2,366,114	+				-0.1
2,366,114	+				+0.7
2,366,114	+				+0.6
2,366,114	+				+0.2
2,366,115	-				-0.9
2,366,115	-				+0.8
2,366,115	-				+0.3
2,366,115	-				-1.1
2,366,116	+				-1.7
2,366,117	-				-0.9
2,366,140	+				-0.0
2,366,152	+				-0.7
2,366,152	+				-0.3
2,366,153	-				+0.9
2,366,164	-				-1.5
2,366,234	+				-2.8
2,366,246	+				+1.3
2,366,247	-				-0.7
2,366,258	+		DDA3937_RS10515	0.11	+1.9
2,366,258	+		DDA3937_RS10515	0.11	+1.4
2,366,258	+		DDA3937_RS10515	0.11	+1.9
2,366,295	+		DDA3937_RS10515	0.14	-1.4
2,366,429	+		DDA3937_RS10515	0.27	-1.7
2,366,429	+		DDA3937_RS10515	0.27	-0.0
2,366,451	+		DDA3937_RS10515	0.29	+0.6
2,366,451	+		DDA3937_RS10515	0.29	+1.3
2,366,451	+		DDA3937_RS10515	0.29	+0.1
2,366,451	+		DDA3937_RS10515	0.29	-0.8
2,366,451	+		DDA3937_RS10515	0.29	+1.9
2,366,451	+		DDA3937_RS10515	0.29	+2.0
2,366,451	+		DDA3937_RS10515	0.29	+0.1
2,366,452	-				+1.6
2,366,452	-		DDA3937_RS10515	0.29	+0.7
2,366,491	+		DDA3937_RS10515	0.33	-1.3
2,366,491	+				+0.9
2,366,492	-		DDA3937_RS10515	0.33	-1.1
2,366,657	-		DDA3937_RS10515	0.49	-1.7
2,366,660	+		DDA3937_RS10515	0.49	-2.3
2,366,660	+		DDA3937_RS10515	0.49	-0.4
2,366,660	+		DDA3937_RS10515	0.49	-0.3
2,366,661	-		DDA3937_RS10515	0.49	-0.7
2,366,661	-		DDA3937_RS10515	0.49	-2.0
2,366,682	+		DDA3937_RS10515	0.51	-0.7
2,366,682	+				-1.1
2,366,684	+		DDA3937_RS10515	0.51	+0.5
2,366,684	+				+1.2
2,366,684	+		DDA3937_RS10515	0.51	-1.5
2,366,684	+		DDA3937_RS10515	0.51	-0.1
2,366,685	-		DDA3937_RS10515	0.52	+0.1
2,366,685	-		DDA3937_RS10515	0.52	+0.1
2,366,685	-		DDA3937_RS10515	0.52	+0.5
2,366,685	-		DDA3937_RS10515	0.52	-0.1
2,366,685	-		DDA3937_RS10515	0.52	-1.5
2,366,809	+		DDA3937_RS10515	0.63	-0.8
2,366,810	-		DDA3937_RS10515	0.64	-0.9
2,366,810	-		DDA3937_RS10515	0.64	+3.0
2,366,810	-		DDA3937_RS10515	0.64	-0.6
2,366,814	-		DDA3937_RS10515	0.64	-1.1
2,366,826	+		DDA3937_RS10515	0.65	-1.7
2,366,826	+		DDA3937_RS10515	0.65	-2.5
2,366,834	+		DDA3937_RS10515	0.66	-0.7
2,366,835	-		DDA3937_RS10515	0.66	-0.8