Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07345

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,653,872	+				-2.3
1,653,915	-				+1.1
1,653,921	+				-1.5
1,653,925	+				-1.8
1,653,925	+				-0.8
1,653,926	-				-0.5
1,653,926	-				-2.7
1,653,926	-				+2.1
1,653,939	+		DDA3937_RS07335	0.12	+1.1
1,653,979	-		DDA3937_RS07335	0.24	+0.1
1,654,109	+		DDA3937_RS07335	0.63	-1.2
1,654,109	+		DDA3937_RS07335	0.63	-0.5
1,654,109	+		DDA3937_RS07335	0.63	-0.4
1,654,110	-		DDA3937_RS07335	0.64	-0.7
1,654,110	-		DDA3937_RS07335	0.64	-2.5
1,654,176	+		DDA3937_RS07335	0.83	-0.1
1,654,219	-				-1.6
1,654,288	+		DDA3937_RS07340	0.14	-0.4
1,654,319	-		DDA3937_RS07340	0.23	-1.5
1,654,332	+				+4.8
1,654,333	-		DDA3937_RS07340	0.27	-2.1
1,654,334	+		DDA3937_RS07340	0.27	-1.5
1,654,335	-		DDA3937_RS07340	0.28	-1.4
1,654,495	+		DDA3937_RS07340	0.75	+0.7
1,654,561	+				-0.6
1,654,598	+				-2.2
1,654,610	-				-0.3
1,654,636	+				-0.5
1,654,636	+				+0.5
1,654,637	-				+0.5
1,654,638	+				-0.9
1,654,638	+				-0.5
1,654,638	+				+0.6
1,654,639	-				-0.9
1,654,673	-				-1.2
1,654,736	+				-1.3
1,654,736	+				-2.1
1,654,737	-				-0.0
1,654,777	-				-0.4
1,654,818	+				-0.0
1,654,818	+				-0.9
1,654,819	-				-1.0
1,654,819	-				-1.9
1,654,819	-				+1.1
1,654,820	+				-0.7
1,654,951	+				-1.2
1,654,951	+				+2.0
1,654,952	-				+0.9
1,654,986	-		DDA3937_RS07345	0.11	+0.1
1,655,100	+		DDA3937_RS07345	0.21	-1.7
1,655,113	-		DDA3937_RS07345	0.22	-0.4
1,655,142	+		DDA3937_RS07345	0.24	-0.5
1,655,142	+		DDA3937_RS07345	0.24	-0.1
1,655,142	+		DDA3937_RS07345	0.24	-0.5
1,655,143	-		DDA3937_RS07345	0.24	+0.2
1,655,148	+		DDA3937_RS07345	0.25	-1.2
1,655,148	+		DDA3937_RS07345	0.25	+0.1
1,655,172	+				+0.4
1,655,234	+		DDA3937_RS07345	0.32	+1.2
1,655,234	+		DDA3937_RS07345	0.32	+1.0
1,655,235	-		DDA3937_RS07345	0.32	+1.7
1,655,239	-		DDA3937_RS07345	0.32	+4.2
1,655,269	-		DDA3937_RS07345	0.35	+0.8
1,655,269	-		DDA3937_RS07345	0.35	-1.7
1,655,276	+		DDA3937_RS07345	0.35	+0.3
1,655,276	+		DDA3937_RS07345	0.35	-0.4
1,655,277	-		DDA3937_RS07345	0.35	-0.4
1,655,399	+		DDA3937_RS07345	0.46	-2.4
1,655,399	+		DDA3937_RS07345	0.46	-1.5
1,655,400	-		DDA3937_RS07345	0.46	-0.7
1,655,400	-		DDA3937_RS07345	0.46	-1.7
1,655,400	-		DDA3937_RS07345	0.46	+2.1
1,655,401	+		DDA3937_RS07345	0.46	-2.8
1,655,401	+		DDA3937_RS07345	0.46	+0.5
1,655,401	+		DDA3937_RS07345	0.46	-0.8
1,655,401	+		DDA3937_RS07345	0.46	-0.5
1,655,401	+		DDA3937_RS07345	0.46	+1.1
1,655,401	+		DDA3937_RS07345	0.46	+0.5
1,655,402	-				+1.1
1,655,402	-		DDA3937_RS07345	0.46	-1.3
1,655,420	+		DDA3937_RS07345	0.47	-0.9
1,655,470	+		DDA3937_RS07345	0.52	-0.9
1,655,470	+		DDA3937_RS07345	0.52	-1.9
1,655,470	+		DDA3937_RS07345	0.52	-0.7
1,655,470	+		DDA3937_RS07345	0.52	-0.3
1,655,471	-		DDA3937_RS07345	0.52	-1.7
1,655,471	-		DDA3937_RS07345	0.52	+2.4
1,655,471	-		DDA3937_RS07345	0.52	+1.7
1,655,471	-		DDA3937_RS07345	0.52	-0.8
1,655,471	-		DDA3937_RS07345	0.52	-2.5
1,655,473	+		DDA3937_RS07345	0.52	+0.1
1,655,474	-		DDA3937_RS07345	0.52	+1.3
1,655,474	-		DDA3937_RS07345	0.52	+0.6
1,655,474	-		DDA3937_RS07345	0.52	+0.3
1,655,474	-		DDA3937_RS07345	0.52	+0.4
1,655,514	-		DDA3937_RS07345	0.55	+0.1
1,655,527	+		DDA3937_RS07345	0.56	-0.6
1,655,527	+		DDA3937_RS07345	0.56	+1.2
1,655,527	+		DDA3937_RS07345	0.56	-0.9
1,655,527	+		DDA3937_RS07345	0.56	+0.9
1,655,527	+		DDA3937_RS07345	0.56	-1.8
1,655,527	+		DDA3937_RS07345	0.56	-1.8
1,655,527	+		DDA3937_RS07345	0.56	+1.1
1,655,528	-		DDA3937_RS07345	0.56	-0.5
1,655,528	-				+0.1
1,655,528	-		DDA3937_RS07345	0.56	+1.4
1,655,528	-		DDA3937_RS07345	0.56	-1.5
1,655,528	-		DDA3937_RS07345	0.56	-1.2
1,655,530	+		DDA3937_RS07345	0.56	+1.6
1,655,531	-		DDA3937_RS07345	0.57	+0.1
1,655,531	-		DDA3937_RS07345	0.57	-1.1
1,655,531	-		DDA3937_RS07345	0.57	+0.5
1,655,551	-		DDA3937_RS07345	0.58	-2.5
1,655,572	+		DDA3937_RS07345	0.60	-2.9
1,655,572	+		DDA3937_RS07345	0.60	+0.5
1,655,572	+		DDA3937_RS07345	0.60	+0.3
1,655,573	-				+0.1
1,655,573	-		DDA3937_RS07345	0.60	+0.7
1,655,573	-		DDA3937_RS07345	0.60	-0.3
1,655,581	+		DDA3937_RS07345	0.61	-0.9
1,655,582	-		DDA3937_RS07345	0.61	-0.3
1,655,582	-		DDA3937_RS07345	0.61	+0.0
1,655,606	-		DDA3937_RS07345	0.63	-1.7
1,655,606	-		DDA3937_RS07345	0.63	+0.8
1,655,616	-		DDA3937_RS07345	0.64	-1.2
1,655,616	-		DDA3937_RS07345	0.64	+1.3
1,655,747	+		DDA3937_RS07345	0.75	-1.7
1,655,775	+		DDA3937_RS07345	0.77	+2.7
1,655,903	+		DDA3937_RS07345	0.88	+1.0
1,655,904	-		DDA3937_RS07345	0.88	+0.8
1,655,922	+		DDA3937_RS07345	0.89	-0.9
1,655,923	-		DDA3937_RS07345	0.89	-0.5
1,655,958	+				-0.9
1,655,990	+				-0.4
1,655,991	-				-0.7
1,655,991	-				-1.6
1,656,014	+				-0.2
1,656,015	-				+3.0
1,656,015	-				-0.7
1,656,025	-				-0.8
1,656,072	+				+0.7
1,656,073	-				+1.5
1,656,073	-				-0.8
1,656,115	+				-0.7
1,656,116	-				-0.9
1,656,133	+				-1.0
1,656,133	+				-1.5
1,656,134	-				-0.1
1,656,149	+				-1.9
1,656,149	+				+0.1
1,656,150	-				+0.5
1,656,150	-				-2.1
1,656,150	-				-1.7
1,656,150	-				-1.2
1,656,152	+				-0.2
1,656,152	+				-1.3
1,656,152	+				+1.7
1,656,152	+				+1.7
1,656,153	-				-0.3
1,656,153	-				+0.4
1,656,197	+				-1.2
1,656,198	-				+0.0
1,656,227	+				-1.6
1,656,227	+				-0.2
1,656,227	+				-0.9
1,656,228	-				-2.0
1,656,228	-				-0.5
1,656,230	+				-1.2
1,656,231	-				+0.2
1,656,231	-				+0.6
1,656,244	+				+0.6
1,656,245	-				+0.3
1,656,295	+				-0.6
1,656,296	-				-0.6
1,656,388	+		DDA3937_RS07350	0.12	+0.5
1,656,436	+		DDA3937_RS07350	0.15	-0.1
1,656,437	-		DDA3937_RS07350	0.15	-0.5
1,656,442	+		DDA3937_RS07350	0.16	+0.1
1,656,442	+		DDA3937_RS07350	0.16	-0.1
1,656,442	+		DDA3937_RS07350	0.16	-0.1
1,656,443	-		DDA3937_RS07350	0.16	+0.3
1,656,443	-		DDA3937_RS07350	0.16	+0.9
1,656,518	+		DDA3937_RS07350	0.20	+0.5
1,656,589	+		DDA3937_RS07350	0.24	+0.7
1,656,612	+		DDA3937_RS07350	0.25	-2.5
1,656,612	+		DDA3937_RS07350	0.25	+2.1
1,656,613	-		DDA3937_RS07350	0.25	+1.3
1,656,613	-		DDA3937_RS07350	0.25	-0.1
1,656,613	-		DDA3937_RS07350	0.25	+0.4
1,656,655	-		DDA3937_RS07350	0.28	+1.1
1,656,655	-		DDA3937_RS07350	0.28	-1.5
1,656,659	+		DDA3937_RS07350	0.28	-0.8
1,656,659	+		DDA3937_RS07350	0.28	+1.1
1,656,659	+		DDA3937_RS07350	0.28	-0.5
1,656,660	-		DDA3937_RS07350	0.28	+0.9
1,656,660	-		DDA3937_RS07350	0.28	-0.1
1,656,660	-		DDA3937_RS07350	0.28	-0.2
1,656,660	-		DDA3937_RS07350	0.28	-2.6
1,656,660	-		DDA3937_RS07350	0.28	-2.3
1,656,687	+		DDA3937_RS07350	0.29	-1.2
1,656,709	+		DDA3937_RS07350	0.31	-0.1
1,656,709	+		DDA3937_RS07350	0.31	+0.3
1,656,710	-		DDA3937_RS07350	0.31	+1.7
1,656,710	-		DDA3937_RS07350	0.31	-0.2
1,656,710	-		DDA3937_RS07350	0.31	-0.6
1,656,711	+		DDA3937_RS07350	0.31	+0.8
1,656,712	-		DDA3937_RS07350	0.31	+0.6
1,656,712	-		DDA3937_RS07350	0.31	-0.3
1,656,712	-		DDA3937_RS07350	0.31	+0.2
1,656,744	+		DDA3937_RS07350	0.33	+0.1
1,656,747	+		DDA3937_RS07350	0.33	+1.0
1,656,748	-		DDA3937_RS07350	0.33	-3.5
1,656,748	-		DDA3937_RS07350	0.33	-1.7
1,656,767	+		DDA3937_RS07350	0.34	-1.2
1,656,768	-		DDA3937_RS07350	0.34	-2.0
1,656,802	-		DDA3937_RS07350	0.36	-0.2
1,656,825	+		DDA3937_RS07350	0.37	-1.8
1,656,826	-		DDA3937_RS07350	0.37	-0.2
1,656,826	-		DDA3937_RS07350	0.37	-0.9
1,656,826	-		DDA3937_RS07350	0.37	-0.3
1,656,853	+		DDA3937_RS07350	0.39	+0.1
1,656,853	+				+1.7
1,656,858	+		DDA3937_RS07350	0.39	+2.1
1,656,859	-		DDA3937_RS07350	0.39	+0.9
1,656,862	-		DDA3937_RS07350	0.39	-1.2
1,656,862	-		DDA3937_RS07350	0.39	+0.5
1,656,891	-		DDA3937_RS07350	0.41	+0.1
1,656,935	-		DDA3937_RS07350	0.43	-0.5
1,656,935	-		DDA3937_RS07350	0.43	+1.7
1,656,935	-		DDA3937_RS07350	0.43	+0.5
1,656,951	-		DDA3937_RS07350	0.44	+0.2
1,657,003	-		DDA3937_RS07350	0.47	+0.3
1,657,018	-		DDA3937_RS07350	0.48	+2.0
1,657,021	-		DDA3937_RS07350	0.48	-0.6
1,657,021	-		DDA3937_RS07350	0.48	+0.7
1,657,032	-		DDA3937_RS07350	0.49	-1.4
1,657,032	-		DDA3937_RS07350	0.49	+0.4