Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06315

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06310 and DDA3937_RS06315 are separated by 335 nucleotidesDDA3937_RS06315 and DDA3937_RS06320 are separated by 163 nucleotides DDA3937_RS06310: DDA3937_RS06310 - glucosamine-6-phosphate deaminase, at 1,409,075 to 1,409,875 _RS06310 DDA3937_RS06315: DDA3937_RS06315 - PTS transporter subunit EIIC, at 1,410,211 to 1,411,683 _RS06315 DDA3937_RS06320: DDA3937_RS06320 - glutamine--tRNA ligase, at 1,411,847 to 1,413,505 _RS06320 Position (kb) 1410 1411 1412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1409.255 kb on - strand, within DDA3937_RS06310at 1409.325 kb on + strand, within DDA3937_RS06310at 1409.326 kb on - strand, within DDA3937_RS06310at 1409.493 kb on + strand, within DDA3937_RS06310at 1409.494 kb on - strand, within DDA3937_RS06310at 1409.514 kb on + strandat 1409.515 kb on - strand, within DDA3937_RS06310at 1409.607 kb on + strand, within DDA3937_RS06310at 1409.607 kb on + strand, within DDA3937_RS06310at 1409.607 kb on + strand, within DDA3937_RS06310at 1409.611 kb on + strand, within DDA3937_RS06310at 1409.611 kb on + strand, within DDA3937_RS06310at 1409.611 kb on + strand, within DDA3937_RS06310at 1409.611 kb on + strand, within DDA3937_RS06310at 1409.611 kb on + strand, within DDA3937_RS06310at 1409.612 kb on - strand, within DDA3937_RS06310at 1409.612 kb on - strand, within DDA3937_RS06310at 1409.612 kb on - strand, within DDA3937_RS06310at 1409.612 kb on - strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.655 kb on + strand, within DDA3937_RS06310at 1409.656 kb on - strand, within DDA3937_RS06310at 1409.656 kb on - strand, within DDA3937_RS06310at 1409.656 kb on - strand, within DDA3937_RS06310at 1409.666 kb on - strand, within DDA3937_RS06310at 1409.730 kb on + strand, within DDA3937_RS06310at 1409.731 kb on - strand, within DDA3937_RS06310at 1409.731 kb on - strand, within DDA3937_RS06310at 1409.911 kb on + strandat 1409.912 kb on - strandat 1409.936 kb on + strandat 1409.937 kb on - strandat 1409.952 kb on + strandat 1409.952 kb on + strandat 1409.952 kb on + strandat 1409.952 kb on + strandat 1409.953 kb on - strandat 1409.953 kb on - strandat 1409.953 kb on - strandat 1409.953 kb on - strandat 1409.955 kb on + strandat 1409.955 kb on + strandat 1409.955 kb on + strandat 1409.955 kb on + strandat 1409.955 kb on + strandat 1409.956 kb on - strandat 1409.956 kb on - strandat 1409.956 kb on - strandat 1410.031 kb on - strandat 1410.160 kb on + strandat 1410.160 kb on + strandat 1410.161 kb on - strandat 1410.161 kb on - strandat 1410.161 kb on - strandat 1410.161 kb on - strandat 1410.161 kb on - strandat 1410.162 kb on + strandat 1410.216 kb on + strandat 1410.216 kb on + strandat 1410.216 kb on + strandat 1410.216 kb on + strandat 1410.216 kb on + strandat 1410.299 kb on + strandat 1410.300 kb on - strandat 1410.387 kb on + strand, within DDA3937_RS06315at 1410.387 kb on + strand, within DDA3937_RS06315at 1410.388 kb on - strand, within DDA3937_RS06315at 1410.423 kb on + strand, within DDA3937_RS06315at 1410.423 kb on + strand, within DDA3937_RS06315at 1410.423 kb on + strand, within DDA3937_RS06315at 1410.423 kb on + strand, within DDA3937_RS06315at 1410.424 kb on - strand, within DDA3937_RS06315at 1410.424 kb on - strand, within DDA3937_RS06315at 1410.424 kb on - strand, within DDA3937_RS06315at 1410.435 kb on + strand, within DDA3937_RS06315at 1410.436 kb on - strand, within DDA3937_RS06315at 1410.436 kb on - strand, within DDA3937_RS06315at 1410.436 kb on - strand, within DDA3937_RS06315at 1410.491 kb on + strand, within DDA3937_RS06315at 1410.491 kb on + strand, within DDA3937_RS06315at 1410.558 kb on + strand, within DDA3937_RS06315at 1410.582 kb on + strand, within DDA3937_RS06315at 1410.613 kb on + strand, within DDA3937_RS06315at 1410.613 kb on + strand, within DDA3937_RS06315at 1410.614 kb on - strand, within DDA3937_RS06315at 1410.727 kb on + strand, within DDA3937_RS06315at 1410.727 kb on + strand, within DDA3937_RS06315at 1410.727 kb on + strand, within DDA3937_RS06315at 1410.727 kb on + strand, within DDA3937_RS06315at 1410.727 kb on + strand, within DDA3937_RS06315at 1410.728 kb on - strand, within DDA3937_RS06315at 1410.728 kb on - strand, within DDA3937_RS06315at 1410.728 kb on - strand, within DDA3937_RS06315at 1410.728 kb on - strand, within DDA3937_RS06315at 1410.745 kb on + strand, within DDA3937_RS06315at 1410.745 kb on + strand, within DDA3937_RS06315at 1410.745 kb on + strand, within DDA3937_RS06315at 1410.745 kb on + strand, within DDA3937_RS06315at 1410.746 kb on - strand, within DDA3937_RS06315at 1410.774 kb on + strand, within DDA3937_RS06315at 1410.774 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.808 kb on + strand, within DDA3937_RS06315at 1410.809 kb on - strand, within DDA3937_RS06315at 1410.809 kb on - strand, within DDA3937_RS06315at 1410.809 kb on - strand, within DDA3937_RS06315at 1410.809 kb on - strand, within DDA3937_RS06315at 1410.809 kb on - strand, within DDA3937_RS06315at 1410.897 kb on + strand, within DDA3937_RS06315at 1410.903 kb on + strand, within DDA3937_RS06315at 1410.903 kb on + strand, within DDA3937_RS06315at 1411.027 kb on + strand, within DDA3937_RS06315at 1411.027 kb on + strand, within DDA3937_RS06315at 1411.028 kb on - strand, within DDA3937_RS06315at 1411.028 kb on - strand, within DDA3937_RS06315at 1411.071 kb on + strand, within DDA3937_RS06315at 1411.071 kb on + strand, within DDA3937_RS06315at 1411.071 kb on + strand, within DDA3937_RS06315at 1411.072 kb on - strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.156 kb on + strand, within DDA3937_RS06315at 1411.157 kb on - strand, within DDA3937_RS06315at 1411.157 kb on - strand, within DDA3937_RS06315at 1411.157 kb on - strand, within DDA3937_RS06315at 1411.157 kb on - strand, within DDA3937_RS06315at 1411.251 kb on + strand, within DDA3937_RS06315at 1411.251 kb on + strand, within DDA3937_RS06315at 1411.252 kb on - strand, within DDA3937_RS06315at 1411.291 kb on + strand, within DDA3937_RS06315at 1411.292 kb on - strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.330 kb on + strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strandat 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strand, within DDA3937_RS06315at 1411.331 kb on - strandat 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.333 kb on + strand, within DDA3937_RS06315at 1411.334 kb on - strand, within DDA3937_RS06315at 1411.334 kb on - strand, within DDA3937_RS06315at 1411.334 kb on - strand, within DDA3937_RS06315at 1411.334 kb on - strand, within DDA3937_RS06315at 1411.334 kb on - strand, within DDA3937_RS06315at 1411.489 kb on - strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.512 kb on + strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strandat 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.513 kb on - strand, within DDA3937_RS06315at 1411.682 kb on - strandat 1411.725 kb on + strandat 1411.726 kb on - strandat 1411.735 kb on + strandat 1411.735 kb on + strandat 1411.735 kb on + strandat 1411.736 kb on - strandat 1411.755 kb on + strandat 1411.806 kb on + strandat 1411.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,409,255 - DDA3937_RS06310 0.22 -0.4
1,409,325 + DDA3937_RS06310 0.31 -0.8
1,409,326 - DDA3937_RS06310 0.31 -2.6
1,409,493 + DDA3937_RS06310 0.52 -2.3
1,409,494 - DDA3937_RS06310 0.52 +0.2
1,409,514 + +0.6
1,409,515 - DDA3937_RS06310 0.55 +0.9
1,409,607 + DDA3937_RS06310 0.66 -2.1
1,409,607 + DDA3937_RS06310 0.66 +1.4
1,409,607 + DDA3937_RS06310 0.66 -0.5
1,409,611 + DDA3937_RS06310 0.67 -1.5
1,409,611 + DDA3937_RS06310 0.67 -0.4
1,409,611 + DDA3937_RS06310 0.67 +0.1
1,409,611 + DDA3937_RS06310 0.67 -1.6
1,409,611 + DDA3937_RS06310 0.67 +0.2
1,409,612 - DDA3937_RS06310 0.67 -0.4
1,409,612 - DDA3937_RS06310 0.67 -0.5
1,409,612 - DDA3937_RS06310 0.67 -0.4
1,409,612 - DDA3937_RS06310 0.67 +1.7
1,409,655 + DDA3937_RS06310 0.72 +1.0
1,409,655 + DDA3937_RS06310 0.72 -0.0
1,409,655 + DDA3937_RS06310 0.72 -0.1
1,409,655 + DDA3937_RS06310 0.72 -0.6
1,409,655 + DDA3937_RS06310 0.72 -1.4
1,409,655 + DDA3937_RS06310 0.72 -1.4
1,409,656 - DDA3937_RS06310 0.73 -0.1
1,409,656 - DDA3937_RS06310 0.73 -0.0
1,409,656 - DDA3937_RS06310 0.73 -0.9
1,409,666 - DDA3937_RS06310 0.74 +0.1
1,409,730 + DDA3937_RS06310 0.82 -1.8
1,409,731 - DDA3937_RS06310 0.82 -0.2
1,409,731 - DDA3937_RS06310 0.82 -2.2
1,409,911 + -1.8
1,409,912 - -1.3
1,409,936 + +0.3
1,409,937 - -1.1
1,409,952 + -0.4
1,409,952 + -0.8
1,409,952 + -1.7
1,409,952 + -1.3
1,409,953 - -0.6
1,409,953 - -0.3
1,409,953 - -0.7
1,409,953 - +0.0
1,409,955 + +0.2
1,409,955 + -1.4
1,409,955 + -0.2
1,409,955 + -0.8
1,409,955 + -1.1
1,409,956 - -1.4
1,409,956 - -1.8
1,409,956 - +1.1
1,410,031 - -0.2
1,410,160 + -1.5
1,410,160 + -0.1
1,410,161 - -1.4
1,410,161 - -1.8
1,410,161 - -2.2
1,410,161 - -0.8
1,410,161 - -0.4
1,410,162 + -2.4
1,410,216 + +0.1
1,410,216 + -1.1
1,410,216 + -1.2
1,410,216 + +1.4
1,410,216 + +0.8
1,410,299 + -1.1
1,410,300 - +1.6
1,410,387 + DDA3937_RS06315 0.12 -1.8
1,410,387 + DDA3937_RS06315 0.12 +0.2
1,410,388 - DDA3937_RS06315 0.12 +0.3
1,410,423 + DDA3937_RS06315 0.14 +1.0
1,410,423 + DDA3937_RS06315 0.14 -0.4
1,410,423 + DDA3937_RS06315 0.14 +0.3
1,410,423 + DDA3937_RS06315 0.14 -0.9
1,410,424 - DDA3937_RS06315 0.14 -1.0
1,410,424 - DDA3937_RS06315 0.14 -0.6
1,410,424 - DDA3937_RS06315 0.14 -1.4
1,410,435 + DDA3937_RS06315 0.15 -2.4
1,410,436 - DDA3937_RS06315 0.15 -2.1
1,410,436 - DDA3937_RS06315 0.15 -1.8
1,410,436 - DDA3937_RS06315 0.15 -3.3
1,410,491 + DDA3937_RS06315 0.19 +0.6
1,410,491 + DDA3937_RS06315 0.19 -0.7
1,410,558 + DDA3937_RS06315 0.24 -1.3
1,410,582 + DDA3937_RS06315 0.25 -0.4
1,410,613 + DDA3937_RS06315 0.27 -0.5
1,410,613 + DDA3937_RS06315 0.27 +0.2
1,410,614 - DDA3937_RS06315 0.27 -0.0
1,410,727 + DDA3937_RS06315 0.35 -0.0
1,410,727 + DDA3937_RS06315 0.35 -0.6
1,410,727 + DDA3937_RS06315 0.35 +0.8
1,410,727 + DDA3937_RS06315 0.35 -0.8
1,410,727 + DDA3937_RS06315 0.35 -0.8
1,410,728 - DDA3937_RS06315 0.35 -1.6
1,410,728 - DDA3937_RS06315 0.35 -1.8
1,410,728 - DDA3937_RS06315 0.35 -1.8
1,410,728 - DDA3937_RS06315 0.35 -0.0
1,410,745 + DDA3937_RS06315 0.36 +0.6
1,410,745 + DDA3937_RS06315 0.36 -0.9
1,410,745 + DDA3937_RS06315 0.36 +0.1
1,410,745 + DDA3937_RS06315 0.36 -0.4
1,410,746 - DDA3937_RS06315 0.36 +0.2
1,410,774 + DDA3937_RS06315 0.38 -1.6
1,410,774 + DDA3937_RS06315 0.38 +1.2
1,410,808 + DDA3937_RS06315 0.41 -1.5
1,410,808 + DDA3937_RS06315 0.41 +0.6
1,410,808 + DDA3937_RS06315 0.41 +1.1
1,410,808 + DDA3937_RS06315 0.41 -0.4
1,410,808 + DDA3937_RS06315 0.41 -0.4
1,410,808 + DDA3937_RS06315 0.41 -1.1
1,410,808 + DDA3937_RS06315 0.41 -0.6
1,410,808 + DDA3937_RS06315 0.41 -1.5
1,410,809 - DDA3937_RS06315 0.41 -0.6
1,410,809 - DDA3937_RS06315 0.41 +0.1
1,410,809 - DDA3937_RS06315 0.41 -0.6
1,410,809 - DDA3937_RS06315 0.41 -0.6
1,410,809 - DDA3937_RS06315 0.41 -1.6
1,410,897 + DDA3937_RS06315 0.47 -0.4
1,410,903 + DDA3937_RS06315 0.47 -0.2
1,410,903 + DDA3937_RS06315 0.47 -1.2
1,411,027 + DDA3937_RS06315 0.55 +0.7
1,411,027 + DDA3937_RS06315 0.55 -0.5
1,411,028 - DDA3937_RS06315 0.55 -0.6
1,411,028 - DDA3937_RS06315 0.55 -1.0
1,411,071 + DDA3937_RS06315 0.58 -0.2
1,411,071 + DDA3937_RS06315 0.58 +0.0
1,411,071 + DDA3937_RS06315 0.58 +0.3
1,411,072 - DDA3937_RS06315 0.58 -0.0
1,411,156 + DDA3937_RS06315 0.64 +0.2
1,411,156 + DDA3937_RS06315 0.64 +0.7
1,411,156 + DDA3937_RS06315 0.64 +1.0
1,411,156 + DDA3937_RS06315 0.64 +3.5
1,411,156 + DDA3937_RS06315 0.64 +0.1
1,411,156 + DDA3937_RS06315 0.64 -0.5
1,411,156 + DDA3937_RS06315 0.64 -0.1
1,411,157 - DDA3937_RS06315 0.64 +1.6
1,411,157 - DDA3937_RS06315 0.64 +0.4
1,411,157 - DDA3937_RS06315 0.64 +2.3
1,411,157 - DDA3937_RS06315 0.64 -1.5
1,411,251 + DDA3937_RS06315 0.71 +4.5
1,411,251 + DDA3937_RS06315 0.71 -0.8
1,411,252 - DDA3937_RS06315 0.71 -0.4
1,411,291 + DDA3937_RS06315 0.73 +2.2
1,411,292 - DDA3937_RS06315 0.73 -1.9
1,411,330 + DDA3937_RS06315 0.76 -0.6
1,411,330 + DDA3937_RS06315 0.76 -0.2
1,411,330 + DDA3937_RS06315 0.76 +0.7
1,411,330 + DDA3937_RS06315 0.76 +1.1
1,411,330 + DDA3937_RS06315 0.76 -0.4
1,411,330 + DDA3937_RS06315 0.76 -1.6
1,411,330 + DDA3937_RS06315 0.76 -0.0
1,411,330 + DDA3937_RS06315 0.76 -0.8
1,411,330 + DDA3937_RS06315 0.76 -3.3
1,411,331 - DDA3937_RS06315 0.76 -0.2
1,411,331 - DDA3937_RS06315 0.76 -1.1
1,411,331 - DDA3937_RS06315 0.76 -0.8
1,411,331 - DDA3937_RS06315 0.76 +0.7
1,411,331 - DDA3937_RS06315 0.76 +0.6
1,411,331 - -0.8
1,411,331 - DDA3937_RS06315 0.76 -1.2
1,411,331 - DDA3937_RS06315 0.76 -1.0
1,411,331 - +0.6
1,411,333 + DDA3937_RS06315 0.76 -3.0
1,411,333 + DDA3937_RS06315 0.76 +1.4
1,411,333 + DDA3937_RS06315 0.76 +0.6
1,411,333 + DDA3937_RS06315 0.76 -2.2
1,411,333 + DDA3937_RS06315 0.76 -0.3
1,411,333 + DDA3937_RS06315 0.76 +1.0
1,411,333 + DDA3937_RS06315 0.76 +1.0
1,411,333 + DDA3937_RS06315 0.76 -0.6
1,411,334 - DDA3937_RS06315 0.76 +0.1
1,411,334 - DDA3937_RS06315 0.76 -0.4
1,411,334 - DDA3937_RS06315 0.76 +1.6
1,411,334 - DDA3937_RS06315 0.76 -1.1
1,411,334 - DDA3937_RS06315 0.76 +1.0
1,411,489 - DDA3937_RS06315 0.87 -0.4
1,411,512 + DDA3937_RS06315 0.88 +0.1
1,411,512 + DDA3937_RS06315 0.88 +0.4
1,411,512 + DDA3937_RS06315 0.88 +1.4
1,411,512 + DDA3937_RS06315 0.88 -1.4
1,411,512 + DDA3937_RS06315 0.88 -2.5
1,411,512 + DDA3937_RS06315 0.88 +2.0
1,411,512 + DDA3937_RS06315 0.88 -0.1
1,411,512 + DDA3937_RS06315 0.88 -0.6
1,411,513 - DDA3937_RS06315 0.88 -0.1
1,411,513 - DDA3937_RS06315 0.88 +1.0
1,411,513 - DDA3937_RS06315 0.88 +0.2
1,411,513 - +2.5
1,411,513 - DDA3937_RS06315 0.88 +0.1
1,411,513 - DDA3937_RS06315 0.88 -0.8
1,411,513 - DDA3937_RS06315 0.88 +0.2
1,411,513 - DDA3937_RS06315 0.88 +0.8
1,411,513 - DDA3937_RS06315 0.88 +0.5
1,411,682 - -0.6
1,411,725 + +0.9
1,411,726 - -0.3
1,411,735 + +2.2
1,411,735 + +0.4
1,411,735 + -1.9
1,411,736 - +0.1
1,411,755 + -0.4
1,411,806 + -0.4
1,411,813 + -1.5

Or see this region's nucleotide sequence