Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04730

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,041,618	-		DDA3937_RS04725	0.38	+1.1
1,041,644	+		DDA3937_RS04725	0.40	-0.2
1,041,644	+		DDA3937_RS04725	0.40	+0.4
1,041,701	-				+2.4
1,041,750	+		DDA3937_RS04725	0.49	-1.0
1,041,750	+		DDA3937_RS04725	0.49	-0.3
1,041,751	-		DDA3937_RS04725	0.50	-1.4
1,041,751	-		DDA3937_RS04725	0.50	-0.0
1,041,752	+		DDA3937_RS04725	0.50	+0.3
1,041,752	+		DDA3937_RS04725	0.50	-0.4
1,041,839	-		DDA3937_RS04725	0.57	-0.2
1,041,897	-		DDA3937_RS04725	0.62	+0.2
1,042,057	+		DDA3937_RS04725	0.76	-0.7
1,042,057	+		DDA3937_RS04725	0.76	-0.5
1,042,069	+		DDA3937_RS04725	0.77	-0.2
1,042,070	-		DDA3937_RS04725	0.77	-0.4
1,042,070	-		DDA3937_RS04725	0.77	-0.4
1,042,070	-		DDA3937_RS04725	0.77	-0.4
1,042,082	-		DDA3937_RS04725	0.78	-0.8
1,042,184	-		DDA3937_RS04725	0.87	-0.7
1,042,212	+				-1.0
1,042,213	-		DDA3937_RS04725	0.90	-0.4
1,042,213	-		DDA3937_RS04725	0.90	-0.3
1,042,284	-				-0.4
1,042,326	+				-0.1
1,042,327	-				-2.6
1,042,327	-				-0.2
1,042,327	-				-0.8
1,042,327	-				-1.8
1,042,327	-				-0.2
1,042,436	+				+0.5
1,042,436	+				+2.0
1,042,436	+				-2.6
1,042,437	-				-0.5
1,042,437	-				+0.5
1,042,472	-				-0.5
1,042,472	-				-2.4
1,042,577	+				-0.5
1,042,578	-				+0.0
1,042,598	+				+1.1
1,042,598	+				-0.4
1,042,598	+				-0.2
1,042,599	-				-2.2
1,042,599	-				-1.0
1,042,600	+				+0.8
1,042,676	+		DDA3937_RS04730	0.11	+0.1
1,042,706	-		DDA3937_RS04730	0.12	+0.7
1,042,778	+		DDA3937_RS04730	0.15	-2.4
1,042,779	-		DDA3937_RS04730	0.15	-0.2
1,042,953	+		DDA3937_RS04730	0.20	+0.1
1,042,954	-		DDA3937_RS04730	0.20	-1.3
1,042,954	-		DDA3937_RS04730	0.20	-0.2
1,042,954	-		DDA3937_RS04730	0.20	+0.4
1,043,272	+		DDA3937_RS04730	0.31	-1.4
1,043,357	-		DDA3937_RS04730	0.34	-1.4
1,043,357	-		DDA3937_RS04730	0.34	-1.2
1,043,676	+		DDA3937_RS04730	0.44	-0.2
1,043,724	-		DDA3937_RS04730	0.46	-1.3
1,043,729	+		DDA3937_RS04730	0.46	-0.4
1,043,729	+		DDA3937_RS04730	0.46	-2.3
1,043,730	-		DDA3937_RS04730	0.46	-0.4
1,043,730	-		DDA3937_RS04730	0.46	-2.0
1,043,736	+		DDA3937_RS04730	0.46	-1.6
1,043,740	+		DDA3937_RS04730	0.46	-0.6
1,043,740	+		DDA3937_RS04730	0.46	-0.1
1,043,740	+		DDA3937_RS04730	0.46	+0.8
1,043,740	+		DDA3937_RS04730	0.46	-0.2
1,043,740	+		DDA3937_RS04730	0.46	-0.7
1,043,741	-		DDA3937_RS04730	0.46	+1.2
1,043,741	-		DDA3937_RS04730	0.46	+0.4
1,043,741	-		DDA3937_RS04730	0.46	+1.6
1,043,741	-		DDA3937_RS04730	0.46	-0.4
1,043,870	+		DDA3937_RS04730	0.50	+0.0
1,043,870	+		DDA3937_RS04730	0.50	-0.5
1,043,871	-		DDA3937_RS04730	0.50	-0.8
1,043,871	-		DDA3937_RS04730	0.50	+1.4
1,043,916	+		DDA3937_RS04730	0.52	-0.4
1,043,916	+		DDA3937_RS04730	0.52	-0.6
1,043,916	+		DDA3937_RS04730	0.52	-0.4
1,043,916	+		DDA3937_RS04730	0.52	+0.7
1,043,917	-		DDA3937_RS04730	0.52	-1.2
1,043,917	-				+0.4
1,044,119	+		DDA3937_RS04730	0.58	-0.2
1,044,119	+		DDA3937_RS04730	0.58	-1.1
1,044,119	+		DDA3937_RS04730	0.58	-1.3
1,044,119	+		DDA3937_RS04730	0.58	+0.4
1,044,119	+		DDA3937_RS04730	0.58	+0.8
1,044,119	+		DDA3937_RS04730	0.58	+1.0
1,044,119	+		DDA3937_RS04730	0.58	-2.1
1,044,119	+		DDA3937_RS04730	0.58	+0.9
1,044,119	+		DDA3937_RS04730	0.58	-0.7
1,044,120	-		DDA3937_RS04730	0.58	-2.5
1,044,120	-		DDA3937_RS04730	0.58	-0.4
1,044,120	-		DDA3937_RS04730	0.58	-1.3
1,044,120	-		DDA3937_RS04730	0.58	-1.8
1,044,120	-				-0.2
1,044,120	-		DDA3937_RS04730	0.58	+0.8
1,044,120	-		DDA3937_RS04730	0.58	-0.4
1,044,120	-		DDA3937_RS04730	0.58	-0.8
1,044,120	-		DDA3937_RS04730	0.58	+3.3
1,044,146	+		DDA3937_RS04730	0.59	-0.6
1,044,146	+		DDA3937_RS04730	0.59	-2.3
1,044,146	+		DDA3937_RS04730	0.59	-0.7
1,044,147	-		DDA3937_RS04730	0.59	-1.0
1,044,151	-		DDA3937_RS04730	0.59	+0.6
1,044,214	-		DDA3937_RS04730	0.62	-2.4
1,044,328	+		DDA3937_RS04730	0.65	-0.2
1,044,328	+		DDA3937_RS04730	0.65	-0.9
1,044,328	+		DDA3937_RS04730	0.65	-0.0
1,044,328	+		DDA3937_RS04730	0.65	+0.2
1,044,329	-		DDA3937_RS04730	0.65	+1.0
1,044,329	-		DDA3937_RS04730	0.65	-2.3
1,044,332	+		DDA3937_RS04730	0.65	+0.9
1,044,363	+		DDA3937_RS04730	0.66	-1.3
1,044,363	+		DDA3937_RS04730	0.66	-0.6
1,044,561	+		DDA3937_RS04730	0.73	-1.9
1,044,908	+		DDA3937_RS04730	0.84	+0.7
1,044,908	+		DDA3937_RS04730	0.84	-1.0
1,044,909	-		DDA3937_RS04730	0.84	+0.8
1,044,909	-		DDA3937_RS04730	0.84	-2.1
1,045,024	-		DDA3937_RS04730	0.88	-1.3
1,045,134	+				-2.1
1,045,135	-				-1.4
1,045,256	-				-0.9
1,045,264	-				-1.3
1,045,284	-				-2.2
1,045,455	+				-0.2
1,045,455	+				-1.3
1,045,456	-				+1.4
1,045,468	+				-1.7
1,045,468	+				+0.4
1,045,468	+				-1.0
1,045,494	+				-0.9
1,045,495	-				+0.4
1,045,647	+		DDA3937_RS04735	0.15	+0.3
1,045,796	+		DDA3937_RS04735	0.27	-0.5
1,045,796	+		DDA3937_RS04735	0.27	-0.9
1,045,875	-		DDA3937_RS04735	0.33	-0.6
1,045,875	-		DDA3937_RS04735	0.33	-0.7
1,045,883	-		DDA3937_RS04735	0.34	-0.8
1,045,956	+		DDA3937_RS04735	0.40	-0.8
1,045,956	+		DDA3937_RS04735	0.40	-1.2
1,045,956	+		DDA3937_RS04735	0.40	-2.5
1,045,956	+		DDA3937_RS04735	0.40	-1.0
1,045,956	+		DDA3937_RS04735	0.40	-0.2
1,045,957	-		DDA3937_RS04735	0.40	+1.0
1,045,957	-		DDA3937_RS04735	0.40	-0.6
1,045,957	-		DDA3937_RS04735	0.40	-2.6
1,045,957	-		DDA3937_RS04735	0.40	-0.6
1,045,957	-		DDA3937_RS04735	0.40	+0.4
1,045,960	+		DDA3937_RS04735	0.40	+0.6
1,045,960	+		DDA3937_RS04735	0.40	-1.0
1,045,961	-		DDA3937_RS04735	0.40	+0.9
1,045,961	-		DDA3937_RS04735	0.40	-0.6
1,045,961	-		DDA3937_RS04735	0.40	-0.3
1,045,961	-		DDA3937_RS04735	0.40	-0.9
1,045,961	-		DDA3937_RS04735	0.40	-0.5
1,045,975	+		DDA3937_RS04735	0.41	+0.5
1,045,975	+		DDA3937_RS04735	0.41	+0.0
1,045,976	-		DDA3937_RS04735	0.41	-0.0
1,045,976	-		DDA3937_RS04735	0.41	-0.4
1,045,976	-		DDA3937_RS04735	0.41	+0.2
1,045,976	-		DDA3937_RS04735	0.41	+1.0
1,045,976	-		DDA3937_RS04735	0.41	-1.2
1,045,976	-		DDA3937_RS04735	0.41	+1.1
1,045,977	+				+2.4
1,045,977	+		DDA3937_RS04735	0.41	-0.6
1,045,977	+		DDA3937_RS04735	0.41	-2.1
1,045,977	+		DDA3937_RS04735	0.41	-1.0
1,045,977	+		DDA3937_RS04735	0.41	-1.5
1,045,977	+		DDA3937_RS04735	0.41	-1.0
1,045,977	+		DDA3937_RS04735	0.41	-1.1
1,045,977	+		DDA3937_RS04735	0.41	-1.8
1,045,977	+		DDA3937_RS04735	0.41	-1.2
1,045,977	+		DDA3937_RS04735	0.41	+0.1
1,045,977	+		DDA3937_RS04735	0.41	-2.2
1,045,977	+		DDA3937_RS04735	0.41	+3.3
1,045,977	+		DDA3937_RS04735	0.41	-1.4
1,045,977	+		DDA3937_RS04735	0.41	-0.4
1,045,977	+		DDA3937_RS04735	0.41	-0.2
1,045,977	+				+3.0
1,045,978	-		DDA3937_RS04735	0.42	+0.1
1,045,978	-		DDA3937_RS04735	0.42	-1.1
1,045,978	-		DDA3937_RS04735	0.42	+0.5
1,045,978	-		DDA3937_RS04735	0.42	-1.2
1,045,978	-		DDA3937_RS04735	0.42	-1.0
1,045,978	-		DDA3937_RS04735	0.42	-0.8
1,045,978	-		DDA3937_RS04735	0.42	+1.0
1,045,978	-		DDA3937_RS04735	0.42	-1.5
1,045,978	-		DDA3937_RS04735	0.42	-2.5
1,045,978	-		DDA3937_RS04735	0.42	-0.9
1,045,981	+		DDA3937_RS04735	0.42	-1.4
1,045,981	+		DDA3937_RS04735	0.42	+0.0
1,045,981	+		DDA3937_RS04735	0.42	+1.0
1,045,981	+		DDA3937_RS04735	0.42	-0.6
1,045,981	+		DDA3937_RS04735	0.42	-0.3
1,045,982	-				+0.4
1,045,982	-		DDA3937_RS04735	0.42	-1.0
1,045,982	-		DDA3937_RS04735	0.42	+0.7
1,045,982	-		DDA3937_RS04735	0.42	+0.2
1,045,982	-		DDA3937_RS04735	0.42	-0.5
1,045,982	-		DDA3937_RS04735	0.42	-1.5
1,045,982	-		DDA3937_RS04735	0.42	-0.7
1,045,983	+		DDA3937_RS04735	0.42	+0.6
1,045,983	+		DDA3937_RS04735	0.42	-2.1
1,045,983	+		DDA3937_RS04735	0.42	-1.4
1,045,983	+		DDA3937_RS04735	0.42	+3.0
1,045,983	+		DDA3937_RS04735	0.42	-0.6
1,045,983	+		DDA3937_RS04735	0.42	+1.8
1,045,983	+		DDA3937_RS04735	0.42	-1.1
1,045,983	+		DDA3937_RS04735	0.42	-0.0
1,045,983	+		DDA3937_RS04735	0.42	-0.1
1,045,983	+		DDA3937_RS04735	0.42	-1.6
1,045,983	+		DDA3937_RS04735	0.42	+1.3
1,045,983	+		DDA3937_RS04735	0.42	+0.0
1,045,983	+		DDA3937_RS04735	0.42	-0.6
1,045,984	-		DDA3937_RS04735	0.42	-1.6
1,045,984	-		DDA3937_RS04735	0.42	+2.2
1,045,984	-		DDA3937_RS04735	0.42	-3.2
1,045,984	-		DDA3937_RS04735	0.42	-0.0
1,045,984	-		DDA3937_RS04735	0.42	-0.4
1,045,984	-		DDA3937_RS04735	0.42	-0.0
1,045,984	-		DDA3937_RS04735	0.42	-0.9
1,045,984	-		DDA3937_RS04735	0.42	+0.2
1,045,984	-		DDA3937_RS04735	0.42	+0.7
1,045,984	-		DDA3937_RS04735	0.42	-0.2
1,045,984	-		DDA3937_RS04735	0.42	-1.6
1,045,984	-				+0.4
1,045,984	-		DDA3937_RS04735	0.42	+1.2
1,045,984	-		DDA3937_RS04735	0.42	-1.3
1,045,984	-		DDA3937_RS04735	0.42	-0.9
1,045,984	-		DDA3937_RS04735	0.42	-0.2
1,045,984	-		DDA3937_RS04735	0.42	-1.0
1,046,071	-		DDA3937_RS04735	0.49	+0.6
1,046,169	+		DDA3937_RS04735	0.57	-0.5
1,046,169	+		DDA3937_RS04735	0.57	+0.4
1,046,170	-		DDA3937_RS04735	0.57	-1.2
1,046,314	+		DDA3937_RS04735	0.68	-0.1