Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04495 and DDA3937_RS04500 are separated by 222 nucleotides DDA3937_RS04500 and DDA3937_RS04505 are separated by 163 nucleotides
DDA3937_RS04495: DDA3937_RS04495 - sulfate transporter CysZ, at 992,874 to 993,644
_RS04495
DDA3937_RS04500: DDA3937_RS04500 - cell division protein ZipA, at 993,867 to 994,793
_RS04500
DDA3937_RS04505: DDA3937_RS04505 - L-methionine/branched-chain amino acid transporter, at 994,957 to 996,213
_RS04505
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.967 kb on - strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.186 kb on + strand, within DDA3937_RS04495 at 993.193 kb on - strand, within DDA3937_RS04495 at 993.201 kb on + strand, within DDA3937_RS04495 at 993.202 kb on - strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.206 kb on - strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.524 kb on + strand, within DDA3937_RS04495 at 993.525 kb on - strand, within DDA3937_RS04495 at 993.598 kb on + strand at 993.598 kb on + strand at 993.598 kb on + strand at 993.599 kb on - strand at 993.637 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.667 kb on - strand at 993.667 kb on - strand at 993.685 kb on + strand at 993.708 kb on + strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.760 kb on - strand at 993.760 kb on - strand at 993.762 kb on + strand at 993.763 kb on - strand at 993.767 kb on + strand at 993.772 kb on + strand at 993.795 kb on + strand at 993.813 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.825 kb on + strand at 993.845 kb on + strand at 994.760 kb on + strand at 994.781 kb on + strand at 994.828 kb on + strand at 994.828 kb on + strand at 994.828 kb on + strand at 994.828 kb on + strand at 994.828 kb on + strand at 994.828 kb on + strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.829 kb on - strand at 994.834 kb on + strand at 994.835 kb on - strand at 994.868 kb on + strand at 994.968 kb on + strand at 994.968 kb on + strand at 994.971 kb on + strand at 994.972 kb on - strand at 994.972 kb on - strand at 994.976 kb on + strand at 995.133 kb on + strand, within DDA3937_RS04505 at 995.134 kb on - strand, within DDA3937_RS04505 at 995.237 kb on + strand, within DDA3937_RS04505 at 995.237 kb on + strand, within DDA3937_RS04505 at 995.469 kb on + strand, within DDA3937_RS04505 at 995.470 kb on - strand, within DDA3937_RS04505 at 995.509 kb on - strand, within DDA3937_RS04505 at 995.670 kb on + strand, within DDA3937_RS04505 at 995.670 kb on + strand, within DDA3937_RS04505 at 995.670 kb on + strand, within DDA3937_RS04505 at 995.670 kb on + strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.671 kb on - strand, within DDA3937_RS04505 at 995.791 kb on + strand, within DDA3937_RS04505
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 992,966 + DDA3937_RS04495 0.12 +0.1 992,966 + DDA3937_RS04495 0.12 +0.2 992,966 + DDA3937_RS04495 0.12 +1.0 992,967 - DDA3937_RS04495 0.12 -2.1 993,012 + DDA3937_RS04495 0.18 -1.6 993,012 + DDA3937_RS04495 0.18 +1.2 993,013 - DDA3937_RS04495 0.18 -2.7 993,013 - DDA3937_RS04495 0.18 -1.4 993,186 + DDA3937_RS04495 0.40 -0.3 993,193 - DDA3937_RS04495 0.41 -0.4 993,201 + DDA3937_RS04495 0.42 +2.6 993,202 - DDA3937_RS04495 0.43 +0.9 993,205 + DDA3937_RS04495 0.43 +0.6 993,205 + DDA3937_RS04495 0.43 -0.9 993,205 + DDA3937_RS04495 0.43 -1.0 993,206 - DDA3937_RS04495 0.43 +0.2 993,421 + DDA3937_RS04495 0.71 +0.7 993,421 + DDA3937_RS04495 0.71 -1.3 993,524 + DDA3937_RS04495 0.84 +0.3 993,525 - DDA3937_RS04495 0.84 +0.6 993,598 + +1.5 993,598 + -1.2 993,598 + -0.4 993,599 - -1.2 993,637 + -0.1 993,661 + +1.6 993,661 + -0.6 993,661 + -1.5 993,661 + -0.1 993,662 - -0.9 993,662 - -0.4 993,662 - +0.2 993,667 - -1.2 993,667 - +0.8 993,685 + +0.1 993,708 + -1.7 993,709 - -1.2 993,709 - +3.0 993,709 - -1.2 993,760 - -1.4 993,760 - -0.0 993,762 + +0.5 993,763 - -1.6 993,767 + -3.1 993,772 + +0.4 993,795 + -0.5 993,813 + -1.9 993,819 + -1.3 993,819 + +0.8 993,819 + -0.2 993,819 + -0.9 993,819 + -0.9 993,819 + -0.9 993,819 + +0.4 993,819 + +0.9 993,825 + -2.5 993,845 + -0.6 994,760 + -0.2 994,781 + -0.6 994,828 + +0.0 994,828 + -1.1 994,828 + +0.4 994,828 + -1.4 994,828 + -0.6 994,828 + -1.4 994,829 - -2.3 994,829 - -1.2 994,829 - -0.6 994,829 - -1.4 994,829 - -2.0 994,829 - -0.2 994,829 - -1.4 994,834 + +0.7 994,835 - -0.2 994,868 + -3.1 994,968 + +2.0 994,968 + -2.4 994,971 + +0.3 994,972 - -1.3 994,972 - -0.2 994,976 + -0.5 995,133 + DDA3937_RS04505 0.14 -1.3 995,134 - DDA3937_RS04505 0.14 +0.3 995,237 + DDA3937_RS04505 0.22 -2.6 995,237 + DDA3937_RS04505 0.22 -0.7 995,469 + DDA3937_RS04505 0.41 -1.6 995,470 - DDA3937_RS04505 0.41 -0.8 995,509 - DDA3937_RS04505 0.44 -1.3 995,670 + DDA3937_RS04505 0.57 +0.2 995,670 + DDA3937_RS04505 0.57 -0.9 995,670 + DDA3937_RS04505 0.57 -1.1 995,670 + DDA3937_RS04505 0.57 -0.4 995,671 - DDA3937_RS04505 0.57 +0.2 995,671 - DDA3937_RS04505 0.57 -1.2 995,671 - DDA3937_RS04505 0.57 -0.2 995,671 - DDA3937_RS04505 0.57 -0.7 995,671 - DDA3937_RS04505 0.57 +0.2 995,671 - DDA3937_RS04505 0.57 -0.9 995,791 + DDA3937_RS04505 0.66 -1.4
Or see this region's nucleotide sequence