Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04065

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS21905 and DDA3937_RS04065 are separated by 637 nucleotidesDDA3937_RS04065 and DDA3937_RS04070 are separated by 300 nucleotidesDDA3937_RS04070 and DDA3937_RS21910 are separated by 92 nucleotidesDDA3937_RS21910 and DDA3937_RS04080 are separated by 102 nucleotides DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039 _RS21905 DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078 _RS04065 DDA3937_RS04070: DDA3937_RS04070 - helix-turn-helix transcriptional regulator, at 905,379 to 905,597 _RS04070 DDA3937_RS21910: DDA3937_RS21910 - helix-turn-helix transcriptional regulator, at 905,690 to 905,920 _RS21910 DDA3937_RS04080: DDA3937_RS04080 - helix-turn-helix domain-containing protein, at 906,023 to 906,268 _RS04080 Position (kb) 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 903.687 kb on + strand, within DDA3937_RS21905at 903.687 kb on + strand, within DDA3937_RS21905at 903.687 kb on + strand, within DDA3937_RS21905at 903.688 kb on - strand, within DDA3937_RS21905at 903.696 kb on + strand, within DDA3937_RS21905at 903.697 kb on - strand, within DDA3937_RS21905at 903.724 kb on + strand, within DDA3937_RS21905at 903.738 kb on + strand, within DDA3937_RS21905at 903.751 kb on - strand, within DDA3937_RS21905at 903.755 kb on - strand, within DDA3937_RS21905at 903.802 kb on + strand, within DDA3937_RS21905at 903.828 kb on + strand, within DDA3937_RS21905at 903.843 kb on + strand, within DDA3937_RS21905at 903.885 kb on + strand, within DDA3937_RS21905at 903.885 kb on + strand, within DDA3937_RS21905at 903.921 kb on - strand, within DDA3937_RS21905at 903.925 kb on + strand, within DDA3937_RS21905at 903.927 kb on + strand, within DDA3937_RS21905at 903.928 kb on - strand, within DDA3937_RS21905at 903.928 kb on - strand, within DDA3937_RS21905at 903.979 kb on - strand, within DDA3937_RS21905at 904.070 kb on + strandat 904.133 kb on + strandat 904.134 kb on - strandat 904.145 kb on - strandat 904.151 kb on - strandat 904.226 kb on - strandat 904.293 kb on + strandat 904.324 kb on - strandat 904.339 kb on + strandat 904.339 kb on + strandat 904.340 kb on - strandat 904.343 kb on + strandat 904.382 kb on - strandat 904.382 kb on - strandat 904.414 kb on + strandat 904.444 kb on + strandat 904.558 kb on + strandat 904.558 kb on + strandat 904.558 kb on + strandat 904.579 kb on - strandat 904.650 kb on + strandat 904.651 kb on - strandat 905.392 kb on - strandat 905.538 kb on + strand, within DDA3937_RS04070at 905.589 kb on - strandat 905.657 kb on + strandat 905.657 kb on + strandat 905.657 kb on + strandat 905.658 kb on - strandat 905.658 kb on - strandat 905.708 kb on + strandat 905.752 kb on + strand, within DDA3937_RS21910at 905.752 kb on + strand, within DDA3937_RS21910at 905.753 kb on - strand, within DDA3937_RS21910at 905.753 kb on - strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.925 kb on + strandat 905.925 kb on + strandat 905.926 kb on - strandat 906.022 kb on + strandat 906.023 kb on - strandat 906.066 kb on + strand, within DDA3937_RS04080at 906.067 kb on - strand, within DDA3937_RS04080at 906.067 kb on - strand, within DDA3937_RS04080

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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903,687 + DDA3937_RS21905 0.31 +0.7
903,687 + DDA3937_RS21905 0.31 -1.1
903,687 + DDA3937_RS21905 0.31 -0.4
903,688 - DDA3937_RS21905 0.31 -0.4
903,696 + DDA3937_RS21905 0.33 +0.9
903,697 - DDA3937_RS21905 0.33 -3.2
903,724 + DDA3937_RS21905 0.38 +2.0
903,738 + DDA3937_RS21905 0.41 -2.2
903,751 - DDA3937_RS21905 0.44 -1.7
903,755 - DDA3937_RS21905 0.44 -0.8
903,802 + DDA3937_RS21905 0.54 +1.4
903,828 + DDA3937_RS21905 0.59 +0.7
903,843 + DDA3937_RS21905 0.62 -2.2
903,885 + DDA3937_RS21905 0.70 +1.0
903,885 + DDA3937_RS21905 0.70 +1.4
903,921 - DDA3937_RS21905 0.77 -0.7
903,925 + DDA3937_RS21905 0.78 +0.1
903,927 + DDA3937_RS21905 0.78 -2.5
903,928 - DDA3937_RS21905 0.78 +0.4
903,928 - DDA3937_RS21905 0.78 -0.5
903,979 - DDA3937_RS21905 0.88 +0.2
904,070 + -0.5
904,133 + -1.7
904,134 - +0.1
904,145 - -0.4
904,151 - -2.4
904,226 - -1.7
904,293 + -0.5
904,324 - -0.2
904,339 + -0.7
904,339 + -1.5
904,340 - +0.4
904,343 + -0.6
904,382 - -1.2
904,382 - -0.9
904,414 + +0.1
904,444 + -0.6
904,558 + +0.1
904,558 + -0.3
904,558 + +0.5
904,579 - -0.5
904,650 + -2.6
904,651 - -0.5
905,392 - +2.4
905,538 + DDA3937_RS04070 0.73 +0.3
905,589 - -0.2
905,657 + -0.7
905,657 + -1.6
905,657 + -2.0
905,658 - +0.0
905,658 - +0.2
905,708 + -1.2
905,752 + DDA3937_RS21910 0.27 +0.6
905,752 + DDA3937_RS21910 0.27 +1.0
905,753 - DDA3937_RS21910 0.27 -1.9
905,753 - DDA3937_RS21910 0.27 -2.2
905,754 + DDA3937_RS21910 0.28 -0.6
905,754 + DDA3937_RS21910 0.28 +3.3
905,754 + DDA3937_RS21910 0.28 +0.8
905,754 + DDA3937_RS21910 0.28 -0.9
905,754 + DDA3937_RS21910 0.28 +1.4
905,754 + DDA3937_RS21910 0.28 +1.4
905,755 - DDA3937_RS21910 0.28 -0.8
905,755 - DDA3937_RS21910 0.28 -0.7
905,755 - DDA3937_RS21910 0.28 -3.3
905,755 - DDA3937_RS21910 0.28 -0.6
905,755 - DDA3937_RS21910 0.28 -1.4
905,805 + DDA3937_RS21910 0.50 -1.1
905,805 + DDA3937_RS21910 0.50 -0.6
905,805 + DDA3937_RS21910 0.50 +0.1
905,805 + DDA3937_RS21910 0.50 -0.6
905,805 + DDA3937_RS21910 0.50 +0.6
905,806 - DDA3937_RS21910 0.50 +0.6
905,806 - DDA3937_RS21910 0.50 +1.7
905,806 - DDA3937_RS21910 0.50 -1.2
905,925 + -0.0
905,925 + -0.2
905,926 - -0.7
906,022 + -2.0
906,023 - -1.6
906,066 + DDA3937_RS04080 0.17 -1.0
906,067 - DDA3937_RS04080 0.18 +0.9
906,067 - DDA3937_RS04080 0.18 +0.8

Or see this region's nucleotide sequence