Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03980

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03970 and DDA3937_RS03975 are separated by 139 nucleotidesDDA3937_RS03975 and DDA3937_RS03980 are separated by 175 nucleotidesDDA3937_RS03980 and DDA3937_RS21900 are separated by 36 nucleotidesDDA3937_RS21900 and DDA3937_RS03985 are separated by 217 nucleotides DDA3937_RS03970: DDA3937_RS03970 - helix-turn-helix transcriptional regulator, at 887,755 to 888,093 _RS03970 DDA3937_RS03975: DDA3937_RS03975 - helix-turn-helix domain-containing protein, at 888,233 to 888,538 _RS03975 DDA3937_RS03980: DDA3937_RS03980 - LysR family transcriptional regulator, at 888,714 to 889,628 _RS03980 DDA3937_RS21900: DDA3937_RS21900 - entry exclusion lipoprotein TrbK, at 889,665 to 889,913 _RS21900 DDA3937_RS03985: DDA3937_RS03985 - conjugal transfer protein TraG, at 890,131 to 892,086 _RS03985 Position (kb) 888 889 890Strain fitness (log2 ratio) -2 -1 0 1 2 3at 887.714 kb on + strandat 887.714 kb on + strandat 887.718 kb on + strandat 887.718 kb on + strandat 887.718 kb on + strandat 887.718 kb on + strandat 887.719 kb on - strandat 887.741 kb on - strandat 887.825 kb on + strand, within DDA3937_RS03970at 887.826 kb on - strand, within DDA3937_RS03970at 887.864 kb on + strand, within DDA3937_RS03970at 887.865 kb on - strand, within DDA3937_RS03970at 887.870 kb on + strand, within DDA3937_RS03970at 887.870 kb on + strand, within DDA3937_RS03970at 887.870 kb on + strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.871 kb on - strand, within DDA3937_RS03970at 887.946 kb on - strand, within DDA3937_RS03970at 888.013 kb on + strand, within DDA3937_RS03970at 888.013 kb on + strand, within DDA3937_RS03970at 888.030 kb on + strand, within DDA3937_RS03970at 888.031 kb on - strand, within DDA3937_RS03970at 888.076 kb on + strandat 888.076 kb on + strandat 888.077 kb on - strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.094 kb on + strandat 888.095 kb on - strandat 888.095 kb on - strandat 888.095 kb on - strandat 888.095 kb on - strandat 888.095 kb on - strandat 888.386 kb on - strand, within DDA3937_RS03975at 888.386 kb on - strand, within DDA3937_RS03975at 888.574 kb on + strandat 888.574 kb on + strandat 888.574 kb on + strandat 888.574 kb on + strandat 888.574 kb on + strandat 888.575 kb on - strandat 888.575 kb on - strandat 888.576 kb on + strandat 888.576 kb on + strandat 888.576 kb on + strandat 888.576 kb on + strandat 888.576 kb on + strandat 888.577 kb on - strandat 888.577 kb on - strandat 888.577 kb on - strandat 888.607 kb on + strandat 888.607 kb on + strandat 888.638 kb on - strandat 888.650 kb on + strandat 888.650 kb on + strandat 888.650 kb on + strandat 888.651 kb on - strandat 888.651 kb on - strandat 888.651 kb on - strandat 888.651 kb on - strandat 888.735 kb on + strandat 888.736 kb on - strandat 888.791 kb on + strandat 888.792 kb on - strandat 888.821 kb on + strand, within DDA3937_RS03980at 888.822 kb on - strand, within DDA3937_RS03980at 888.859 kb on + strand, within DDA3937_RS03980at 888.860 kb on - strand, within DDA3937_RS03980at 888.860 kb on - strand, within DDA3937_RS03980at 888.901 kb on + strand, within DDA3937_RS03980at 888.979 kb on - strand, within DDA3937_RS03980at 889.014 kb on - strandat 889.014 kb on - strand, within DDA3937_RS03980at 889.016 kb on + strandat 889.076 kb on + strand, within DDA3937_RS03980at 889.134 kb on + strand, within DDA3937_RS03980at 889.134 kb on + strand, within DDA3937_RS03980at 889.135 kb on - strand, within DDA3937_RS03980at 889.135 kb on - strand, within DDA3937_RS03980at 889.135 kb on - strand, within DDA3937_RS03980at 889.135 kb on - strand, within DDA3937_RS03980at 889.178 kb on + strand, within DDA3937_RS03980at 889.178 kb on + strand, within DDA3937_RS03980at 889.179 kb on - strand, within DDA3937_RS03980at 889.179 kb on - strand, within DDA3937_RS03980at 889.246 kb on - strand, within DDA3937_RS03980at 889.306 kb on + strand, within DDA3937_RS03980at 889.306 kb on + strand, within DDA3937_RS03980at 889.306 kb on + strand, within DDA3937_RS03980at 889.307 kb on - strand, within DDA3937_RS03980at 889.307 kb on - strand, within DDA3937_RS03980at 889.307 kb on - strand, within DDA3937_RS03980at 889.451 kb on + strand, within DDA3937_RS03980at 889.452 kb on - strand, within DDA3937_RS03980at 889.521 kb on + strand, within DDA3937_RS03980at 889.521 kb on + strand, within DDA3937_RS03980at 889.521 kb on + strand, within DDA3937_RS03980at 889.521 kb on + strand, within DDA3937_RS03980at 889.521 kb on + strand, within DDA3937_RS03980at 889.522 kb on - strand, within DDA3937_RS03980at 889.522 kb on - strand, within DDA3937_RS03980at 889.659 kb on - strandat 889.665 kb on - strandat 889.742 kb on - strand, within DDA3937_RS21900at 889.742 kb on - strand, within DDA3937_RS21900at 889.750 kb on + strand, within DDA3937_RS21900at 889.750 kb on + strand, within DDA3937_RS21900at 889.772 kb on - strand, within DDA3937_RS21900at 889.881 kb on + strand, within DDA3937_RS21900at 890.002 kb on - strandat 890.003 kb on + strandat 890.003 kb on + strandat 890.004 kb on - strandat 890.092 kb on + strandat 890.147 kb on + strandat 890.153 kb on + strandat 890.154 kb on - strandat 890.200 kb on + strandat 890.285 kb on - strandat 890.329 kb on + strand, within DDA3937_RS03985at 890.449 kb on + strand, within DDA3937_RS03985at 890.481 kb on + strand, within DDA3937_RS03985at 890.501 kb on - strand, within DDA3937_RS03985at 890.532 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
887,714 + -0.2
887,714 + -0.4
887,718 + -1.2
887,718 + -0.0
887,718 + -0.7
887,718 + +1.2
887,719 - -1.6
887,741 - -0.2
887,825 + DDA3937_RS03970 0.21 -1.3
887,826 - DDA3937_RS03970 0.21 -1.2
887,864 + DDA3937_RS03970 0.32 +1.0
887,865 - DDA3937_RS03970 0.32 -2.7
887,870 + DDA3937_RS03970 0.34 -1.7
887,870 + DDA3937_RS03970 0.34 +0.2
887,870 + DDA3937_RS03970 0.34 -0.8
887,871 - DDA3937_RS03970 0.34 -0.3
887,871 - DDA3937_RS03970 0.34 +0.0
887,871 - DDA3937_RS03970 0.34 -0.3
887,871 - DDA3937_RS03970 0.34 -1.7
887,871 - DDA3937_RS03970 0.34 +1.2
887,871 - DDA3937_RS03970 0.34 -0.3
887,946 - DDA3937_RS03970 0.56 +1.2
888,013 + DDA3937_RS03970 0.76 -1.6
888,013 + DDA3937_RS03970 0.76 -0.5
888,030 + DDA3937_RS03970 0.81 -0.8
888,031 - DDA3937_RS03970 0.81 -0.4
888,076 + -0.6
888,076 + -0.1
888,077 - +1.5
888,094 + -0.2
888,094 + -0.2
888,094 + +0.8
888,094 + -0.0
888,094 + -1.8
888,094 + -0.3
888,094 + +0.9
888,095 - -1.7
888,095 - -0.3
888,095 - -0.1
888,095 - -0.4
888,095 - +0.4
888,386 - DDA3937_RS03975 0.50 +0.2
888,386 - DDA3937_RS03975 0.50 +3.4
888,574 + -0.8
888,574 + +0.7
888,574 + -0.3
888,574 + +0.4
888,574 + +1.4
888,575 - -0.6
888,575 - -0.3
888,576 + -1.1
888,576 + -0.4
888,576 + +0.9
888,576 + -0.9
888,576 + -0.2
888,577 - +1.0
888,577 - +1.4
888,577 - +1.6
888,607 + -1.4
888,607 + -0.9
888,638 - -0.0
888,650 + +0.5
888,650 + +0.4
888,650 + +1.6
888,651 - +0.9
888,651 - +1.2
888,651 - -0.4
888,651 - -2.3
888,735 + -0.8
888,736 - +0.7
888,791 + +1.4
888,792 - -0.3
888,821 + DDA3937_RS03980 0.12 -2.4
888,822 - DDA3937_RS03980 0.12 -0.5
888,859 + DDA3937_RS03980 0.16 -0.5
888,860 - DDA3937_RS03980 0.16 -0.5
888,860 - DDA3937_RS03980 0.16 -0.6
888,901 + DDA3937_RS03980 0.20 -2.0
888,979 - DDA3937_RS03980 0.29 -1.7
889,014 - +1.4
889,014 - DDA3937_RS03980 0.33 +1.0
889,016 + +0.4
889,076 + DDA3937_RS03980 0.40 -1.4
889,134 + DDA3937_RS03980 0.46 -1.0
889,134 + DDA3937_RS03980 0.46 -2.2
889,135 - DDA3937_RS03980 0.46 -0.3
889,135 - DDA3937_RS03980 0.46 -0.4
889,135 - DDA3937_RS03980 0.46 -0.2
889,135 - DDA3937_RS03980 0.46 +1.4
889,178 + DDA3937_RS03980 0.51 -1.0
889,178 + DDA3937_RS03980 0.51 +0.7
889,179 - DDA3937_RS03980 0.51 -1.0
889,179 - DDA3937_RS03980 0.51 -0.7
889,246 - DDA3937_RS03980 0.58 -0.6
889,306 + DDA3937_RS03980 0.65 +1.2
889,306 + DDA3937_RS03980 0.65 -1.6
889,306 + DDA3937_RS03980 0.65 +1.4
889,307 - DDA3937_RS03980 0.65 -1.2
889,307 - DDA3937_RS03980 0.65 +1.2
889,307 - DDA3937_RS03980 0.65 -0.4
889,451 + DDA3937_RS03980 0.81 -0.7
889,452 - DDA3937_RS03980 0.81 +0.0
889,521 + DDA3937_RS03980 0.88 +0.3
889,521 + DDA3937_RS03980 0.88 -0.7
889,521 + DDA3937_RS03980 0.88 -1.6
889,521 + DDA3937_RS03980 0.88 -0.3
889,521 + DDA3937_RS03980 0.88 -0.4
889,522 - DDA3937_RS03980 0.88 -0.4
889,522 - DDA3937_RS03980 0.88 -0.3
889,659 - -0.3
889,665 - +0.2
889,742 - DDA3937_RS21900 0.31 -1.0
889,742 - DDA3937_RS21900 0.31 -0.7
889,750 + DDA3937_RS21900 0.34 -0.5
889,750 + DDA3937_RS21900 0.34 +0.2
889,772 - DDA3937_RS21900 0.43 +0.4
889,881 + DDA3937_RS21900 0.87 +1.2
890,002 - -1.4
890,003 + -1.9
890,003 + +0.2
890,004 - -0.4
890,092 + +1.4
890,147 + +1.9
890,153 + -0.2
890,154 - -0.4
890,200 + +0.2
890,285 - +0.1
890,329 + DDA3937_RS03985 0.10 -0.7
890,449 + DDA3937_RS03985 0.16 -1.4
890,481 + DDA3937_RS03985 0.18 -0.3
890,501 - DDA3937_RS03985 0.19 +2.3
890,532 + -0.6

Or see this region's nucleotide sequence