Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03525

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03515 and DDA3937_RS03520 are separated by 42 nucleotidesDDA3937_RS03520 and DDA3937_RS03525 are separated by 148 nucleotidesDDA3937_RS03525 and DDA3937_RS03530 are separated by 4 nucleotides DDA3937_RS03515: DDA3937_RS03515 - ATP-binding cassette domain-containing protein, at 773,604 to 774,467 _RS03515 DDA3937_RS03520: DDA3937_RS03520 - ABC transporter ATP-binding protein, at 774,510 to 775,283 _RS03520 DDA3937_RS03525: DDA3937_RS03525 - sigma-70 family RNA polymerase sigma factor, at 775,432 to 775,968 _RS03525 DDA3937_RS03530: DDA3937_RS03530 - DUF4880 domain-containing protein, at 775,973 to 776,926 _RS03530 Position (kb) 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.477 kb on - strandat 774.477 kb on - strandat 774.477 kb on - strandat 774.573 kb on + strandat 774.573 kb on + strandat 774.573 kb on + strandat 774.573 kb on + strandat 774.573 kb on + strandat 774.574 kb on - strandat 774.574 kb on - strandat 774.574 kb on - strandat 774.574 kb on - strandat 774.574 kb on - strandat 774.574 kb on - strandat 774.580 kb on + strandat 774.581 kb on - strandat 774.581 kb on - strandat 774.694 kb on + strand, within DDA3937_RS03520at 774.695 kb on - strand, within DDA3937_RS03520at 774.695 kb on - strand, within DDA3937_RS03520at 774.695 kb on - strand, within DDA3937_RS03520at 774.760 kb on + strand, within DDA3937_RS03520at 774.761 kb on - strand, within DDA3937_RS03520at 774.830 kb on - strand, within DDA3937_RS03520at 774.866 kb on + strand, within DDA3937_RS03520at 774.871 kb on + strand, within DDA3937_RS03520at 775.083 kb on + strand, within DDA3937_RS03520at 775.083 kb on + strand, within DDA3937_RS03520at 775.084 kb on - strand, within DDA3937_RS03520at 775.084 kb on - strand, within DDA3937_RS03520at 775.084 kb on - strand, within DDA3937_RS03520at 775.149 kb on + strand, within DDA3937_RS03520at 775.150 kb on - strand, within DDA3937_RS03520at 775.158 kb on - strand, within DDA3937_RS03520at 775.196 kb on + strand, within DDA3937_RS03520at 775.197 kb on - strandat 775.214 kb on + strandat 775.215 kb on - strandat 775.215 kb on - strandat 775.245 kb on + strandat 775.245 kb on + strandat 775.246 kb on - strandat 775.246 kb on - strandat 775.282 kb on - strandat 775.310 kb on + strandat 775.310 kb on + strandat 775.310 kb on + strandat 775.310 kb on + strandat 775.311 kb on - strandat 775.311 kb on - strandat 775.311 kb on - strandat 775.313 kb on + strandat 775.314 kb on - strandat 775.348 kb on - strandat 775.507 kb on + strand, within DDA3937_RS03525at 775.507 kb on + strand, within DDA3937_RS03525at 775.507 kb on + strand, within DDA3937_RS03525at 775.508 kb on - strand, within DDA3937_RS03525at 775.873 kb on + strand, within DDA3937_RS03525at 775.873 kb on + strand, within DDA3937_RS03525at 775.874 kb on - strand, within DDA3937_RS03525at 775.874 kb on - strand, within DDA3937_RS03525at 775.924 kb on + strandat 775.924 kb on + strandat 775.925 kb on - strandat 776.006 kb on + strandat 776.006 kb on + strandat 776.006 kb on + strandat 776.006 kb on + strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.007 kb on - strandat 776.033 kb on + strandat 776.259 kb on + strand, within DDA3937_RS03530at 776.259 kb on + strand, within DDA3937_RS03530at 776.259 kb on + strand, within DDA3937_RS03530at 776.260 kb on - strand, within DDA3937_RS03530at 776.260 kb on - strand, within DDA3937_RS03530at 776.260 kb on - strand, within DDA3937_RS03530at 776.260 kb on - strand, within DDA3937_RS03530at 776.264 kb on + strandat 776.265 kb on - strand, within DDA3937_RS03530at 776.285 kb on + strand, within DDA3937_RS03530at 776.286 kb on - strand, within DDA3937_RS03530at 776.458 kb on + strand, within DDA3937_RS03530at 776.458 kb on + strand, within DDA3937_RS03530at 776.527 kb on + strand, within DDA3937_RS03530at 776.527 kb on + strand, within DDA3937_RS03530at 776.528 kb on - strand, within DDA3937_RS03530at 776.528 kb on - strand, within DDA3937_RS03530at 776.573 kb on + strand, within DDA3937_RS03530at 776.573 kb on + strand, within DDA3937_RS03530at 776.574 kb on - strand, within DDA3937_RS03530at 776.636 kb on + strand, within DDA3937_RS03530at 776.636 kb on + strand, within DDA3937_RS03530at 776.637 kb on - strand, within DDA3937_RS03530at 776.873 kb on - strandat 776.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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774,477 - -1.6
774,477 - -3.1
774,477 - -1.7
774,573 + +1.0
774,573 + +2.0
774,573 + -2.6
774,573 + +0.3
774,573 + -1.5
774,574 - +0.4
774,574 - +0.6
774,574 - -0.3
774,574 - +2.2
774,574 - -1.0
774,574 - -1.4
774,580 + -1.1
774,581 - +0.4
774,581 - -0.1
774,694 + DDA3937_RS03520 0.24 -0.9
774,695 - DDA3937_RS03520 0.24 -1.8
774,695 - DDA3937_RS03520 0.24 -0.6
774,695 - DDA3937_RS03520 0.24 -0.6
774,760 + DDA3937_RS03520 0.32 +0.4
774,761 - DDA3937_RS03520 0.32 -0.4
774,830 - DDA3937_RS03520 0.41 -1.0
774,866 + DDA3937_RS03520 0.46 +0.9
774,871 + DDA3937_RS03520 0.47 -0.6
775,083 + DDA3937_RS03520 0.74 -1.0
775,083 + DDA3937_RS03520 0.74 +0.1
775,084 - DDA3937_RS03520 0.74 -1.6
775,084 - DDA3937_RS03520 0.74 +0.1
775,084 - DDA3937_RS03520 0.74 -1.7
775,149 + DDA3937_RS03520 0.83 -0.9
775,150 - DDA3937_RS03520 0.83 -0.8
775,158 - DDA3937_RS03520 0.84 -0.1
775,196 + DDA3937_RS03520 0.89 +0.5
775,197 - +0.4
775,214 + +0.9
775,215 - +0.4
775,215 - +0.8
775,245 + -0.4
775,245 + +1.4
775,246 - -0.4
775,246 - -1.7
775,282 - +0.3
775,310 + -1.5
775,310 + -1.1
775,310 + -2.6
775,310 + +0.6
775,311 - -1.1
775,311 - -1.1
775,311 - -0.4
775,313 + -0.6
775,314 - -0.1
775,348 - -0.3
775,507 + DDA3937_RS03525 0.14 -0.6
775,507 + DDA3937_RS03525 0.14 +0.4
775,507 + DDA3937_RS03525 0.14 +1.1
775,508 - DDA3937_RS03525 0.14 +2.1
775,873 + DDA3937_RS03525 0.82 +0.5
775,873 + DDA3937_RS03525 0.82 -0.6
775,874 - DDA3937_RS03525 0.82 -0.2
775,874 - DDA3937_RS03525 0.82 -0.3
775,924 + -1.4
775,924 + -0.6
775,925 - -0.7
776,006 + +0.4
776,006 + +0.5
776,006 + +1.0
776,006 + -0.8
776,007 - -1.9
776,007 - -0.4
776,007 - -0.5
776,007 - +0.5
776,007 - -0.1
776,007 - -0.3
776,007 - +0.6
776,033 + -0.6
776,259 + DDA3937_RS03530 0.30 +1.7
776,259 + DDA3937_RS03530 0.30 -0.9
776,259 + DDA3937_RS03530 0.30 -0.0
776,260 - DDA3937_RS03530 0.30 -1.6
776,260 - DDA3937_RS03530 0.30 -0.3
776,260 - DDA3937_RS03530 0.30 +0.7
776,260 - DDA3937_RS03530 0.30 -0.1
776,264 + +2.4
776,265 - DDA3937_RS03530 0.31 +0.9
776,285 + DDA3937_RS03530 0.33 -1.6
776,286 - DDA3937_RS03530 0.33 -1.6
776,458 + DDA3937_RS03530 0.51 -0.3
776,458 + DDA3937_RS03530 0.51 -0.6
776,527 + DDA3937_RS03530 0.58 +0.3
776,527 + DDA3937_RS03530 0.58 -0.7
776,528 - DDA3937_RS03530 0.58 +0.2
776,528 - DDA3937_RS03530 0.58 -0.1
776,573 + DDA3937_RS03530 0.63 +0.4
776,573 + DDA3937_RS03530 0.63 -0.0
776,574 - DDA3937_RS03530 0.63 -1.1
776,636 + DDA3937_RS03530 0.69 -2.3
776,636 + DDA3937_RS03530 0.69 -2.3
776,637 - DDA3937_RS03530 0.70 +0.5
776,873 - -1.0
776,968 + -1.8

Or see this region's nucleotide sequence