Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02895 and DDA3937_RS02900 are separated by 280 nucleotides DDA3937_RS02900 and DDA3937_RS02905 are separated by 668 nucleotides
DDA3937_RS02895: DDA3937_RS02895 - 2-isopropylmalate synthase, at 639,141 to 640,835
_RS02895
DDA3937_RS02900: DDA3937_RS02900 - helix-turn-helix transcriptional regulator, at 641,116 to 641,919
_RS02900
DDA3937_RS02905: DDA3937_RS02905 - flavocytochrome c, at 642,588 to 645,358
_RS02905
Position (kb) 641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.178 kb on + strand, within DDA3937_RS02895 at 640.185 kb on - strand, within DDA3937_RS02895 at 640.316 kb on - strand, within DDA3937_RS02895 at 640.453 kb on + strand, within DDA3937_RS02895 at 640.453 kb on + strand, within DDA3937_RS02895 at 640.454 kb on - strand, within DDA3937_RS02895 at 640.461 kb on + strand, within DDA3937_RS02895 at 640.462 kb on - strand, within DDA3937_RS02895 at 640.462 kb on - strand, within DDA3937_RS02895 at 640.588 kb on - strand, within DDA3937_RS02895 at 640.650 kb on + strand, within DDA3937_RS02895 at 640.650 kb on + strand, within DDA3937_RS02895 at 640.723 kb on - strand at 640.723 kb on - strand at 640.760 kb on + strand at 640.761 kb on - strand at 640.761 kb on - strand at 640.974 kb on + strand at 640.975 kb on - strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 641.012 kb on + strand at 641.012 kb on + strand at 641.012 kb on + strand at 641.013 kb on - strand at 641.013 kb on - strand at 641.013 kb on - strand at 641.032 kb on - strand at 641.043 kb on + strand at 641.044 kb on - strand at 641.064 kb on - strand at 641.067 kb on + strand at 641.068 kb on - strand at 641.107 kb on + strand at 641.189 kb on + strand at 641.190 kb on - strand at 641.190 kb on - strand at 641.263 kb on + strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.363 kb on + strand, within DDA3937_RS02900 at 641.363 kb on + strand, within DDA3937_RS02900 at 641.364 kb on - strand, within DDA3937_RS02900 at 641.589 kb on - strand, within DDA3937_RS02900 at 641.671 kb on - strand, within DDA3937_RS02900 at 641.703 kb on + strand, within DDA3937_RS02900 at 641.792 kb on + strand, within DDA3937_RS02900 at 641.840 kb on - strand at 641.857 kb on + strand at 641.858 kb on - strand at 641.858 kb on - strand at 641.858 kb on - strand at 641.858 kb on - strand at 641.871 kb on + strand at 641.871 kb on + strand at 641.871 kb on + strand at 641.872 kb on - strand at 641.872 kb on - strand at 641.872 kb on - strand at 641.872 kb on - strand at 641.901 kb on - strand at 641.901 kb on - strand at 641.901 kb on - strand at 641.917 kb on + strand at 641.917 kb on + strand at 641.917 kb on + strand at 642.018 kb on + strand at 642.018 kb on + strand at 642.018 kb on + strand at 642.018 kb on + strand at 642.018 kb on + strand at 642.037 kb on + strand at 642.037 kb on + strand at 642.095 kb on - strand at 642.114 kb on + strand at 642.114 kb on + strand at 642.150 kb on + strand at 642.191 kb on - strand at 642.411 kb on - strand at 642.427 kb on + strand at 642.428 kb on - strand at 642.487 kb on + strand at 642.491 kb on - strand at 642.558 kb on - strand at 642.569 kb on - strand at 642.587 kb on + strand at 642.587 kb on + strand at 642.588 kb on - strand at 642.596 kb on + strand at 642.620 kb on + strand at 642.690 kb on + strand at 642.690 kb on + strand at 642.723 kb on + strand at 642.723 kb on + strand at 642.724 kb on - strand at 642.724 kb on - strand at 642.901 kb on - strand, within DDA3937_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 640,178 + DDA3937_RS02895 0.61 -0.8 640,185 - DDA3937_RS02895 0.62 -2.2 640,316 - DDA3937_RS02895 0.69 +0.6 640,453 + DDA3937_RS02895 0.77 -0.8 640,453 + DDA3937_RS02895 0.77 +1.0 640,454 - DDA3937_RS02895 0.77 +0.5 640,461 + DDA3937_RS02895 0.78 -0.7 640,462 - DDA3937_RS02895 0.78 +0.6 640,462 - DDA3937_RS02895 0.78 -3.0 640,588 - DDA3937_RS02895 0.85 -0.5 640,650 + DDA3937_RS02895 0.89 -0.1 640,650 + DDA3937_RS02895 0.89 -0.6 640,723 - -2.0 640,723 - -0.8 640,760 + -2.8 640,761 - +1.2 640,761 - -0.3 640,974 + -0.5 640,975 - -1.7 640,997 + +0.3 640,997 + -0.7 640,997 + -0.5 640,997 + -0.7 640,997 + -0.2 640,998 - -0.7 640,998 - +0.1 640,998 - +0.0 640,998 - -1.4 640,998 - +0.1 641,012 + -3.5 641,012 + -1.6 641,012 + -0.5 641,013 - -0.5 641,013 - -1.0 641,013 - -1.8 641,032 - -1.2 641,043 + -0.6 641,044 - +0.9 641,064 - -0.8 641,067 + +1.5 641,068 - -0.2 641,107 + +0.5 641,189 + -0.5 641,190 - -1.5 641,190 - +1.4 641,263 + DDA3937_RS02900 0.18 -2.0 641,264 - DDA3937_RS02900 0.18 -2.5 641,264 - DDA3937_RS02900 0.18 -1.0 641,264 - DDA3937_RS02900 0.18 -1.5 641,363 + DDA3937_RS02900 0.31 -1.0 641,363 + DDA3937_RS02900 0.31 +0.1 641,364 - DDA3937_RS02900 0.31 +2.5 641,589 - DDA3937_RS02900 0.59 -0.3 641,671 - DDA3937_RS02900 0.69 -2.5 641,703 + DDA3937_RS02900 0.73 +2.1 641,792 + DDA3937_RS02900 0.84 -1.6 641,840 - +1.0 641,857 + -1.3 641,858 - -0.1 641,858 - +0.1 641,858 - +0.9 641,858 - -0.5 641,871 + +1.1 641,871 + -0.1 641,871 + -0.1 641,872 - +0.2 641,872 - -0.2 641,872 - -1.3 641,872 - +0.1 641,901 - -0.2 641,901 - -0.5 641,901 - -1.3 641,917 + -2.1 641,917 + -0.0 641,917 + -0.2 642,018 + -1.1 642,018 + -0.8 642,018 + -0.9 642,018 + +0.2 642,018 + -0.1 642,037 + -1.2 642,037 + +1.2 642,095 - -0.5 642,114 + +0.0 642,114 + +1.3 642,150 + -0.7 642,191 - +1.3 642,411 - +0.0 642,427 + -1.7 642,428 - -0.5 642,487 + -0.1 642,491 - +0.8 642,558 - -0.4 642,569 - +0.9 642,587 + -0.9 642,587 + -0.1 642,588 - +0.6 642,596 + +0.4 642,620 + -2.9 642,690 + -1.0 642,690 + -2.8 642,723 + -0.6 642,723 + -1.8 642,724 - -0.9 642,724 - -0.8 642,901 - DDA3937_RS02905 0.11 -0.3
Or see this region's nucleotide sequence