Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01310

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01300 and DDA3937_RS01305 are separated by 312 nucleotidesDDA3937_RS01305 and DDA3937_RS01310 are separated by 14 nucleotidesDDA3937_RS01310 and DDA3937_RS01315 are separated by 36 nucleotides DDA3937_RS01300: DDA3937_RS01300 - LysR family transcriptional regulator, at 293,476 to 294,369 _RS01300 DDA3937_RS01305: DDA3937_RS01305 - cupin domain-containing protein, at 294,682 to 295,077 _RS01305 DDA3937_RS01310: DDA3937_RS01310 - hypothetical protein, at 295,092 to 295,301 _RS01310 DDA3937_RS01315: DDA3937_RS01315 - NAD(P)-dependent alcohol dehydrogenase, at 295,338 to 296,384 _RS01315 Position (kb) 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 294.265 kb on + strand, within DDA3937_RS01300at 294.265 kb on + strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.364 kb on - strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.417 kb on - strandat 294.417 kb on - strandat 294.417 kb on - strandat 294.417 kb on - strandat 294.417 kb on - strandat 294.417 kb on - strandat 294.419 kb on - strandat 294.419 kb on - strandat 294.419 kb on - strandat 294.419 kb on - strandat 294.426 kb on - strandat 294.429 kb on + strandat 294.429 kb on + strandat 294.430 kb on - strandat 294.430 kb on - strandat 294.446 kb on + strandat 294.447 kb on - strandat 294.447 kb on - strandat 294.447 kb on - strandat 294.447 kb on - strandat 294.470 kb on + strandat 294.470 kb on + strandat 294.470 kb on + strandat 294.493 kb on + strandat 294.494 kb on - strandat 294.589 kb on + strandat 294.589 kb on + strandat 294.590 kb on - strandat 294.595 kb on + strandat 294.596 kb on - strandat 294.596 kb on - strandat 294.596 kb on - strandat 294.603 kb on + strandat 294.603 kb on + strandat 294.603 kb on + strandat 294.604 kb on - strandat 294.604 kb on - strandat 294.604 kb on - strandat 294.604 kb on - strandat 294.604 kb on - strandat 294.604 kb on - strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.613 kb on - strandat 294.613 kb on - strandat 294.613 kb on - strandat 294.613 kb on - strandat 294.749 kb on + strand, within DDA3937_RS01305at 294.749 kb on + strand, within DDA3937_RS01305at 294.749 kb on + strand, within DDA3937_RS01305at 294.749 kb on + strand, within DDA3937_RS01305at 294.750 kb on - strand, within DDA3937_RS01305at 294.938 kb on + strand, within DDA3937_RS01305at 294.938 kb on + strand, within DDA3937_RS01305at 294.938 kb on + strand, within DDA3937_RS01305at 294.939 kb on - strand, within DDA3937_RS01305at 294.939 kb on - strand, within DDA3937_RS01305at 294.939 kb on - strand, within DDA3937_RS01305at 295.075 kb on + strandat 295.075 kb on + strandat 295.142 kb on + strand, within DDA3937_RS01310at 295.142 kb on + strand, within DDA3937_RS01310at 295.142 kb on + strand, within DDA3937_RS01310at 295.143 kb on - strand, within DDA3937_RS01310at 295.143 kb on - strand, within DDA3937_RS01310at 295.146 kb on - strand, within DDA3937_RS01310at 295.182 kb on + strand, within DDA3937_RS01310at 295.182 kb on + strand, within DDA3937_RS01310at 295.182 kb on + strand, within DDA3937_RS01310at 295.183 kb on - strand, within DDA3937_RS01310at 295.183 kb on - strand, within DDA3937_RS01310at 295.183 kb on - strand, within DDA3937_RS01310at 295.191 kb on + strand, within DDA3937_RS01310at 295.191 kb on + strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.192 kb on - strand, within DDA3937_RS01310at 295.196 kb on + strand, within DDA3937_RS01310at 295.196 kb on + strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.197 kb on - strand, within DDA3937_RS01310at 295.263 kb on - strand, within DDA3937_RS01310at 295.299 kb on + strandat 295.299 kb on + strandat 295.300 kb on - strandat 295.315 kb on - strandat 295.331 kb on + strandat 295.331 kb on + strandat 295.332 kb on - strandat 295.332 kb on - strandat 295.332 kb on - strandat 295.332 kb on - strandat 295.332 kb on - strandat 295.444 kb on - strand, within DDA3937_RS01315at 295.444 kb on - strand, within DDA3937_RS01315at 295.444 kb on - strand, within DDA3937_RS01315at 295.634 kb on + strand, within DDA3937_RS01315at 295.634 kb on + strand, within DDA3937_RS01315at 295.634 kb on + strand, within DDA3937_RS01315at 295.634 kb on + strand, within DDA3937_RS01315at 295.635 kb on - strand, within DDA3937_RS01315at 295.635 kb on - strand, within DDA3937_RS01315at 295.635 kb on - strand, within DDA3937_RS01315at 295.635 kb on - strand, within DDA3937_RS01315at 295.635 kb on - strand, within DDA3937_RS01315at 295.653 kb on + strand, within DDA3937_RS01315at 295.654 kb on - strand, within DDA3937_RS01315at 295.654 kb on - strand, within DDA3937_RS01315at 295.680 kb on + strand, within DDA3937_RS01315at 295.680 kb on + strand, within DDA3937_RS01315at 295.681 kb on - strand, within DDA3937_RS01315at 295.681 kb on - strand, within DDA3937_RS01315at 295.681 kb on - strand, within DDA3937_RS01315at 295.681 kb on - strand, within DDA3937_RS01315at 295.681 kb on - strand, within DDA3937_RS01315at 295.726 kb on - strand, within DDA3937_RS01315at 295.820 kb on + strand, within DDA3937_RS01315at 295.821 kb on - strand, within DDA3937_RS01315at 295.821 kb on - strand, within DDA3937_RS01315at 295.901 kb on + strand, within DDA3937_RS01315at 295.946 kb on - strand, within DDA3937_RS01315at 295.946 kb on - strand, within DDA3937_RS01315at 296.077 kb on - strand, within DDA3937_RS01315at 296.087 kb on + strand, within DDA3937_RS01315at 296.087 kb on + strand, within DDA3937_RS01315at 296.097 kb on + strand, within DDA3937_RS01315at 296.097 kb on + strand, within DDA3937_RS01315at 296.097 kb on + strand, within DDA3937_RS01315at 296.097 kb on + strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315at 296.098 kb on - strand, within DDA3937_RS01315

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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294,265 + DDA3937_RS01300 0.88 -1.0
294,265 + DDA3937_RS01300 0.88 -0.9
294,266 - DDA3937_RS01300 0.88 -0.2
294,266 - DDA3937_RS01300 0.88 -1.4
294,266 - DDA3937_RS01300 0.88 +0.8
294,364 - +0.7
294,416 + -1.0
294,416 + -1.5
294,416 + +1.6
294,416 + +0.7
294,416 + -1.5
294,416 + -1.4
294,416 + +0.4
294,417 - -0.5
294,417 - -0.5
294,417 - -0.7
294,417 - -0.6
294,417 - +0.2
294,417 - +1.6
294,419 - +1.0
294,419 - +0.8
294,419 - -0.1
294,419 - -0.4
294,426 - -1.0
294,429 + -0.8
294,429 + +0.0
294,430 - -1.4
294,430 - -2.2
294,446 + +0.0
294,447 - +0.4
294,447 - -1.3
294,447 - +0.5
294,447 - -1.2
294,470 + -0.2
294,470 + -0.6
294,470 + -1.4
294,493 + -2.1
294,494 - -1.6
294,589 + -0.6
294,589 + -1.2
294,590 - -0.4
294,595 + -0.6
294,596 - -1.0
294,596 - -0.5
294,596 - +0.7
294,603 + -0.7
294,603 + -3.0
294,603 + -1.2
294,604 - -0.3
294,604 - -3.0
294,604 - -1.0
294,604 - -0.3
294,604 - -1.0
294,604 - -1.0
294,612 + -0.2
294,612 + +0.4
294,612 + -2.0
294,613 - -0.0
294,613 - -0.3
294,613 - -1.1
294,613 - -1.5
294,749 + DDA3937_RS01305 0.17 -0.9
294,749 + DDA3937_RS01305 0.17 +1.1
294,749 + DDA3937_RS01305 0.17 +0.2
294,749 + DDA3937_RS01305 0.17 -0.7
294,750 - DDA3937_RS01305 0.17 +0.0
294,938 + DDA3937_RS01305 0.65 -0.9
294,938 + DDA3937_RS01305 0.65 -0.8
294,938 + DDA3937_RS01305 0.65 -1.5
294,939 - DDA3937_RS01305 0.65 +0.4
294,939 - DDA3937_RS01305 0.65 -1.4
294,939 - DDA3937_RS01305 0.65 +0.9
295,075 + -0.5
295,075 + +0.7
295,142 + DDA3937_RS01310 0.24 -0.2
295,142 + DDA3937_RS01310 0.24 -0.7
295,142 + DDA3937_RS01310 0.24 +1.0
295,143 - DDA3937_RS01310 0.24 +0.0
295,143 - DDA3937_RS01310 0.24 +1.6
295,146 - DDA3937_RS01310 0.26 +0.2
295,182 + DDA3937_RS01310 0.43 -0.6
295,182 + DDA3937_RS01310 0.43 -1.8
295,182 + DDA3937_RS01310 0.43 -0.2
295,183 - DDA3937_RS01310 0.43 -1.5
295,183 - DDA3937_RS01310 0.43 -0.2
295,183 - DDA3937_RS01310 0.43 +1.8
295,191 + DDA3937_RS01310 0.47 -2.8
295,191 + DDA3937_RS01310 0.47 +0.9
295,192 - DDA3937_RS01310 0.48 +3.0
295,192 - DDA3937_RS01310 0.48 -1.4
295,192 - DDA3937_RS01310 0.48 +0.7
295,192 - DDA3937_RS01310 0.48 -1.1
295,192 - DDA3937_RS01310 0.48 -0.4
295,192 - DDA3937_RS01310 0.48 -0.4
295,192 - DDA3937_RS01310 0.48 +0.7
295,196 + DDA3937_RS01310 0.50 -1.1
295,196 + DDA3937_RS01310 0.50 -2.8
295,197 - DDA3937_RS01310 0.50 +1.7
295,197 - DDA3937_RS01310 0.50 -0.3
295,197 - DDA3937_RS01310 0.50 -1.5
295,197 - DDA3937_RS01310 0.50 -1.1
295,197 - DDA3937_RS01310 0.50 -1.1
295,197 - DDA3937_RS01310 0.50 +0.2
295,197 - DDA3937_RS01310 0.50 -0.5
295,263 - DDA3937_RS01310 0.81 +0.3
295,299 + +2.0
295,299 + -0.7
295,300 - +0.8
295,315 - +0.6
295,331 + -0.2
295,331 + -1.7
295,332 - +0.5
295,332 - -0.2
295,332 - +0.8
295,332 - +0.7
295,332 - -1.8
295,444 - DDA3937_RS01315 0.10 -1.0
295,444 - DDA3937_RS01315 0.10 +0.2
295,444 - DDA3937_RS01315 0.10 -1.8
295,634 + DDA3937_RS01315 0.28 -0.8
295,634 + DDA3937_RS01315 0.28 -1.2
295,634 + DDA3937_RS01315 0.28 -1.8
295,634 + DDA3937_RS01315 0.28 -1.3
295,635 - DDA3937_RS01315 0.28 +1.1
295,635 - DDA3937_RS01315 0.28 -1.0
295,635 - DDA3937_RS01315 0.28 -1.4
295,635 - DDA3937_RS01315 0.28 -0.6
295,635 - DDA3937_RS01315 0.28 +0.3
295,653 + DDA3937_RS01315 0.30 -1.2
295,654 - DDA3937_RS01315 0.30 -0.8
295,654 - DDA3937_RS01315 0.30 +0.6
295,680 + DDA3937_RS01315 0.33 -1.2
295,680 + DDA3937_RS01315 0.33 +0.0
295,681 - DDA3937_RS01315 0.33 -0.1
295,681 - DDA3937_RS01315 0.33 -1.1
295,681 - DDA3937_RS01315 0.33 +0.8
295,681 - DDA3937_RS01315 0.33 +0.1
295,681 - DDA3937_RS01315 0.33 +0.6
295,726 - DDA3937_RS01315 0.37 +1.4
295,820 + DDA3937_RS01315 0.46 -0.9
295,821 - DDA3937_RS01315 0.46 -0.4
295,821 - DDA3937_RS01315 0.46 -1.6
295,901 + DDA3937_RS01315 0.54 +0.2
295,946 - DDA3937_RS01315 0.58 -0.4
295,946 - DDA3937_RS01315 0.58 -2.5
296,077 - DDA3937_RS01315 0.71 +0.4
296,087 + DDA3937_RS01315 0.72 -1.0
296,087 + DDA3937_RS01315 0.72 -1.4
296,097 + DDA3937_RS01315 0.72 +0.4
296,097 + DDA3937_RS01315 0.72 -1.1
296,097 + DDA3937_RS01315 0.72 +0.4
296,097 + DDA3937_RS01315 0.72 +0.3
296,098 - DDA3937_RS01315 0.73 +0.4
296,098 - DDA3937_RS01315 0.73 +0.4
296,098 - DDA3937_RS01315 0.73 -1.5
296,098 - DDA3937_RS01315 0.73 -0.2
296,098 - DDA3937_RS01315 0.73 -1.4
296,098 - DDA3937_RS01315 0.73 +0.2
296,098 - DDA3937_RS01315 0.73 +1.1

Or see this region's nucleotide sequence