Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01260 and DDA3937_RS01265 are separated by 9 nucleotides DDA3937_RS01265 and DDA3937_RS01270 are separated by 72 nucleotides
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 285.295 kb on + strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.333 kb on + strand, within DDA3937_RS01260 at 285.334 kb on - strand, within DDA3937_RS01260 at 285.384 kb on + strand, within DDA3937_RS01260 at 285.384 kb on + strand at 285.384 kb on + strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.493 kb on + strand, within DDA3937_RS01260 at 285.504 kb on - strand, within DDA3937_RS01260 at 285.631 kb on + strand, within DDA3937_RS01260 at 285.632 kb on - strand, within DDA3937_RS01260 at 285.720 kb on + strand, within DDA3937_RS01260 at 285.721 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.804 kb on - strand, within DDA3937_RS01260 at 285.844 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.937 kb on + strand, within DDA3937_RS01260 at 285.938 kb on - strand, within DDA3937_RS01260 at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.131 kb on - strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.163 kb on + strand at 286.183 kb on + strand at 286.183 kb on + strand at 286.192 kb on - strand at 286.346 kb on - strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.434 kb on + strand, within DDA3937_RS01265 at 286.475 kb on - strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.632 kb on - strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.690 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand at 286.785 kb on + strand, within DDA3937_RS01265 at 286.786 kb on - strand, within DDA3937_RS01265 at 286.813 kb on + strand, within DDA3937_RS01265 at 286.814 kb on - strand, within DDA3937_RS01265 at 286.878 kb on + strand, within DDA3937_RS01265 at 286.900 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.978 kb on + strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 287.005 kb on + strand, within DDA3937_RS01265 at 287.006 kb on - strand at 287.061 kb on + strand, within DDA3937_RS01265 at 287.062 kb on - strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.102 kb on - strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.144 kb on - strand, within DDA3937_RS01265 at 287.188 kb on - strand at 287.188 kb on - strand at 287.230 kb on - strand at 287.230 kb on - strand at 287.255 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.359 kb on - strand at 287.388 kb on + strand at 287.389 kb on - strand at 287.482 kb on - strand, within DDA3937_RS01270 at 287.482 kb on - strand, within DDA3937_RS01270 at 287.489 kb on + strand, within DDA3937_RS01270 at 287.490 kb on - strand, within DDA3937_RS01270 at 287.508 kb on + strand, within DDA3937_RS01270 at 287.509 kb on - strand at 287.744 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.082 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.226 kb on - strand, within DDA3937_RS01270 at 288.247 kb on - strand, within DDA3937_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 285,295 + DDA3937_RS01260 0.26 -1.3 285,296 - DDA3937_RS01260 0.26 +0.5 285,296 - DDA3937_RS01260 0.26 -2.3 285,333 + DDA3937_RS01260 0.29 -2.3 285,334 - DDA3937_RS01260 0.29 -1.9 285,384 + DDA3937_RS01260 0.34 -0.7 285,384 + -0.3 285,384 + DDA3937_RS01260 0.34 -0.4 285,385 - DDA3937_RS01260 0.34 +0.7 285,385 - DDA3937_RS01260 0.34 -1.5 285,493 + DDA3937_RS01260 0.44 -0.3 285,504 - DDA3937_RS01260 0.45 -1.1 285,631 + DDA3937_RS01260 0.56 +0.1 285,632 - DDA3937_RS01260 0.56 +0.1 285,720 + DDA3937_RS01260 0.64 -1.2 285,721 - DDA3937_RS01260 0.65 -0.3 285,745 - DDA3937_RS01260 0.67 -0.4 285,745 - DDA3937_RS01260 0.67 -0.9 285,745 - DDA3937_RS01260 0.67 +0.9 285,745 - DDA3937_RS01260 0.67 +1.0 285,745 - DDA3937_RS01260 0.67 -0.3 285,804 - DDA3937_RS01260 0.72 +1.3 285,844 - DDA3937_RS01260 0.76 +1.3 285,853 - DDA3937_RS01260 0.77 -0.4 285,853 - DDA3937_RS01260 0.77 -0.3 285,853 - DDA3937_RS01260 0.77 +1.7 285,853 - DDA3937_RS01260 0.77 -0.2 285,937 + DDA3937_RS01260 0.84 -0.5 285,938 - DDA3937_RS01260 0.84 -0.6 286,096 + -0.2 286,096 + -0.6 286,096 + -0.8 286,096 + -0.7 286,096 + +0.4 286,096 + +1.1 286,097 - -0.6 286,097 - -1.0 286,097 - -0.5 286,097 - +0.2 286,097 - -0.7 286,097 - +2.4 286,097 - -0.8 286,097 - -0.3 286,131 - -1.9 286,149 + -0.9 286,149 + +1.7 286,149 + -0.7 286,149 + +0.1 286,149 + -2.2 286,149 + +0.1 286,149 + -0.3 286,149 + -1.2 286,149 + -0.3 286,149 + +2.7 286,149 + -1.2 286,149 + -1.3 286,149 + -2.3 286,150 - +0.7 286,150 - +0.2 286,150 - -0.9 286,150 - +0.5 286,150 - -1.5 286,150 - -0.8 286,150 - -0.5 286,150 - -3.3 286,150 - -0.9 286,150 - +0.3 286,150 - -1.5 286,163 + -0.5 286,183 + +1.4 286,183 + -1.5 286,192 - +0.6 286,346 - DDA3937_RS01265 0.19 -0.9 286,378 + DDA3937_RS01265 0.22 -2.2 286,378 + DDA3937_RS01265 0.22 -1.3 286,378 + DDA3937_RS01265 0.22 -0.1 286,434 + DDA3937_RS01265 0.27 -2.1 286,475 - DDA3937_RS01265 0.30 -1.2 286,486 + DDA3937_RS01265 0.31 -0.6 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -0.7 286,486 + DDA3937_RS01265 0.31 -2.1 286,486 + DDA3937_RS01265 0.31 +0.1 286,486 + DDA3937_RS01265 0.31 -1.4 286,486 + DDA3937_RS01265 0.31 -1.7 286,486 + DDA3937_RS01265 0.31 -0.9 286,487 - DDA3937_RS01265 0.31 +0.6 286,487 - DDA3937_RS01265 0.31 +1.9 286,487 - DDA3937_RS01265 0.31 -1.7 286,487 - DDA3937_RS01265 0.31 -0.0 286,487 - +0.1 286,487 - DDA3937_RS01265 0.31 -0.4 286,487 - DDA3937_RS01265 0.31 -0.6 286,487 - DDA3937_RS01265 0.31 -0.5 286,487 - DDA3937_RS01265 0.31 +0.1 286,487 - DDA3937_RS01265 0.31 +0.5 286,487 - DDA3937_RS01265 0.31 -1.0 286,488 + DDA3937_RS01265 0.31 -1.3 286,488 + DDA3937_RS01265 0.31 -0.4 286,488 + DDA3937_RS01265 0.31 -2.5 286,489 - DDA3937_RS01265 0.31 -1.7 286,489 - DDA3937_RS01265 0.31 -2.4 286,489 - DDA3937_RS01265 0.31 -1.2 286,632 - DDA3937_RS01265 0.44 -0.2 286,683 + DDA3937_RS01265 0.48 +0.1 286,683 + DDA3937_RS01265 0.48 -1.0 286,690 + DDA3937_RS01265 0.49 -0.2 286,785 + DDA3937_RS01265 0.57 -0.7 286,785 + DDA3937_RS01265 0.57 -0.2 286,785 + -0.7 286,785 + DDA3937_RS01265 0.57 -1.0 286,786 - DDA3937_RS01265 0.57 +1.7 286,813 + DDA3937_RS01265 0.59 +0.2 286,814 - DDA3937_RS01265 0.59 -0.5 286,878 + DDA3937_RS01265 0.64 -0.2 286,900 + DDA3937_RS01265 0.66 -0.1 286,920 + DDA3937_RS01265 0.68 +0.1 286,920 + DDA3937_RS01265 0.68 -1.5 286,920 + DDA3937_RS01265 0.68 -1.5 286,920 + DDA3937_RS01265 0.68 -1.7 286,920 + DDA3937_RS01265 0.68 -0.2 286,920 + DDA3937_RS01265 0.68 -0.0 286,920 + DDA3937_RS01265 0.68 +0.6 286,921 - DDA3937_RS01265 0.68 -0.7 286,921 - DDA3937_RS01265 0.68 -2.1 286,921 - DDA3937_RS01265 0.68 -1.7 286,921 - -0.2 286,921 - DDA3937_RS01265 0.68 +0.1 286,921 - DDA3937_RS01265 0.68 -2.4 286,921 - DDA3937_RS01265 0.68 -0.3 286,921 - DDA3937_RS01265 0.68 -0.4 286,921 - DDA3937_RS01265 0.68 +0.1 286,978 + DDA3937_RS01265 0.73 -1.1 286,979 - DDA3937_RS01265 0.73 -0.2 286,979 - DDA3937_RS01265 0.73 -1.2 286,979 - DDA3937_RS01265 0.73 -0.1 287,005 + DDA3937_RS01265 0.75 +1.1 287,006 - +0.7 287,061 + DDA3937_RS01265 0.80 -0.5 287,062 - DDA3937_RS01265 0.80 -0.3 287,101 + DDA3937_RS01265 0.83 -0.2 287,101 + DDA3937_RS01265 0.83 -2.8 287,102 - DDA3937_RS01265 0.83 +0.4 287,143 + DDA3937_RS01265 0.87 +0.3 287,143 + DDA3937_RS01265 0.87 -0.7 287,143 + DDA3937_RS01265 0.87 -0.9 287,144 - DDA3937_RS01265 0.87 +0.7 287,188 - -0.1 287,188 - -0.8 287,230 - -2.3 287,230 - -0.2 287,255 - -1.2 287,265 - +0.2 287,265 - -0.4 287,265 - +0.9 287,317 + -0.4 287,317 + -1.7 287,317 + -0.8 287,317 + -1.1 287,359 - +0.9 287,388 + -1.9 287,389 - +3.0 287,482 - DDA3937_RS01270 0.11 +3.1 287,482 - DDA3937_RS01270 0.11 +0.8 287,489 + DDA3937_RS01270 0.12 +1.3 287,490 - DDA3937_RS01270 0.12 -0.0 287,508 + DDA3937_RS01270 0.14 -0.4 287,509 - +2.4 287,744 + DDA3937_RS01270 0.37 +0.2 287,776 + DDA3937_RS01270 0.40 -0.1 287,776 + DDA3937_RS01270 0.40 -0.9 287,787 + DDA3937_RS01270 0.41 +0.2 287,787 + DDA3937_RS01270 0.41 -0.8 287,788 - DDA3937_RS01270 0.41 -2.5 287,788 - DDA3937_RS01270 0.41 -0.5 287,788 - DDA3937_RS01270 0.41 +2.3 287,880 + DDA3937_RS01270 0.50 -0.2 287,880 + DDA3937_RS01270 0.50 -0.4 287,881 - DDA3937_RS01270 0.50 -1.1 287,881 - DDA3937_RS01270 0.50 -2.9 287,881 - DDA3937_RS01270 0.50 -2.9 287,881 - DDA3937_RS01270 0.50 +0.1 287,904 + DDA3937_RS01270 0.52 +0.1 287,904 + DDA3937_RS01270 0.52 +0.2 288,022 - DDA3937_RS01270 0.64 -0.7 288,022 - DDA3937_RS01270 0.64 -1.2 288,022 - DDA3937_RS01270 0.64 -2.1 288,022 - DDA3937_RS01270 0.64 -0.6 288,022 - DDA3937_RS01270 0.64 -1.3 288,024 + DDA3937_RS01270 0.64 -1.0 288,024 + DDA3937_RS01270 0.64 -0.0 288,024 + DDA3937_RS01270 0.64 -1.6 288,025 - DDA3937_RS01270 0.64 +0.3 288,025 - DDA3937_RS01270 0.64 +1.2 288,025 - DDA3937_RS01270 0.64 -0.3 288,082 + DDA3937_RS01270 0.69 +0.8 288,225 + DDA3937_RS01270 0.83 +0.8 288,225 + DDA3937_RS01270 0.83 -0.8 288,226 - DDA3937_RS01270 0.84 -0.7 288,247 - DDA3937_RS01270 0.86 -0.7
Or see this region's nucleotide sequence