Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00595 and DDA3937_RS00600 are separated by 55 nucleotides DDA3937_RS00600 and DDA3937_RS00605 are separated by 185 nucleotides
DDA3937_RS00595: DDA3937_RS00595 - MFS transporter, at 140,798 to 142,021
_RS00595
DDA3937_RS00600: DDA3937_RS00600 - DcrB family lipoprotein, at 142,077 to 142,640
_RS00600
DDA3937_RS00605: DDA3937_RS00605 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 142,826 to 143,497
_RS00605
Position (kb) 142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 141.109 kb on - strand, within DDA3937_RS00595 at 141.109 kb on - strand, within DDA3937_RS00595 at 141.114 kb on - strand, within DDA3937_RS00595 at 141.293 kb on + strand, within DDA3937_RS00595 at 141.294 kb on - strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.336 kb on - strand, within DDA3937_RS00595 at 141.336 kb on - strand, within DDA3937_RS00595 at 141.430 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.482 kb on + strand, within DDA3937_RS00595 at 141.483 kb on - strand, within DDA3937_RS00595 at 141.535 kb on + strand, within DDA3937_RS00595 at 141.535 kb on + strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.549 kb on - strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.912 kb on - strand at 141.914 kb on - strand at 141.933 kb on - strand at 141.986 kb on + strand at 141.986 kb on + strand at 141.986 kb on + strand at 141.987 kb on - strand at 142.287 kb on + strand, within DDA3937_RS00600 at 142.412 kb on - strand, within DDA3937_RS00600 at 142.620 kb on - strand at 142.621 kb on + strand at 142.621 kb on + strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.630 kb on - strand at 142.655 kb on + strand at 142.807 kb on + strand at 142.808 kb on - strand at 142.824 kb on + strand at 142.825 kb on - strand at 142.845 kb on + strand at 142.891 kb on + strand at 142.892 kb on - strand at 142.905 kb on + strand, within DDA3937_RS00605 at 142.905 kb on + strand, within DDA3937_RS00605 at 142.950 kb on + strand, within DDA3937_RS00605 at 142.951 kb on - strand, within DDA3937_RS00605 at 143.007 kb on + strand, within DDA3937_RS00605 at 143.007 kb on + strand, within DDA3937_RS00605 at 143.008 kb on - strand, within DDA3937_RS00605 at 143.008 kb on - strand, within DDA3937_RS00605 at 143.142 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.226 kb on + strand, within DDA3937_RS00605 at 143.247 kb on + strand, within DDA3937_RS00605 at 143.284 kb on + strand, within DDA3937_RS00605 at 143.285 kb on - strand, within DDA3937_RS00605 at 143.356 kb on + strand, within DDA3937_RS00605 at 143.357 kb on - strand, within DDA3937_RS00605 at 143.392 kb on + strand, within DDA3937_RS00605 at 143.412 kb on + strand, within DDA3937_RS00605 at 143.412 kb on + strand, within DDA3937_RS00605 at 143.413 kb on - strand, within DDA3937_RS00605 at 143.413 kb on - strand, within DDA3937_RS00605 at 143.413 kb on - strand, within DDA3937_RS00605 at 143.425 kb on + strand, within DDA3937_RS00605 at 143.426 kb on - strand, within DDA3937_RS00605 at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.497 kb on + strand at 143.498 kb on - strand at 143.498 kb on - strand at 143.498 kb on - strand at 143.498 kb on - strand at 143.498 kb on - strand at 143.553 kb on - strand at 143.554 kb on + strand at 143.554 kb on + strand at 143.554 kb on + strand at 143.554 kb on + strand at 143.554 kb on + strand at 143.554 kb on + strand at 143.555 kb on - strand at 143.555 kb on - strand at 143.555 kb on - strand at 143.555 kb on - strand at 143.563 kb on + strand at 143.564 kb on - strand at 143.564 kb on - strand at 143.564 kb on - strand at 143.564 kb on - strand at 143.592 kb on + strand at 143.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 141,109 - DDA3937_RS00595 0.25 -0.3 141,109 - DDA3937_RS00595 0.25 -3.2 141,114 - DDA3937_RS00595 0.26 +1.4 141,293 + DDA3937_RS00595 0.40 -0.3 141,294 - DDA3937_RS00595 0.41 -1.9 141,335 + DDA3937_RS00595 0.44 -0.5 141,335 + DDA3937_RS00595 0.44 -0.6 141,335 + DDA3937_RS00595 0.44 +0.5 141,336 - DDA3937_RS00595 0.44 -0.9 141,336 - DDA3937_RS00595 0.44 -0.3 141,430 - DDA3937_RS00595 0.52 -0.5 141,463 - DDA3937_RS00595 0.54 -0.4 141,463 - DDA3937_RS00595 0.54 -1.4 141,463 - DDA3937_RS00595 0.54 -1.0 141,463 - DDA3937_RS00595 0.54 -1.4 141,482 + DDA3937_RS00595 0.56 -0.8 141,483 - DDA3937_RS00595 0.56 -0.7 141,535 + DDA3937_RS00595 0.60 -0.2 141,535 + DDA3937_RS00595 0.60 -0.0 141,536 - DDA3937_RS00595 0.60 +0.5 141,536 - DDA3937_RS00595 0.60 -0.8 141,536 - DDA3937_RS00595 0.60 +1.3 141,549 - DDA3937_RS00595 0.61 +0.8 141,848 + DDA3937_RS00595 0.86 -0.1 141,848 + DDA3937_RS00595 0.86 -1.0 141,848 + DDA3937_RS00595 0.86 -0.8 141,849 - DDA3937_RS00595 0.86 -1.2 141,849 - DDA3937_RS00595 0.86 -1.2 141,849 - DDA3937_RS00595 0.86 -1.3 141,849 - DDA3937_RS00595 0.86 +1.9 141,849 - DDA3937_RS00595 0.86 +0.4 141,911 + -0.4 141,911 + -0.2 141,911 + -1.3 141,911 + +1.1 141,911 + -2.8 141,912 - +1.4 141,914 - +0.3 141,933 - -0.1 141,986 + -0.5 141,986 + -0.6 141,986 + -1.3 141,987 - +1.4 142,287 + DDA3937_RS00600 0.37 -0.3 142,412 - DDA3937_RS00600 0.59 +0.7 142,620 - +2.2 142,621 + -0.9 142,621 + -1.8 142,622 - -0.3 142,622 - -0.3 142,630 - +1.9 142,655 + -0.5 142,807 + +0.3 142,808 - -1.9 142,824 + -0.6 142,825 - -0.8 142,845 + -2.2 142,891 + -2.0 142,892 - -0.3 142,905 + DDA3937_RS00605 0.12 -0.6 142,905 + DDA3937_RS00605 0.12 -1.1 142,950 + DDA3937_RS00605 0.18 -1.1 142,951 - DDA3937_RS00605 0.19 -1.6 143,007 + DDA3937_RS00605 0.27 -0.1 143,007 + DDA3937_RS00605 0.27 -1.9 143,008 - DDA3937_RS00605 0.27 -1.8 143,008 - DDA3937_RS00605 0.27 -0.4 143,142 + DDA3937_RS00605 0.47 -0.9 143,226 + +0.1 143,226 + DDA3937_RS00605 0.60 -1.1 143,226 + DDA3937_RS00605 0.60 +0.3 143,226 + DDA3937_RS00605 0.60 -0.9 143,226 + DDA3937_RS00605 0.60 -2.8 143,226 + DDA3937_RS00605 0.60 -0.0 143,226 + DDA3937_RS00605 0.60 -1.0 143,226 + DDA3937_RS00605 0.60 -3.0 143,226 + DDA3937_RS00605 0.60 -0.5 143,226 + DDA3937_RS00605 0.60 +0.7 143,247 + DDA3937_RS00605 0.63 -0.5 143,284 + DDA3937_RS00605 0.68 -0.3 143,285 - DDA3937_RS00605 0.68 -2.2 143,356 + DDA3937_RS00605 0.79 -0.9 143,357 - DDA3937_RS00605 0.79 +0.1 143,392 + DDA3937_RS00605 0.84 -1.3 143,412 + DDA3937_RS00605 0.87 -2.0 143,412 + DDA3937_RS00605 0.87 +0.1 143,413 - DDA3937_RS00605 0.87 -2.3 143,413 - DDA3937_RS00605 0.87 +0.8 143,413 - DDA3937_RS00605 0.87 +0.4 143,425 + DDA3937_RS00605 0.89 -0.1 143,426 - DDA3937_RS00605 0.89 -0.6 143,497 + -0.7 143,497 + -0.3 143,497 + -1.1 143,497 + -0.9 143,497 + +0.3 143,497 + +1.0 143,497 + -0.3 143,497 + +2.0 143,497 + +1.7 143,497 + -0.4 143,498 - +1.4 143,498 - +1.2 143,498 - +0.0 143,498 - +0.7 143,498 - +0.5 143,553 - -0.7 143,554 + +4.7 143,554 + -1.2 143,554 + +0.2 143,554 + -0.8 143,554 + -2.5 143,554 + -1.4 143,555 - -0.3 143,555 - -2.8 143,555 - -0.1 143,555 - -0.8 143,563 + -0.9 143,564 - -0.4 143,564 - +0.6 143,564 - -0.8 143,564 - +0.1 143,592 + +0.9 143,593 - +0.2
Or see this region's nucleotide sequence