Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00535

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00530 and DDA3937_RS00535 overlap by 4 nucleotidesDDA3937_RS00535 and DDA3937_RS00540 are separated by 11 nucleotides DDA3937_RS00530: DDA3937_RS00530 - UDP-forming cellulose synthase catalytic subunit, at 122,078 to 124,168 _RS00530 DDA3937_RS00535: DDA3937_RS00535 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 124,165 to 126,678 _RS00535 DDA3937_RS00540: DDA3937_RS00540 - cellulose biosynthesis protein BcsC, at 126,690 to 130,586 _RS00540 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 123.209 kb on + strand, within DDA3937_RS00530at 123.209 kb on + strand, within DDA3937_RS00530at 123.210 kb on - strand, within DDA3937_RS00530at 123.278 kb on + strand, within DDA3937_RS00530at 123.278 kb on + strand, within DDA3937_RS00530at 123.298 kb on + strand, within DDA3937_RS00530at 123.299 kb on - strand, within DDA3937_RS00530at 123.299 kb on - strand, within DDA3937_RS00530at 123.299 kb on - strand, within DDA3937_RS00530at 123.362 kb on + strand, within DDA3937_RS00530at 123.362 kb on + strand, within DDA3937_RS00530at 123.363 kb on - strand, within DDA3937_RS00530at 123.417 kb on - strand, within DDA3937_RS00530at 123.623 kb on + strand, within DDA3937_RS00530at 123.624 kb on - strand, within DDA3937_RS00530at 123.624 kb on - strand, within DDA3937_RS00530at 123.624 kb on - strand, within DDA3937_RS00530at 123.624 kb on - strand, within DDA3937_RS00530at 123.624 kb on - strand, within DDA3937_RS00530at 123.640 kb on + strand, within DDA3937_RS00530at 123.641 kb on + strand, within DDA3937_RS00530at 123.641 kb on + strand, within DDA3937_RS00530at 123.641 kb on + strand, within DDA3937_RS00530at 123.642 kb on - strand, within DDA3937_RS00530at 123.642 kb on - strand, within DDA3937_RS00530at 123.649 kb on - strand, within DDA3937_RS00530at 123.649 kb on - strand, within DDA3937_RS00530at 123.649 kb on - strand, within DDA3937_RS00530at 123.649 kb on - strand, within DDA3937_RS00530at 123.777 kb on - strand, within DDA3937_RS00530at 123.860 kb on - strand, within DDA3937_RS00530at 123.860 kb on - strand, within DDA3937_RS00530at 123.949 kb on + strand, within DDA3937_RS00530at 123.949 kb on + strand, within DDA3937_RS00530at 123.950 kb on - strand, within DDA3937_RS00530at 124.080 kb on + strandat 124.182 kb on + strandat 124.182 kb on + strandat 124.287 kb on + strandat 124.371 kb on + strandat 124.572 kb on + strand, within DDA3937_RS00535at 124.573 kb on - strand, within DDA3937_RS00535at 124.631 kb on + strand, within DDA3937_RS00535at 124.631 kb on + strand, within DDA3937_RS00535at 124.631 kb on + strand, within DDA3937_RS00535at 124.632 kb on - strand, within DDA3937_RS00535at 124.692 kb on + strand, within DDA3937_RS00535at 124.692 kb on + strand, within DDA3937_RS00535at 124.693 kb on - strand, within DDA3937_RS00535at 124.828 kb on - strand, within DDA3937_RS00535at 124.828 kb on - strand, within DDA3937_RS00535at 124.876 kb on + strand, within DDA3937_RS00535at 124.947 kb on - strand, within DDA3937_RS00535at 125.000 kb on + strandat 125.009 kb on + strand, within DDA3937_RS00535at 125.009 kb on + strand, within DDA3937_RS00535at 125.009 kb on + strand, within DDA3937_RS00535at 125.111 kb on + strand, within DDA3937_RS00535at 125.112 kb on - strand, within DDA3937_RS00535at 125.239 kb on + strand, within DDA3937_RS00535at 125.239 kb on + strand, within DDA3937_RS00535at 125.240 kb on - strand, within DDA3937_RS00535at 125.241 kb on + strand, within DDA3937_RS00535at 125.241 kb on + strand, within DDA3937_RS00535at 125.241 kb on + strand, within DDA3937_RS00535at 125.241 kb on + strand, within DDA3937_RS00535at 125.241 kb on + strand, within DDA3937_RS00535at 125.242 kb on - strand, within DDA3937_RS00535at 125.242 kb on - strand, within DDA3937_RS00535at 125.242 kb on - strand, within DDA3937_RS00535at 125.242 kb on - strand, within DDA3937_RS00535at 125.242 kb on - strand, within DDA3937_RS00535at 125.259 kb on - strand, within DDA3937_RS00535at 125.375 kb on - strand, within DDA3937_RS00535at 125.590 kb on + strand, within DDA3937_RS00535at 125.591 kb on - strand, within DDA3937_RS00535at 125.613 kb on + strand, within DDA3937_RS00535at 125.701 kb on + strand, within DDA3937_RS00535at 125.701 kb on + strand, within DDA3937_RS00535at 125.702 kb on - strand, within DDA3937_RS00535at 125.703 kb on + strand, within DDA3937_RS00535at 125.703 kb on + strand, within DDA3937_RS00535at 125.704 kb on - strand, within DDA3937_RS00535at 125.722 kb on + strand, within DDA3937_RS00535at 125.723 kb on - strand, within DDA3937_RS00535at 125.732 kb on - strand, within DDA3937_RS00535at 125.737 kb on + strand, within DDA3937_RS00535at 125.738 kb on - strand, within DDA3937_RS00535at 125.755 kb on + strand, within DDA3937_RS00535at 125.755 kb on + strand, within DDA3937_RS00535at 125.756 kb on - strand, within DDA3937_RS00535at 125.773 kb on - strand, within DDA3937_RS00535at 125.890 kb on + strand, within DDA3937_RS00535at 125.891 kb on - strand, within DDA3937_RS00535at 125.891 kb on - strand, within DDA3937_RS00535at 125.933 kb on - strand, within DDA3937_RS00535at 126.169 kb on + strand, within DDA3937_RS00535at 126.169 kb on + strand, within DDA3937_RS00535at 126.277 kb on + strand, within DDA3937_RS00535at 126.381 kb on - strandat 126.381 kb on - strand, within DDA3937_RS00535at 126.381 kb on - strand, within DDA3937_RS00535at 126.381 kb on - strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.391 kb on + strand, within DDA3937_RS00535at 126.392 kb on - strand, within DDA3937_RS00535at 126.392 kb on - strand, within DDA3937_RS00535at 126.392 kb on - strand, within DDA3937_RS00535at 126.392 kb on - strand, within DDA3937_RS00535at 126.517 kb on + strandat 126.517 kb on + strandat 126.517 kb on + strandat 126.517 kb on + strandat 126.517 kb on + strandat 126.518 kb on - strandat 126.518 kb on - strandat 126.518 kb on - strandat 126.518 kb on - strandat 126.518 kb on - strandat 126.536 kb on - strandat 126.689 kb on + strandat 126.689 kb on + strandat 126.689 kb on + strandat 126.689 kb on + strandat 126.690 kb on - strandat 126.690 kb on - strandat 126.690 kb on - strandat 126.706 kb on + strandat 126.707 kb on - strandat 126.803 kb on - strandat 126.829 kb on - strandat 126.829 kb on - strandat 126.915 kb on + strandat 126.915 kb on + strandat 126.916 kb on - strandat 126.916 kb on - strandat 126.930 kb on + strandat 126.930 kb on + strandat 126.930 kb on + strandat 126.931 kb on - strandat 126.965 kb on + strandat 126.966 kb on - strandat 127.171 kb on - strand, within DDA3937_RS00540at 127.173 kb on + strand, within DDA3937_RS00540at 127.173 kb on + strand, within DDA3937_RS00540at 127.174 kb on - strand, within DDA3937_RS00540at 127.174 kb on - strand, within DDA3937_RS00540at 127.294 kb on - strand, within DDA3937_RS00540at 127.294 kb on - strand, within DDA3937_RS00540at 127.294 kb on - strand, within DDA3937_RS00540at 127.422 kb on + strand, within DDA3937_RS00540at 127.422 kb on + strand, within DDA3937_RS00540at 127.422 kb on + strand, within DDA3937_RS00540at 127.422 kb on + strand, within DDA3937_RS00540at 127.423 kb on - strand, within DDA3937_RS00540at 127.423 kb on - strand, within DDA3937_RS00540at 127.431 kb on + strand, within DDA3937_RS00540at 127.431 kb on + strand, within DDA3937_RS00540at 127.432 kb on - strand, within DDA3937_RS00540at 127.470 kb on + strand, within DDA3937_RS00540at 127.470 kb on + strand, within DDA3937_RS00540at 127.471 kb on - strand, within DDA3937_RS00540at 127.471 kb on - strand, within DDA3937_RS00540at 127.471 kb on - strand, within DDA3937_RS00540at 127.474 kb on - strand, within DDA3937_RS00540at 127.614 kb on + strand, within DDA3937_RS00540at 127.656 kb on + strand, within DDA3937_RS00540at 127.656 kb on + strand, within DDA3937_RS00540at 127.656 kb on + strand, within DDA3937_RS00540at 127.657 kb on - strand, within DDA3937_RS00540at 127.657 kb on - strand, within DDA3937_RS00540at 127.657 kb on - strand, within DDA3937_RS00540

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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123,209 + DDA3937_RS00530 0.54 -1.5
123,209 + DDA3937_RS00530 0.54 -1.1
123,210 - DDA3937_RS00530 0.54 +0.1
123,278 + DDA3937_RS00530 0.57 -2.1
123,278 + DDA3937_RS00530 0.57 +1.6
123,298 + DDA3937_RS00530 0.58 +0.2
123,299 - DDA3937_RS00530 0.58 -1.9
123,299 - DDA3937_RS00530 0.58 -0.2
123,299 - DDA3937_RS00530 0.58 -0.8
123,362 + DDA3937_RS00530 0.61 -0.3
123,362 + DDA3937_RS00530 0.61 -1.7
123,363 - DDA3937_RS00530 0.61 -0.4
123,417 - DDA3937_RS00530 0.64 -0.0
123,623 + DDA3937_RS00530 0.74 +0.5
123,624 - DDA3937_RS00530 0.74 +0.9
123,624 - DDA3937_RS00530 0.74 -1.1
123,624 - DDA3937_RS00530 0.74 +0.0
123,624 - DDA3937_RS00530 0.74 +0.1
123,624 - DDA3937_RS00530 0.74 +0.5
123,640 + DDA3937_RS00530 0.75 -0.3
123,641 + DDA3937_RS00530 0.75 -2.0
123,641 + DDA3937_RS00530 0.75 -2.3
123,641 + DDA3937_RS00530 0.75 -1.0
123,642 - DDA3937_RS00530 0.75 -2.3
123,642 - DDA3937_RS00530 0.75 -2.5
123,649 - DDA3937_RS00530 0.75 -0.0
123,649 - DDA3937_RS00530 0.75 +0.1
123,649 - DDA3937_RS00530 0.75 +0.0
123,649 - DDA3937_RS00530 0.75 -1.3
123,777 - DDA3937_RS00530 0.81 -0.8
123,860 - DDA3937_RS00530 0.85 -2.5
123,860 - DDA3937_RS00530 0.85 +0.5
123,949 + DDA3937_RS00530 0.89 -3.1
123,949 + DDA3937_RS00530 0.89 -0.7
123,950 - DDA3937_RS00530 0.90 -1.3
124,080 + -0.5
124,182 + +0.8
124,182 + +0.4
124,287 + +1.2
124,371 + +0.1
124,572 + DDA3937_RS00535 0.16 -0.9
124,573 - DDA3937_RS00535 0.16 -0.6
124,631 + DDA3937_RS00535 0.19 -2.0
124,631 + DDA3937_RS00535 0.19 +0.1
124,631 + DDA3937_RS00535 0.19 -1.0
124,632 - DDA3937_RS00535 0.19 -0.4
124,692 + DDA3937_RS00535 0.21 +1.4
124,692 + DDA3937_RS00535 0.21 -1.9
124,693 - DDA3937_RS00535 0.21 -0.1
124,828 - DDA3937_RS00535 0.26 -0.8
124,828 - DDA3937_RS00535 0.26 -1.6
124,876 + DDA3937_RS00535 0.28 +4.9
124,947 - DDA3937_RS00535 0.31 -0.7
125,000 + +2.1
125,009 + DDA3937_RS00535 0.34 +0.1
125,009 + DDA3937_RS00535 0.34 +0.2
125,009 + DDA3937_RS00535 0.34 -0.4
125,111 + DDA3937_RS00535 0.38 -0.9
125,112 - DDA3937_RS00535 0.38 -2.0
125,239 + DDA3937_RS00535 0.43 -1.1
125,239 + DDA3937_RS00535 0.43 +0.2
125,240 - DDA3937_RS00535 0.43 -0.7
125,241 + DDA3937_RS00535 0.43 +0.1
125,241 + DDA3937_RS00535 0.43 -0.5
125,241 + DDA3937_RS00535 0.43 -1.6
125,241 + DDA3937_RS00535 0.43 -0.7
125,241 + DDA3937_RS00535 0.43 +0.9
125,242 - DDA3937_RS00535 0.43 +3.3
125,242 - DDA3937_RS00535 0.43 -1.4
125,242 - DDA3937_RS00535 0.43 -0.4
125,242 - DDA3937_RS00535 0.43 -1.6
125,242 - DDA3937_RS00535 0.43 +0.8
125,259 - DDA3937_RS00535 0.44 -0.7
125,375 - DDA3937_RS00535 0.48 -1.4
125,590 + DDA3937_RS00535 0.57 -3.2
125,591 - DDA3937_RS00535 0.57 +0.7
125,613 + DDA3937_RS00535 0.58 -0.3
125,701 + DDA3937_RS00535 0.61 -0.3
125,701 + DDA3937_RS00535 0.61 -0.3
125,702 - DDA3937_RS00535 0.61 -0.4
125,703 + DDA3937_RS00535 0.61 -0.4
125,703 + DDA3937_RS00535 0.61 +0.7
125,704 - DDA3937_RS00535 0.61 -1.8
125,722 + DDA3937_RS00535 0.62 -1.1
125,723 - DDA3937_RS00535 0.62 +0.4
125,732 - DDA3937_RS00535 0.62 +1.7
125,737 + DDA3937_RS00535 0.63 -0.8
125,738 - DDA3937_RS00535 0.63 -0.6
125,755 + DDA3937_RS00535 0.63 +0.7
125,755 + DDA3937_RS00535 0.63 -2.3
125,756 - DDA3937_RS00535 0.63 +0.1
125,773 - DDA3937_RS00535 0.64 -1.5
125,890 + DDA3937_RS00535 0.69 -0.2
125,891 - DDA3937_RS00535 0.69 -1.0
125,891 - DDA3937_RS00535 0.69 -1.1
125,933 - DDA3937_RS00535 0.70 -0.3
126,169 + DDA3937_RS00535 0.80 -0.9
126,169 + DDA3937_RS00535 0.80 -1.0
126,277 + DDA3937_RS00535 0.84 -1.5
126,381 - -0.6
126,381 - DDA3937_RS00535 0.88 -0.9
126,381 - DDA3937_RS00535 0.88 +1.1
126,381 - DDA3937_RS00535 0.88 -1.9
126,391 + DDA3937_RS00535 0.89 -1.7
126,391 + DDA3937_RS00535 0.89 -2.7
126,391 + DDA3937_RS00535 0.89 +0.3
126,391 + DDA3937_RS00535 0.89 +1.2
126,391 + DDA3937_RS00535 0.89 -1.1
126,391 + DDA3937_RS00535 0.89 +1.7
126,391 + DDA3937_RS00535 0.89 +0.3
126,392 - DDA3937_RS00535 0.89 +0.7
126,392 - DDA3937_RS00535 0.89 -2.4
126,392 - DDA3937_RS00535 0.89 +0.1
126,392 - DDA3937_RS00535 0.89 -1.0
126,517 + -1.9
126,517 + -1.3
126,517 + -2.7
126,517 + -0.8
126,517 + -2.7
126,518 - +0.0
126,518 - -0.5
126,518 - -2.0
126,518 - -0.3
126,518 - -0.2
126,536 - -0.9
126,689 + +0.3
126,689 + -0.5
126,689 + -1.4
126,689 + -0.2
126,690 - -0.8
126,690 - -1.1
126,690 - -1.5
126,706 + -0.7
126,707 - -1.9
126,803 - -1.4
126,829 - -2.3
126,829 - -0.3
126,915 + -1.8
126,915 + -0.9
126,916 - -1.0
126,916 - +0.7
126,930 + -0.3
126,930 + -1.8
126,930 + -0.6
126,931 - -0.9
126,965 + -1.6
126,966 - -0.4
127,171 - DDA3937_RS00540 0.12 -0.3
127,173 + DDA3937_RS00540 0.12 -0.7
127,173 + DDA3937_RS00540 0.12 -2.2
127,174 - DDA3937_RS00540 0.12 -2.0
127,174 - DDA3937_RS00540 0.12 -0.3
127,294 - DDA3937_RS00540 0.15 -1.4
127,294 - DDA3937_RS00540 0.15 -0.2
127,294 - DDA3937_RS00540 0.15 -1.3
127,422 + DDA3937_RS00540 0.19 +0.4
127,422 + DDA3937_RS00540 0.19 -1.5
127,422 + DDA3937_RS00540 0.19 -0.4
127,422 + DDA3937_RS00540 0.19 -2.5
127,423 - DDA3937_RS00540 0.19 -1.3
127,423 - DDA3937_RS00540 0.19 -0.8
127,431 + DDA3937_RS00540 0.19 -0.7
127,431 + DDA3937_RS00540 0.19 -1.3
127,432 - DDA3937_RS00540 0.19 -0.2
127,470 + DDA3937_RS00540 0.20 -0.3
127,470 + DDA3937_RS00540 0.20 +1.5
127,471 - DDA3937_RS00540 0.20 +0.1
127,471 - DDA3937_RS00540 0.20 -0.0
127,471 - DDA3937_RS00540 0.20 +1.1
127,474 - DDA3937_RS00540 0.20 -0.8
127,614 + DDA3937_RS00540 0.24 +0.8
127,656 + DDA3937_RS00540 0.25 -2.6
127,656 + DDA3937_RS00540 0.25 -1.3
127,656 + DDA3937_RS00540 0.25 -0.1
127,657 - DDA3937_RS00540 0.25 -0.6
127,657 - DDA3937_RS00540 0.25 -0.2
127,657 - DDA3937_RS00540 0.25 -1.5

Or see this region's nucleotide sequence