Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00165 and DDA3937_RS00170 are separated by 181 nucleotides DDA3937_RS00170 and DDA3937_RS00175 overlap by 1 nucleotides DDA3937_RS00175 and DDA3937_RS00180 are separated by 6 nucleotides
DDA3937_RS00165: DDA3937_RS00165 - uracil-xanthine permease, at 38,891 to 40,279
_RS00165
DDA3937_RS00170: DDA3937_RS00170 - ATP-dependent DNA helicase RecG, at 40,461 to 42,542
_RS00170
DDA3937_RS00175: DDA3937_RS00175 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 42,542 to 43,234
_RS00175
DDA3937_RS00180: DDA3937_RS00180 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 43,241 to 45,343
_RS00180
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.499 kb on - strand, within DDA3937_RS00165 at 39.502 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.785 kb on - strand, within DDA3937_RS00165 at 39.909 kb on - strand, within DDA3937_RS00165 at 40.212 kb on + strand at 40.282 kb on + strand at 40.318 kb on - strand at 40.378 kb on - strand at 40.399 kb on - strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.411 kb on - strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.750 kb on + strand, within DDA3937_RS00170 at 40.750 kb on + strand, within DDA3937_RS00170 at 40.751 kb on - strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 41.083 kb on + strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.169 kb on - strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170 at 41.427 kb on + strand, within DDA3937_RS00170 at 41.427 kb on + strand, within DDA3937_RS00170 at 41.428 kb on - strand, within DDA3937_RS00170 at 41.649 kb on + strand at 41.649 kb on + strand, within DDA3937_RS00170 at 41.649 kb on + strand, within DDA3937_RS00170 at 41.649 kb on + strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.693 kb on + strand, within DDA3937_RS00170 at 41.693 kb on + strand, within DDA3937_RS00170 at 42.050 kb on + strand, within DDA3937_RS00170 at 42.050 kb on + strand, within DDA3937_RS00170 at 42.051 kb on - strand, within DDA3937_RS00170 at 42.051 kb on - strand, within DDA3937_RS00170 at 42.088 kb on + strand at 42.088 kb on + strand, within DDA3937_RS00170 at 42.186 kb on + strand, within DDA3937_RS00170 at 42.186 kb on + strand, within DDA3937_RS00170 at 42.187 kb on - strand, within DDA3937_RS00170 at 42.196 kb on + strand, within DDA3937_RS00170 at 42.196 kb on + strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.251 kb on + strand, within DDA3937_RS00170 at 42.261 kb on + strand at 42.262 kb on - strand, within DDA3937_RS00170 at 42.273 kb on - strand, within DDA3937_RS00170 at 42.351 kb on + strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.362 kb on - strand at 42.362 kb on - strand at 42.362 kb on - strand at 42.391 kb on + strand at 42.392 kb on - strand at 42.543 kb on + strand at 42.544 kb on - strand at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.724 kb on - strand, within DDA3937_RS00175 at 42.895 kb on + strand, within DDA3937_RS00175 at 42.896 kb on - strand, within DDA3937_RS00175 at 42.896 kb on - strand, within DDA3937_RS00175 at 42.906 kb on + strand, within DDA3937_RS00175 at 42.907 kb on - strand, within DDA3937_RS00175 at 42.907 kb on - strand, within DDA3937_RS00175 at 43.136 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.151 kb on - strand, within DDA3937_RS00175 at 43.151 kb on - strand, within DDA3937_RS00175 at 43.196 kb on - strand at 43.210 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.218 kb on + strand at 43.219 kb on - strand at 43.234 kb on + strand at 43.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 39,498 + DDA3937_RS00165 0.44 -1.1 39,498 + DDA3937_RS00165 0.44 -0.8 39,499 - DDA3937_RS00165 0.44 -0.1 39,502 - DDA3937_RS00165 0.44 -0.2 39,618 - DDA3937_RS00165 0.52 -0.9 39,618 - DDA3937_RS00165 0.52 -1.5 39,785 - DDA3937_RS00165 0.64 -0.4 39,909 - DDA3937_RS00165 0.73 -1.9 40,212 + +2.4 40,282 + -0.1 40,318 - -0.6 40,378 - -0.1 40,399 - -1.5 40,402 + -0.9 40,402 + +1.7 40,402 + +0.7 40,402 + +0.4 40,402 + +0.1 40,402 + +2.4 40,403 - -0.5 40,403 - +0.1 40,403 - -0.3 40,403 - -1.5 40,403 - -0.6 40,403 - -1.0 40,403 - -0.5 40,411 - -0.0 40,472 + +0.4 40,472 + -3.1 40,472 + -1.6 40,472 + -0.8 40,472 + -2.3 40,472 + -0.0 40,473 - -0.2 40,473 - +0.5 40,473 - -0.4 40,473 - -0.9 40,473 - +0.5 40,482 - +0.1 40,482 - -0.8 40,482 - -1.8 40,750 + DDA3937_RS00170 0.14 -2.3 40,750 + DDA3937_RS00170 0.14 -0.9 40,751 - DDA3937_RS00170 0.14 -0.6 40,892 + DDA3937_RS00170 0.21 +0.1 40,892 + DDA3937_RS00170 0.21 -1.3 40,892 + DDA3937_RS00170 0.21 -1.6 41,083 + DDA3937_RS00170 0.30 -1.5 41,084 - DDA3937_RS00170 0.30 -1.5 41,084 - DDA3937_RS00170 0.30 -1.3 41,169 - DDA3937_RS00170 0.34 -1.0 41,224 + DDA3937_RS00170 0.37 +0.7 41,224 + DDA3937_RS00170 0.37 -0.9 41,225 - DDA3937_RS00170 0.37 -2.4 41,225 - DDA3937_RS00170 0.37 -1.1 41,427 + DDA3937_RS00170 0.46 +0.8 41,427 + DDA3937_RS00170 0.46 -2.7 41,428 - DDA3937_RS00170 0.46 +0.1 41,649 + +0.1 41,649 + DDA3937_RS00170 0.57 -1.1 41,649 + DDA3937_RS00170 0.57 -1.3 41,649 + DDA3937_RS00170 0.57 -2.2 41,650 - DDA3937_RS00170 0.57 -1.3 41,650 - DDA3937_RS00170 0.57 -0.0 41,650 - DDA3937_RS00170 0.57 -0.3 41,650 - DDA3937_RS00170 0.57 -1.3 41,650 - DDA3937_RS00170 0.57 -0.9 41,650 - DDA3937_RS00170 0.57 -2.0 41,693 + DDA3937_RS00170 0.59 +0.4 41,693 + DDA3937_RS00170 0.59 -1.9 42,050 + DDA3937_RS00170 0.76 -1.9 42,050 + DDA3937_RS00170 0.76 +0.1 42,051 - DDA3937_RS00170 0.76 -0.2 42,051 - DDA3937_RS00170 0.76 -0.5 42,088 + +1.7 42,088 + DDA3937_RS00170 0.78 -1.0 42,186 + DDA3937_RS00170 0.83 -0.1 42,186 + DDA3937_RS00170 0.83 +0.7 42,187 - DDA3937_RS00170 0.83 -0.0 42,196 + DDA3937_RS00170 0.83 -0.6 42,196 + DDA3937_RS00170 0.83 -0.6 42,197 - DDA3937_RS00170 0.83 -0.6 42,197 - DDA3937_RS00170 0.83 -0.0 42,197 - DDA3937_RS00170 0.83 -2.7 42,251 + DDA3937_RS00170 0.86 -0.6 42,261 + +2.4 42,262 - DDA3937_RS00170 0.87 -3.0 42,273 - DDA3937_RS00170 0.87 -2.0 42,351 + +2.6 42,352 - -1.4 42,352 - +0.6 42,352 - -0.3 42,352 - -0.3 42,361 + -1.1 42,361 + -1.1 42,361 + -1.3 42,361 + -1.8 42,362 - -1.3 42,362 - +0.3 42,362 - -1.1 42,391 + +3.0 42,392 - -1.6 42,543 + -1.1 42,544 - -1.0 42,723 + DDA3937_RS00175 0.26 -1.8 42,723 + DDA3937_RS00175 0.26 -0.8 42,723 + DDA3937_RS00175 0.26 -0.3 42,723 + DDA3937_RS00175 0.26 -0.1 42,724 - DDA3937_RS00175 0.26 -2.4 42,895 + DDA3937_RS00175 0.51 -2.0 42,896 - DDA3937_RS00175 0.51 -1.1 42,896 - DDA3937_RS00175 0.51 +2.3 42,906 + DDA3937_RS00175 0.53 -1.4 42,907 - DDA3937_RS00175 0.53 -0.0 42,907 - DDA3937_RS00175 0.53 -0.2 43,136 + DDA3937_RS00175 0.86 -1.1 43,150 + DDA3937_RS00175 0.88 -1.4 43,150 + DDA3937_RS00175 0.88 -1.0 43,150 + DDA3937_RS00175 0.88 -1.4 43,150 + DDA3937_RS00175 0.88 -1.8 43,150 + DDA3937_RS00175 0.88 -0.6 43,151 - DDA3937_RS00175 0.88 +2.7 43,151 - DDA3937_RS00175 0.88 -1.8 43,196 - +2.7 43,210 + -0.6 43,216 + +0.1 43,216 + -0.1 43,216 + +0.8 43,216 + -2.0 43,216 + -1.1 43,217 - -0.4 43,217 - -0.8 43,217 - -0.6 43,217 - -0.5 43,217 - -2.0 43,217 - +2.1 43,218 + -1.9 43,219 - -1.1 43,234 + -0.9 43,235 - -0.1
Or see this region's nucleotide sequence