Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20690 and DDA3937_RS20695 are separated by 48 nucleotides DDA3937_RS20695 and DDA3937_RS20700 are separated by 31 nucleotides DDA3937_RS20700 and DDA3937_RS22540 are separated by 130 nucleotides
DDA3937_RS20690: DDA3937_RS20690 - hypothetical protein, at 4,703,631 to 4,704,560
_RS20690
DDA3937_RS20695: DDA3937_RS20695 - hypothetical protein, at 4,704,609 to 4,705,334
_RS20695
DDA3937_RS20700: DDA3937_RS20700 - hypothetical protein, at 4,705,366 to 4,705,854
_RS20700
DDA3937_RS22540: DDA3937_RS22540 - type VI secretion system PAAR protein, at 4,705,985 to 4,706,401
_RS22540
Position (kb) 4704
4705
4706 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4703.653 kb on + strand at 4703.654 kb on - strand at 4703.838 kb on - strand, within DDA3937_RS20690 at 4703.866 kb on - strand, within DDA3937_RS20690 at 4703.874 kb on + strand, within DDA3937_RS20690 at 4703.923 kb on - strand, within DDA3937_RS20690 at 4704.004 kb on - strand, within DDA3937_RS20690 at 4704.005 kb on + strand, within DDA3937_RS20690 at 4704.314 kb on - strand, within DDA3937_RS20690 at 4704.531 kb on - strand at 4704.534 kb on - strand at 4704.590 kb on + strand at 4704.591 kb on - strand at 4704.646 kb on + strand at 4704.972 kb on - strand, within DDA3937_RS20695 at 4705.035 kb on - strand, within DDA3937_RS20695 at 4705.247 kb on - strand, within DDA3937_RS20695 at 4705.543 kb on + strand, within DDA3937_RS20700 at 4705.586 kb on + strand, within DDA3937_RS20700 at 4705.869 kb on + strand at 4705.869 kb on + strand at 4705.870 kb on - strand at 4705.870 kb on - strand at 4705.873 kb on + strand at 4705.873 kb on + strand at 4705.873 kb on + strand at 4705.874 kb on - strand at 4705.874 kb on - strand at 4705.898 kb on + strand at 4705.902 kb on - strand at 4705.904 kb on + strand at 4705.905 kb on - strand at 4705.938 kb on - strand at 4705.976 kb on + strand at 4705.976 kb on + strand at 4705.977 kb on - strand at 4705.977 kb on - strand at 4705.979 kb on + strand at 4706.092 kb on + strand, within DDA3937_RS22540 at 4706.093 kb on - strand at 4706.093 kb on - strand, within DDA3937_RS22540 at 4706.095 kb on - strand, within DDA3937_RS22540 at 4706.095 kb on - strand, within DDA3937_RS22540 at 4706.165 kb on + strand, within DDA3937_RS22540 at 4706.166 kb on - strand, within DDA3937_RS22540 at 4706.200 kb on + strand, within DDA3937_RS22540 at 4706.200 kb on + strand, within DDA3937_RS22540 at 4706.201 kb on - strand, within DDA3937_RS22540 at 4706.217 kb on - strand, within DDA3937_RS22540 at 4706.273 kb on + strand, within DDA3937_RS22540 at 4706.315 kb on + strand, within DDA3937_RS22540 at 4706.315 kb on + strand, within DDA3937_RS22540 at 4706.316 kb on - strand, within DDA3937_RS22540 at 4706.316 kb on - strand, within DDA3937_RS22540 at 4706.316 kb on - strand, within DDA3937_RS22540 at 4706.316 kb on - strand, within DDA3937_RS22540 at 4706.316 kb on - strand, within DDA3937_RS22540
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,703,653 + +0.4 4,703,654 - -0.5 4,703,838 - DDA3937_RS20690 0.22 -0.3 4,703,866 - DDA3937_RS20690 0.25 -1.6 4,703,874 + DDA3937_RS20690 0.26 +1.4 4,703,923 - DDA3937_RS20690 0.31 +0.5 4,704,004 - DDA3937_RS20690 0.40 -0.5 4,704,005 + DDA3937_RS20690 0.40 +1.9 4,704,314 - DDA3937_RS20690 0.73 +0.6 4,704,531 - +1.1 4,704,534 - -0.5 4,704,590 + -0.4 4,704,591 - +0.7 4,704,646 + +1.4 4,704,972 - DDA3937_RS20695 0.50 -1.2 4,705,035 - DDA3937_RS20695 0.59 -1.4 4,705,247 - DDA3937_RS20695 0.88 -0.4 4,705,543 + DDA3937_RS20700 0.36 +0.6 4,705,586 + DDA3937_RS20700 0.45 +0.7 4,705,869 + -0.0 4,705,869 + -0.3 4,705,870 - -0.8 4,705,870 - +0.4 4,705,873 + -0.4 4,705,873 + -0.3 4,705,873 + +0.2 4,705,874 - -1.1 4,705,874 - +3.6 4,705,898 + -0.0 4,705,902 - -2.4 4,705,904 + +0.4 4,705,905 - -0.1 4,705,938 - +0.4 4,705,976 + -0.1 4,705,976 + -2.2 4,705,977 - +0.4 4,705,977 - -1.9 4,705,979 + +1.6 4,706,092 + DDA3937_RS22540 0.26 -1.2 4,706,093 - -0.2 4,706,093 - DDA3937_RS22540 0.26 +0.8 4,706,095 - DDA3937_RS22540 0.26 -1.4 4,706,095 - DDA3937_RS22540 0.26 -0.8 4,706,165 + DDA3937_RS22540 0.43 +0.2 4,706,166 - DDA3937_RS22540 0.43 +0.5 4,706,200 + DDA3937_RS22540 0.52 -1.2 4,706,200 + DDA3937_RS22540 0.52 -0.9 4,706,201 - DDA3937_RS22540 0.52 +0.2 4,706,217 - DDA3937_RS22540 0.56 -0.0 4,706,273 + DDA3937_RS22540 0.69 -0.4 4,706,315 + DDA3937_RS22540 0.79 +0.2 4,706,315 + DDA3937_RS22540 0.79 +1.1 4,706,316 - DDA3937_RS22540 0.79 +0.5 4,706,316 - DDA3937_RS22540 0.79 -0.3 4,706,316 - DDA3937_RS22540 0.79 -0.6 4,706,316 - DDA3937_RS22540 0.79 -0.9 4,706,316 - DDA3937_RS22540 0.79 -1.2
Or see this region's nucleotide sequence