Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20170

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,595,309	-		DDA3937_RS20160	0.29	-0.5
4,595,309	-		DDA3937_RS20160	0.29	-0.4
4,595,309	-		DDA3937_RS20160	0.29	+1.3
4,595,360	+		DDA3937_RS20160	0.35	-1.2
4,595,397	+		DDA3937_RS20160	0.39	-2.5
4,595,398	-		DDA3937_RS20160	0.39	-0.7
4,595,398	-		DDA3937_RS20160	0.39	+0.3
4,595,398	-		DDA3937_RS20160	0.39	+0.7
4,595,475	+		DDA3937_RS20160	0.47	-2.2
4,595,475	+		DDA3937_RS20160	0.47	-1.5
4,595,475	+		DDA3937_RS20160	0.47	-2.3
4,595,475	+		DDA3937_RS20160	0.47	-2.7
4,595,475	+		DDA3937_RS20160	0.47	-3.0
4,595,475	+		DDA3937_RS20160	0.47	-1.8
4,595,475	+		DDA3937_RS20160	0.47	-1.1
4,595,476	-		DDA3937_RS20160	0.47	-1.0
4,595,476	-		DDA3937_RS20160	0.47	+1.0
4,595,476	-		DDA3937_RS20160	0.47	+0.1
4,595,476	-		DDA3937_RS20160	0.47	-0.4
4,595,476	-		DDA3937_RS20160	0.47	-1.0
4,595,480	-		DDA3937_RS20160	0.48	-0.3
4,595,491	+		DDA3937_RS20160	0.49	-0.2
4,595,510	-		DDA3937_RS20160	0.51	-1.1
4,595,510	-		DDA3937_RS20160	0.51	+0.4
4,595,580	+		DDA3937_RS20160	0.58	-2.1
4,595,580	+		DDA3937_RS20160	0.58	-0.6
4,595,580	+		DDA3937_RS20160	0.58	-1.9
4,595,581	-		DDA3937_RS20160	0.58	-0.3
4,595,621	-		DDA3937_RS20160	0.63	+0.8
4,595,622	+		DDA3937_RS20160	0.63	-0.2
4,595,623	-		DDA3937_RS20160	0.63	-0.8
4,595,651	+		DDA3937_RS20160	0.66	-1.2
4,595,651	+		DDA3937_RS20160	0.66	-4.0
4,595,651	+		DDA3937_RS20160	0.66	+0.4
4,595,651	+		DDA3937_RS20160	0.66	-0.4
4,595,651	+		DDA3937_RS20160	0.66	-2.0
4,595,651	+		DDA3937_RS20160	0.66	-1.9
4,595,651	+		DDA3937_RS20160	0.66	-0.2
4,595,652	-		DDA3937_RS20160	0.66	-0.2
4,595,652	-		DDA3937_RS20160	0.66	+0.0
4,595,652	-		DDA3937_RS20160	0.66	-0.7
4,595,652	-		DDA3937_RS20160	0.66	-0.3
4,595,652	-		DDA3937_RS20160	0.66	-1.4
4,595,652	-		DDA3937_RS20160	0.66	+0.6
4,595,652	-		DDA3937_RS20160	0.66	+0.7
4,595,652	-		DDA3937_RS20160	0.66	-1.4
4,595,652	-		DDA3937_RS20160	0.66	-1.3
4,595,652	-		DDA3937_RS20160	0.66	+1.2
4,595,666	+		DDA3937_RS20160	0.68	-1.7
4,595,666	+		DDA3937_RS20160	0.68	+0.1
4,595,666	+		DDA3937_RS20160	0.68	-2.0
4,595,680	+		DDA3937_RS20160	0.69	-2.5
4,595,680	+		DDA3937_RS20160	0.69	-1.2
4,595,682	+		DDA3937_RS20160	0.69	-2.0
4,595,682	+		DDA3937_RS20160	0.69	-0.3
4,595,683	-		DDA3937_RS20160	0.69	-0.6
4,595,683	-		DDA3937_RS20160	0.69	+0.6
4,595,749	-		DDA3937_RS20160	0.77	+0.6
4,595,761	+		DDA3937_RS20160	0.78	-1.4
4,595,761	+		DDA3937_RS20160	0.78	-3.5
4,595,761	+		DDA3937_RS20160	0.78	-0.2
4,595,761	+		DDA3937_RS20160	0.78	-0.4
4,595,761	+		DDA3937_RS20160	0.78	-2.2
4,595,762	-		DDA3937_RS20160	0.78	-0.9
4,595,762	-		DDA3937_RS20160	0.78	-0.4
4,595,839	+		DDA3937_RS20160	0.86	-1.1
4,595,840	-		DDA3937_RS20160	0.86	-1.1
4,595,840	-		DDA3937_RS20160	0.86	-0.8
4,595,840	-		DDA3937_RS20160	0.86	-0.8
4,595,840	-		DDA3937_RS20160	0.86	-0.2
4,595,840	-		DDA3937_RS20160	0.86	+0.0
4,595,840	-		DDA3937_RS20160	0.86	-0.1
4,595,841	+		DDA3937_RS20160	0.87	-3.3
4,595,842	-		DDA3937_RS20160	0.87	+0.9
4,595,842	-		DDA3937_RS20160	0.87	+1.6
4,595,842	-		DDA3937_RS20160	0.87	+0.9
4,595,944	+				-1.7
4,595,944	+				-1.5
4,595,945	-				+0.5
4,595,945	-				-0.1
4,595,945	-				-1.6
4,595,945	-				-0.1
4,595,945	-				+0.6
4,595,946	+				-1.4
4,595,946	+				+0.6
4,595,946	+				+2.0
4,595,946	+				+1.6
4,595,946	+				+0.4
4,595,946	+				-1.3
4,595,946	+				-1.2
4,595,947	-				+0.6
4,595,947	-				-0.8
4,595,947	-				+1.0
4,595,947	-				+0.6
4,595,947	-				-0.2
4,595,947	-				+0.9
4,595,947	-				-0.1
4,595,947	-				-1.8
4,595,947	-				-0.0
4,595,947	-				+0.4
4,595,947	-				-1.9
4,595,999	+				-0.1
4,595,999	+				-0.4
4,596,000	-				-0.4
4,596,000	-				-0.6
4,596,000	-				-0.2
4,596,000	-				-1.2
4,596,000	-				-0.5
4,596,057	-		DDA3937_RS20165	0.26	-0.9
4,596,057	-		DDA3937_RS20165	0.26	+1.1
4,596,071	+		DDA3937_RS20165	0.31	-1.0
4,596,071	+		DDA3937_RS20165	0.31	-0.4
4,596,071	+		DDA3937_RS20165	0.31	+0.7
4,596,072	-		DDA3937_RS20165	0.32	-1.2
4,596,072	-		DDA3937_RS20165	0.32	-0.6
4,596,113	+		DDA3937_RS20165	0.48	-0.6
4,596,114	-		DDA3937_RS20165	0.48	-0.2
4,596,114	-		DDA3937_RS20165	0.48	+0.4
4,596,114	-		DDA3937_RS20165	0.48	-1.2
4,596,127	+		DDA3937_RS20165	0.53	+0.3
4,596,127	+		DDA3937_RS20165	0.53	-0.6
4,596,128	-		DDA3937_RS20165	0.53	+0.5
4,596,128	-		DDA3937_RS20165	0.53	-0.2
4,596,142	+		DDA3937_RS20165	0.59	-0.4
4,596,142	+		DDA3937_RS20165	0.59	-0.3
4,596,143	-		DDA3937_RS20165	0.59	+2.4
4,596,200	+		DDA3937_RS20165	0.81	-0.4
4,596,201	-		DDA3937_RS20165	0.82	+0.7
4,596,494	+		DDA3937_RS20170	0.14	+0.4
4,596,494	+		DDA3937_RS20170	0.14	-0.6
4,596,646	+		DDA3937_RS20170	0.23	-1.0
4,596,647	-		DDA3937_RS20170	0.23	+0.0
4,596,647	-		DDA3937_RS20170	0.23	-0.1
4,596,756	+		DDA3937_RS20170	0.30	-0.6
4,596,756	+		DDA3937_RS20170	0.30	+0.1
4,596,756	+		DDA3937_RS20170	0.30	-1.3
4,596,756	+		DDA3937_RS20170	0.30	-1.1
4,596,756	+		DDA3937_RS20170	0.30	+0.1
4,596,756	+		DDA3937_RS20170	0.30	-0.8
4,596,756	+		DDA3937_RS20170	0.30	-1.6
4,596,757	-		DDA3937_RS20170	0.30	-0.6
4,596,757	-		DDA3937_RS20170	0.30	+0.1
4,596,757	-		DDA3937_RS20170	0.30	+1.4
4,596,757	-		DDA3937_RS20170	0.30	-0.1
4,596,757	-		DDA3937_RS20170	0.30	-0.2
4,596,757	-		DDA3937_RS20170	0.30	+0.3
4,596,757	-		DDA3937_RS20170	0.30	+0.0
4,596,757	-		DDA3937_RS20170	0.30	-0.0
4,596,757	-		DDA3937_RS20170	0.30	-0.2
4,596,757	-		DDA3937_RS20170	0.30	+1.3
4,596,819	+		DDA3937_RS20170	0.34	-1.7
4,596,820	-		DDA3937_RS20170	0.34	+1.4
4,596,820	-		DDA3937_RS20170	0.34	-0.8
4,596,820	-		DDA3937_RS20170	0.34	-0.4
4,596,820	-		DDA3937_RS20170	0.34	-0.2
4,596,854	+		DDA3937_RS20170	0.36	-1.4
4,596,854	+		DDA3937_RS20170	0.36	-1.4
4,596,854	+		DDA3937_RS20170	0.36	-1.3
4,596,855	-		DDA3937_RS20170	0.36	-1.6
4,596,855	-		DDA3937_RS20170	0.36	-0.4
4,596,855	-		DDA3937_RS20170	0.36	+0.6
4,596,879	-		DDA3937_RS20170	0.37	-1.2
4,597,008	+		DDA3937_RS20170	0.45	+0.2
4,597,008	+		DDA3937_RS20170	0.45	-0.2
4,597,008	+		DDA3937_RS20170	0.45	-0.1
4,597,165	-		DDA3937_RS20170	0.55	+2.4
4,597,181	+		DDA3937_RS20170	0.56	-0.4
4,597,181	+		DDA3937_RS20170	0.56	-1.2
4,597,181	+		DDA3937_RS20170	0.56	+0.5
4,597,182	-		DDA3937_RS20170	0.56	-2.3
4,597,182	-		DDA3937_RS20170	0.56	+0.1
4,597,184	+		DDA3937_RS20170	0.56	-0.3
4,597,184	+		DDA3937_RS20170	0.56	-0.6
4,597,185	-		DDA3937_RS20170	0.56	+0.2
4,597,185	-		DDA3937_RS20170	0.56	+1.2
4,597,307	+		DDA3937_RS20170	0.63	-0.5
4,597,307	+		DDA3937_RS20170	0.63	-1.0
4,597,307	+		DDA3937_RS20170	0.63	-0.6
4,597,307	+		DDA3937_RS20170	0.63	+0.3
4,597,307	+				+0.8
4,597,307	+		DDA3937_RS20170	0.63	+1.1
4,597,307	+		DDA3937_RS20170	0.63	-1.1
4,597,307	+		DDA3937_RS20170	0.63	-0.5
4,597,308	-		DDA3937_RS20170	0.63	-0.1
4,597,308	-		DDA3937_RS20170	0.63	-1.8
4,597,308	-		DDA3937_RS20170	0.63	-1.2
4,597,308	-		DDA3937_RS20170	0.63	-2.1
4,597,308	-		DDA3937_RS20170	0.63	-0.6
4,597,443	+		DDA3937_RS20170	0.72	-1.0
4,597,444	-		DDA3937_RS20170	0.72	+1.4
4,597,732	-		DDA3937_RS20170	0.89	+2.0
4,597,809	-				-0.2
4,597,821	-				+0.0
4,597,821	-				-0.7
4,597,830	+				-0.3
4,597,830	+				-0.6
4,597,831	-				-0.6
4,597,888	+				-0.5
4,597,888	+				+0.9
4,597,889	-				+0.3
4,597,889	-				+0.7
4,597,911	+				-0.5
4,597,911	+				+0.8
4,597,912	-				-0.8
4,597,912	-				-0.4
4,597,912	-				-0.2
4,597,915	+				+0.7
4,597,916	-				-2.1
4,597,929	+				+0.9
4,597,930	-				-2.0
4,597,930	-				-1.4
4,598,093	-		DDA3937_RS22530	0.42	+0.9
4,598,095	+		DDA3937_RS22530	0.44	+0.1
4,598,096	-		DDA3937_RS22530	0.45	-0.4
4,598,096	-		DDA3937_RS22530	0.45	+0.1
4,598,096	-		DDA3937_RS22530	0.45	-0.4
4,598,120	+		DDA3937_RS22530	0.70	-0.8
4,598,165	-				+1.7
4,598,169	+				+0.9
4,598,170	-				-0.9
4,598,183	+				-0.4
4,598,204	-				-0.4
4,598,278	+				-0.0
4,598,403	+				-0.3
4,598,403	+				-0.2
4,598,403	+				-1.3
4,598,403	+				-0.5
4,598,403	+				+0.4
4,598,403	+				-0.3
4,598,403	+				+0.9
4,598,403	+				-1.4
4,598,403	+				-0.1
4,598,403	+				-0.8
4,598,403	+				-0.4
4,598,404	-				+2.0
4,598,404	-				-1.7
4,598,404	-				-0.2
4,598,407	+				-0.0
4,598,407	+				-0.1
4,598,407	+				-0.5
4,598,407	+				-0.6
4,598,407	+				+0.8
4,598,408	-				-0.1
4,598,408	-				-0.0
4,598,408	-				+0.7
4,598,408	-				-0.3
4,598,561	+		DDA3937_RS20175	0.22	+0.8
4,598,562	-		DDA3937_RS20175	0.23	+0.7
4,598,562	-		DDA3937_RS20175	0.23	+0.3
4,598,731	+		DDA3937_RS20175	0.36	+0.2
4,598,732	-		DDA3937_RS20175	0.37	+0.3
4,598,732	-		DDA3937_RS20175	0.37	+0.2
4,598,732	-		DDA3937_RS20175	0.37	-0.5
4,598,734	+		DDA3937_RS20175	0.37	-0.3
4,598,735	-		DDA3937_RS20175	0.37	-0.8
4,598,736	+		DDA3937_RS20175	0.37	-1.6
4,598,736	+		DDA3937_RS20175	0.37	-0.3
4,598,736	+		DDA3937_RS20175	0.37	-0.5
4,598,736	+		DDA3937_RS20175	0.37	+0.5
4,598,736	+		DDA3937_RS20175	0.37	-0.3
4,598,736	+		DDA3937_RS20175	0.37	-1.1
4,598,737	-		DDA3937_RS20175	0.37	-2.2
4,598,737	-		DDA3937_RS20175	0.37	+1.6
4,598,737	-		DDA3937_RS20175	0.37	-0.2
4,598,737	-		DDA3937_RS20175	0.37	+0.5
4,598,737	-		DDA3937_RS20175	0.37	-0.8
4,598,740	+		DDA3937_RS20175	0.37	+1.1
4,598,740	+		DDA3937_RS20175	0.37	-0.5
4,598,740	+		DDA3937_RS20175	0.37	+0.7
4,598,741	-		DDA3937_RS20175	0.37	-0.2
4,598,741	-		DDA3937_RS20175	0.37	+0.0
4,598,741	-		DDA3937_RS20175	0.37	-0.8
4,598,741	-		DDA3937_RS20175	0.37	-0.5
4,598,741	-		DDA3937_RS20175	0.37	+0.1
4,598,750	+		DDA3937_RS20175	0.38	-0.4
4,598,750	+		DDA3937_RS20175	0.38	-1.6
4,598,750	+		DDA3937_RS20175	0.38	-0.7
4,598,751	-		DDA3937_RS20175	0.38	+0.2
4,598,751	-		DDA3937_RS20175	0.38	-0.4
4,598,752	+		DDA3937_RS20175	0.38	+1.0
4,598,753	-		DDA3937_RS20175	0.38	+0.6
4,598,849	+		DDA3937_RS20175	0.46	+0.9
4,598,850	-		DDA3937_RS20175	0.46	-0.8
4,598,859	+		DDA3937_RS20175	0.47	-0.3