Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20095 and DDA3937_RS20100 are separated by 364 nucleotides DDA3937_RS20100 and DDA3937_RS20105 are separated by 51 nucleotides
DDA3937_RS20095: DDA3937_RS20095 - glycoside hydrolase family 28 protein, at 4,574,420 to 4,576,240
_RS20095
DDA3937_RS20100: DDA3937_RS20100 - glycoside hydrolase family 28 protein, at 4,576,605 to 4,578,413
_RS20100
DDA3937_RS20105: DDA3937_RS20105 - DNA helicase Rep, at 4,578,465 to 4,580,489
_RS20105
Position (kb) 4576
4577
4578
4579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4575.692 kb on + strand, within DDA3937_RS20095 at 4575.692 kb on + strand, within DDA3937_RS20095 at 4575.692 kb on + strand, within DDA3937_RS20095 at 4575.693 kb on - strand, within DDA3937_RS20095 at 4575.693 kb on - strand, within DDA3937_RS20095 at 4575.693 kb on - strand, within DDA3937_RS20095 at 4575.693 kb on - strand, within DDA3937_RS20095 at 4575.721 kb on - strand, within DDA3937_RS20095 at 4575.756 kb on + strand, within DDA3937_RS20095 at 4575.756 kb on + strand, within DDA3937_RS20095 at 4575.757 kb on - strand, within DDA3937_RS20095 at 4575.757 kb on - strand, within DDA3937_RS20095 at 4575.774 kb on + strand, within DDA3937_RS20095 at 4575.775 kb on - strand, within DDA3937_RS20095 at 4575.775 kb on - strand, within DDA3937_RS20095 at 4575.846 kb on + strand, within DDA3937_RS20095 at 4575.846 kb on + strand, within DDA3937_RS20095 at 4575.846 kb on + strand, within DDA3937_RS20095 at 4575.846 kb on + strand, within DDA3937_RS20095 at 4575.853 kb on + strand, within DDA3937_RS20095 at 4575.857 kb on - strand, within DDA3937_RS20095 at 4575.901 kb on - strand, within DDA3937_RS20095 at 4575.901 kb on - strand at 4576.049 kb on - strand, within DDA3937_RS20095 at 4576.049 kb on - strand, within DDA3937_RS20095 at 4576.049 kb on - strand, within DDA3937_RS20095 at 4576.058 kb on - strand, within DDA3937_RS20095 at 4576.246 kb on - strand at 4576.251 kb on + strand at 4576.252 kb on - strand at 4576.252 kb on - strand at 4576.252 kb on - strand at 4576.252 kb on - strand at 4576.252 kb on - strand at 4576.258 kb on + strand at 4576.275 kb on - strand at 4576.275 kb on - strand at 4576.280 kb on + strand at 4576.296 kb on + strand at 4576.297 kb on - strand at 4576.297 kb on - strand at 4576.370 kb on - strand at 4576.386 kb on - strand at 4576.391 kb on - strand at 4576.393 kb on - strand at 4576.393 kb on - strand at 4576.393 kb on - strand at 4576.393 kb on - strand at 4576.407 kb on - strand at 4576.407 kb on - strand at 4576.407 kb on - strand at 4576.482 kb on - strand at 4576.482 kb on - strand at 4576.513 kb on + strand at 4576.514 kb on - strand at 4576.574 kb on + strand at 4576.582 kb on + strand at 4576.593 kb on + strand at 4576.594 kb on - strand at 4576.651 kb on + strand at 4576.651 kb on + strand at 4576.651 kb on + strand at 4576.652 kb on - strand at 4576.652 kb on - strand at 4576.663 kb on + strand at 4576.663 kb on + strand at 4576.663 kb on + strand at 4576.663 kb on + strand at 4576.664 kb on - strand at 4576.664 kb on - strand at 4576.664 kb on - strand at 4576.664 kb on - strand at 4576.664 kb on - strand at 4576.667 kb on + strand at 4576.667 kb on + strand at 4576.667 kb on + strand at 4576.668 kb on - strand at 4576.668 kb on - strand at 4576.668 kb on - strand at 4576.670 kb on + strand at 4576.671 kb on - strand at 4576.671 kb on - strand at 4576.726 kb on + strand at 4576.726 kb on + strand at 4576.726 kb on + strand at 4576.727 kb on - strand at 4576.727 kb on - strand at 4576.727 kb on - strand at 4576.727 kb on - strand at 4576.727 kb on - strand at 4576.727 kb on - strand at 4576.731 kb on + strand at 4576.731 kb on + strand at 4576.731 kb on + strand at 4576.732 kb on - strand at 4576.732 kb on - strand at 4576.732 kb on - strand at 4576.732 kb on - strand at 4576.742 kb on + strand at 4576.743 kb on - strand at 4576.743 kb on - strand at 4576.743 kb on - strand at 4576.743 kb on - strand at 4576.804 kb on - strand, within DDA3937_RS20100 at 4576.847 kb on + strand, within DDA3937_RS20100 at 4576.847 kb on + strand, within DDA3937_RS20100 at 4576.863 kb on - strand, within DDA3937_RS20100 at 4576.863 kb on - strand, within DDA3937_RS20100 at 4576.869 kb on + strand, within DDA3937_RS20100 at 4576.869 kb on + strand, within DDA3937_RS20100 at 4576.869 kb on + strand, within DDA3937_RS20100 at 4576.869 kb on + strand, within DDA3937_RS20100 at 4576.869 kb on + strand, within DDA3937_RS20100 at 4576.870 kb on - strand, within DDA3937_RS20100 at 4576.870 kb on - strand, within DDA3937_RS20100 at 4576.870 kb on - strand, within DDA3937_RS20100 at 4576.870 kb on - strand, within DDA3937_RS20100 at 4576.870 kb on - strand, within DDA3937_RS20100 at 4576.874 kb on + strand, within DDA3937_RS20100 at 4576.874 kb on + strand, within DDA3937_RS20100 at 4576.874 kb on + strand, within DDA3937_RS20100 at 4576.874 kb on + strand, within DDA3937_RS20100 at 4576.874 kb on + strand, within DDA3937_RS20100 at 4576.875 kb on - strand, within DDA3937_RS20100 at 4576.875 kb on - strand, within DDA3937_RS20100 at 4576.924 kb on + strand, within DDA3937_RS20100 at 4576.924 kb on + strand, within DDA3937_RS20100 at 4576.978 kb on + strand, within DDA3937_RS20100 at 4576.989 kb on + strand, within DDA3937_RS20100 at 4576.989 kb on + strand, within DDA3937_RS20100 at 4576.990 kb on - strand, within DDA3937_RS20100 at 4577.293 kb on - strand, within DDA3937_RS20100 at 4577.293 kb on - strand, within DDA3937_RS20100 at 4577.293 kb on - strand, within DDA3937_RS20100 at 4577.293 kb on - strand, within DDA3937_RS20100 at 4577.417 kb on + strand, within DDA3937_RS20100 at 4577.447 kb on + strand, within DDA3937_RS20100 at 4577.447 kb on + strand, within DDA3937_RS20100 at 4577.461 kb on - strand, within DDA3937_RS20100 at 4577.461 kb on - strand, within DDA3937_RS20100 at 4577.461 kb on - strand, within DDA3937_RS20100 at 4577.461 kb on - strand, within DDA3937_RS20100 at 4577.475 kb on - strand, within DDA3937_RS20100 at 4577.561 kb on + strand, within DDA3937_RS20100 at 4577.561 kb on + strand, within DDA3937_RS20100 at 4577.561 kb on + strand, within DDA3937_RS20100 at 4577.562 kb on - strand, within DDA3937_RS20100 at 4577.610 kb on + strand, within DDA3937_RS20100 at 4577.610 kb on + strand, within DDA3937_RS20100 at 4577.611 kb on - strand, within DDA3937_RS20100 at 4577.654 kb on + strand, within DDA3937_RS20100 at 4577.654 kb on + strand, within DDA3937_RS20100 at 4577.654 kb on + strand, within DDA3937_RS20100 at 4577.655 kb on - strand, within DDA3937_RS20100 at 4577.655 kb on - strand, within DDA3937_RS20100 at 4577.744 kb on + strand, within DDA3937_RS20100 at 4577.744 kb on + strand, within DDA3937_RS20100 at 4577.745 kb on - strand, within DDA3937_RS20100 at 4577.756 kb on + strand, within DDA3937_RS20100 at 4577.756 kb on + strand, within DDA3937_RS20100 at 4577.757 kb on - strand, within DDA3937_RS20100 at 4577.757 kb on - strand, within DDA3937_RS20100 at 4577.757 kb on - strand, within DDA3937_RS20100 at 4577.762 kb on - strand, within DDA3937_RS20100 at 4577.762 kb on - strand, within DDA3937_RS20100 at 4577.860 kb on + strand, within DDA3937_RS20100 at 4577.871 kb on + strand, within DDA3937_RS20100 at 4577.871 kb on + strand, within DDA3937_RS20100 at 4577.871 kb on + strand, within DDA3937_RS20100 at 4577.871 kb on + strand, within DDA3937_RS20100 at 4577.871 kb on + strand, within DDA3937_RS20100 at 4577.872 kb on - strand, within DDA3937_RS20100 at 4577.872 kb on - strand, within DDA3937_RS20100 at 4577.872 kb on - strand, within DDA3937_RS20100 at 4577.872 kb on - strand, within DDA3937_RS20100 at 4577.872 kb on - strand, within DDA3937_RS20100 at 4577.900 kb on - strand, within DDA3937_RS20100 at 4577.936 kb on - strand, within DDA3937_RS20100 at 4577.936 kb on - strand, within DDA3937_RS20100 at 4578.025 kb on + strand, within DDA3937_RS20100 at 4578.026 kb on - strand, within DDA3937_RS20100 at 4578.026 kb on - strand, within DDA3937_RS20100 at 4578.079 kb on + strand, within DDA3937_RS20100 at 4578.202 kb on - strand, within DDA3937_RS20100 at 4578.389 kb on - strand at 4578.506 kb on + strand at 4578.864 kb on - strand, within DDA3937_RS20105
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,575,692 + DDA3937_RS20095 0.70 -0.3 4,575,692 + DDA3937_RS20095 0.70 -0.8 4,575,692 + DDA3937_RS20095 0.70 -1.1 4,575,693 - DDA3937_RS20095 0.70 -1.2 4,575,693 - DDA3937_RS20095 0.70 -0.5 4,575,693 - DDA3937_RS20095 0.70 -0.3 4,575,693 - DDA3937_RS20095 0.70 -0.8 4,575,721 - DDA3937_RS20095 0.71 -1.2 4,575,756 + DDA3937_RS20095 0.73 -0.3 4,575,756 + DDA3937_RS20095 0.73 +0.1 4,575,757 - DDA3937_RS20095 0.73 -1.0 4,575,757 - DDA3937_RS20095 0.73 +0.0 4,575,774 + DDA3937_RS20095 0.74 -0.2 4,575,775 - DDA3937_RS20095 0.74 -0.2 4,575,775 - DDA3937_RS20095 0.74 -0.8 4,575,846 + DDA3937_RS20095 0.78 +1.0 4,575,846 + DDA3937_RS20095 0.78 +1.1 4,575,846 + DDA3937_RS20095 0.78 -0.8 4,575,846 + DDA3937_RS20095 0.78 -0.5 4,575,853 + DDA3937_RS20095 0.79 +0.2 4,575,857 - DDA3937_RS20095 0.79 -1.5 4,575,901 - DDA3937_RS20095 0.81 -0.3 4,575,901 - +0.4 4,576,049 - DDA3937_RS20095 0.89 -0.3 4,576,049 - DDA3937_RS20095 0.89 -1.4 4,576,049 - DDA3937_RS20095 0.89 -0.2 4,576,058 - DDA3937_RS20095 0.90 -0.9 4,576,246 - +0.4 4,576,251 + -1.3 4,576,252 - +0.4 4,576,252 - -0.6 4,576,252 - -0.1 4,576,252 - +0.4 4,576,252 - -0.2 4,576,258 + -1.2 4,576,275 - -0.6 4,576,275 - -1.7 4,576,280 + +1.4 4,576,296 + -1.5 4,576,297 - -1.1 4,576,297 - -0.1 4,576,370 - +0.4 4,576,386 - -0.1 4,576,391 - -0.3 4,576,393 - -1.2 4,576,393 - -2.9 4,576,393 - -0.1 4,576,393 - +0.4 4,576,407 - -0.4 4,576,407 - +0.7 4,576,407 - -1.7 4,576,482 - +1.6 4,576,482 - +0.5 4,576,513 + -1.3 4,576,514 - +0.6 4,576,574 + -0.9 4,576,582 + +0.5 4,576,593 + -0.2 4,576,594 - -0.2 4,576,651 + +0.4 4,576,651 + -0.1 4,576,651 + -0.1 4,576,652 - -2.6 4,576,652 - -0.1 4,576,663 + -0.4 4,576,663 + +0.5 4,576,663 + +0.2 4,576,663 + -0.6 4,576,664 - -0.5 4,576,664 - +0.4 4,576,664 - -1.5 4,576,664 - +0.1 4,576,664 - -1.1 4,576,667 + -1.7 4,576,667 + -0.7 4,576,667 + +0.9 4,576,668 - +0.1 4,576,668 - +1.8 4,576,668 - -0.9 4,576,670 + +2.2 4,576,671 - -2.3 4,576,671 - -1.2 4,576,726 + -1.5 4,576,726 + -0.6 4,576,726 + +1.8 4,576,727 - +0.9 4,576,727 - +0.6 4,576,727 - -0.2 4,576,727 - -0.1 4,576,727 - -2.1 4,576,727 - -0.5 4,576,731 + -0.4 4,576,731 + -1.0 4,576,731 + -0.2 4,576,732 - -1.0 4,576,732 - +0.5 4,576,732 - +0.5 4,576,732 - -0.8 4,576,742 + -0.6 4,576,743 - +0.4 4,576,743 - -1.0 4,576,743 - +0.2 4,576,743 - -0.2 4,576,804 - DDA3937_RS20100 0.11 -0.8 4,576,847 + DDA3937_RS20100 0.13 -0.1 4,576,847 + DDA3937_RS20100 0.13 -0.4 4,576,863 - DDA3937_RS20100 0.14 +1.4 4,576,863 - DDA3937_RS20100 0.14 -0.1 4,576,869 + DDA3937_RS20100 0.15 +0.8 4,576,869 + DDA3937_RS20100 0.15 -0.5 4,576,869 + DDA3937_RS20100 0.15 -1.6 4,576,869 + DDA3937_RS20100 0.15 +0.1 4,576,869 + DDA3937_RS20100 0.15 +0.3 4,576,870 - DDA3937_RS20100 0.15 -0.2 4,576,870 - DDA3937_RS20100 0.15 +1.8 4,576,870 - DDA3937_RS20100 0.15 -1.5 4,576,870 - DDA3937_RS20100 0.15 +0.4 4,576,870 - DDA3937_RS20100 0.15 +0.1 4,576,874 + DDA3937_RS20100 0.15 -0.2 4,576,874 + DDA3937_RS20100 0.15 +0.4 4,576,874 + DDA3937_RS20100 0.15 -0.3 4,576,874 + DDA3937_RS20100 0.15 +0.5 4,576,874 + DDA3937_RS20100 0.15 +0.5 4,576,875 - DDA3937_RS20100 0.15 -0.2 4,576,875 - DDA3937_RS20100 0.15 +0.4 4,576,924 + DDA3937_RS20100 0.18 -0.1 4,576,924 + DDA3937_RS20100 0.18 +0.4 4,576,978 + DDA3937_RS20100 0.21 -0.6 4,576,989 + DDA3937_RS20100 0.21 -0.3 4,576,989 + DDA3937_RS20100 0.21 -0.1 4,576,990 - DDA3937_RS20100 0.21 +0.6 4,577,293 - DDA3937_RS20100 0.38 -2.1 4,577,293 - DDA3937_RS20100 0.38 +0.4 4,577,293 - DDA3937_RS20100 0.38 -1.1 4,577,293 - DDA3937_RS20100 0.38 -0.1 4,577,417 + DDA3937_RS20100 0.45 -0.1 4,577,447 + DDA3937_RS20100 0.47 -0.1 4,577,447 + DDA3937_RS20100 0.47 +0.9 4,577,461 - DDA3937_RS20100 0.47 -1.5 4,577,461 - DDA3937_RS20100 0.47 -0.0 4,577,461 - DDA3937_RS20100 0.47 +0.6 4,577,461 - DDA3937_RS20100 0.47 +1.0 4,577,475 - DDA3937_RS20100 0.48 +1.1 4,577,561 + DDA3937_RS20100 0.53 -0.6 4,577,561 + DDA3937_RS20100 0.53 -0.6 4,577,561 + DDA3937_RS20100 0.53 -0.2 4,577,562 - DDA3937_RS20100 0.53 -0.1 4,577,610 + DDA3937_RS20100 0.56 +0.4 4,577,610 + DDA3937_RS20100 0.56 +0.6 4,577,611 - DDA3937_RS20100 0.56 +0.5 4,577,654 + DDA3937_RS20100 0.58 -0.1 4,577,654 + DDA3937_RS20100 0.58 -0.5 4,577,654 + DDA3937_RS20100 0.58 -0.6 4,577,655 - DDA3937_RS20100 0.58 +0.5 4,577,655 - DDA3937_RS20100 0.58 +0.0 4,577,744 + DDA3937_RS20100 0.63 -0.8 4,577,744 + DDA3937_RS20100 0.63 -1.1 4,577,745 - DDA3937_RS20100 0.63 -0.2 4,577,756 + DDA3937_RS20100 0.64 -2.0 4,577,756 + DDA3937_RS20100 0.64 +0.7 4,577,757 - DDA3937_RS20100 0.64 -1.1 4,577,757 - DDA3937_RS20100 0.64 +0.7 4,577,757 - DDA3937_RS20100 0.64 +0.6 4,577,762 - DDA3937_RS20100 0.64 +0.5 4,577,762 - DDA3937_RS20100 0.64 -0.3 4,577,860 + DDA3937_RS20100 0.69 +0.0 4,577,871 + DDA3937_RS20100 0.70 -1.9 4,577,871 + DDA3937_RS20100 0.70 -2.0 4,577,871 + DDA3937_RS20100 0.70 -0.6 4,577,871 + DDA3937_RS20100 0.70 -0.0 4,577,871 + DDA3937_RS20100 0.70 +0.1 4,577,872 - DDA3937_RS20100 0.70 +0.1 4,577,872 - DDA3937_RS20100 0.70 -0.3 4,577,872 - DDA3937_RS20100 0.70 -0.9 4,577,872 - DDA3937_RS20100 0.70 -0.8 4,577,872 - DDA3937_RS20100 0.70 +0.7 4,577,900 - DDA3937_RS20100 0.72 -0.2 4,577,936 - DDA3937_RS20100 0.74 -0.2 4,577,936 - DDA3937_RS20100 0.74 -0.2 4,578,025 + DDA3937_RS20100 0.78 +0.9 4,578,026 - DDA3937_RS20100 0.79 +0.1 4,578,026 - DDA3937_RS20100 0.79 -1.3 4,578,079 + DDA3937_RS20100 0.81 +0.7 4,578,202 - DDA3937_RS20100 0.88 +0.8 4,578,389 - -0.7 4,578,506 + -0.2 4,578,864 - DDA3937_RS20105 0.20 +0.8
Or see this region's nucleotide sequence