Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14795

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14790 and DDA3937_RS14795 are separated by 1 nucleotidesDDA3937_RS14795 and DDA3937_RS14800 overlap by 4 nucleotides DDA3937_RS14790: DDA3937_RS14790 - type II secretion system inner membrane protein GspF, at 3,393,439 to 3,394,665 _RS14790 DDA3937_RS14795: DDA3937_RS14795 - type II secretion system ATPase GspE, at 3,394,667 to 3,396,163 _RS14795 DDA3937_RS14800: DDA3937_RS14800 - type II secretion system secretin GspD, at 3,396,160 to 3,398,292 _RS14800 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3393.752 kb on + strand, within DDA3937_RS14790at 3393.752 kb on + strand, within DDA3937_RS14790at 3393.753 kb on - strandat 3393.817 kb on - strand, within DDA3937_RS14790at 3393.853 kb on - strand, within DDA3937_RS14790at 3393.868 kb on - strand, within DDA3937_RS14790at 3393.868 kb on - strand, within DDA3937_RS14790at 3393.970 kb on + strand, within DDA3937_RS14790at 3393.970 kb on + strand, within DDA3937_RS14790at 3394.053 kb on + strand, within DDA3937_RS14790at 3394.053 kb on + strand, within DDA3937_RS14790at 3394.053 kb on + strand, within DDA3937_RS14790at 3394.053 kb on + strand, within DDA3937_RS14790at 3394.053 kb on + strand, within DDA3937_RS14790at 3394.054 kb on - strand, within DDA3937_RS14790at 3394.054 kb on - strand, within DDA3937_RS14790at 3394.059 kb on + strand, within DDA3937_RS14790at 3394.059 kb on + strand, within DDA3937_RS14790at 3394.059 kb on + strand, within DDA3937_RS14790at 3394.059 kb on + strand, within DDA3937_RS14790at 3394.060 kb on - strand, within DDA3937_RS14790at 3394.101 kb on + strand, within DDA3937_RS14790at 3394.102 kb on - strand, within DDA3937_RS14790at 3394.142 kb on + strand, within DDA3937_RS14790at 3394.142 kb on + strand, within DDA3937_RS14790at 3394.193 kb on + strand, within DDA3937_RS14790at 3394.263 kb on - strand, within DDA3937_RS14790at 3394.278 kb on + strand, within DDA3937_RS14790at 3394.470 kb on + strand, within DDA3937_RS14790at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.838 kb on + strand, within DDA3937_RS14795at 3394.839 kb on - strand, within DDA3937_RS14795at 3394.839 kb on - strand, within DDA3937_RS14795at 3394.839 kb on - strand, within DDA3937_RS14795at 3394.839 kb on - strand, within DDA3937_RS14795at 3394.839 kb on - strand, within DDA3937_RS14795at 3394.875 kb on + strand, within DDA3937_RS14795at 3394.875 kb on + strand, within DDA3937_RS14795at 3394.875 kb on + strand, within DDA3937_RS14795at 3394.876 kb on - strand, within DDA3937_RS14795at 3394.876 kb on - strand, within DDA3937_RS14795at 3394.905 kb on + strand, within DDA3937_RS14795at 3394.906 kb on - strand, within DDA3937_RS14795at 3394.913 kb on - strand, within DDA3937_RS14795at 3394.913 kb on - strand, within DDA3937_RS14795at 3394.913 kb on - strand, within DDA3937_RS14795at 3394.962 kb on + strand, within DDA3937_RS14795at 3394.962 kb on + strand, within DDA3937_RS14795at 3394.962 kb on + strand, within DDA3937_RS14795at 3394.962 kb on + strandat 3394.962 kb on + strand, within DDA3937_RS14795at 3394.962 kb on + strand, within DDA3937_RS14795at 3394.963 kb on - strand, within DDA3937_RS14795at 3394.963 kb on - strand, within DDA3937_RS14795at 3394.963 kb on - strand, within DDA3937_RS14795at 3394.963 kb on - strand, within DDA3937_RS14795at 3394.963 kb on - strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.990 kb on + strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.991 kb on - strand, within DDA3937_RS14795at 3394.995 kb on - strand, within DDA3937_RS14795at 3395.012 kb on + strand, within DDA3937_RS14795at 3395.012 kb on + strand, within DDA3937_RS14795at 3395.012 kb on + strand, within DDA3937_RS14795at 3395.095 kb on + strand, within DDA3937_RS14795at 3395.177 kb on + strand, within DDA3937_RS14795at 3395.245 kb on + strand, within DDA3937_RS14795at 3395.246 kb on - strand, within DDA3937_RS14795at 3395.246 kb on - strand, within DDA3937_RS14795at 3395.283 kb on + strand, within DDA3937_RS14795at 3395.291 kb on - strand, within DDA3937_RS14795at 3395.311 kb on + strand, within DDA3937_RS14795at 3395.312 kb on - strand, within DDA3937_RS14795at 3395.349 kb on + strand, within DDA3937_RS14795at 3395.349 kb on + strand, within DDA3937_RS14795at 3395.350 kb on - strand, within DDA3937_RS14795at 3395.360 kb on - strand, within DDA3937_RS14795at 3395.418 kb on - strand, within DDA3937_RS14795at 3395.520 kb on + strand, within DDA3937_RS14795at 3395.521 kb on - strand, within DDA3937_RS14795at 3395.623 kb on + strand, within DDA3937_RS14795at 3396.035 kb on - strandat 3396.042 kb on - strandat 3396.177 kb on + strandat 3396.179 kb on + strandat 3396.179 kb on + strandat 3396.180 kb on - strandat 3396.180 kb on - strandat 3396.218 kb on + strandat 3396.218 kb on + strandat 3396.218 kb on + strandat 3396.218 kb on + strandat 3396.252 kb on + strandat 3396.253 kb on - strandat 3396.311 kb on + strandat 3396.311 kb on + strandat 3396.312 kb on - strandat 3396.355 kb on - strandat 3396.465 kb on + strand, within DDA3937_RS14800at 3396.499 kb on + strand, within DDA3937_RS14800at 3396.500 kb on - strand, within DDA3937_RS14800at 3396.500 kb on - strand, within DDA3937_RS14800at 3396.502 kb on + strand, within DDA3937_RS14800at 3396.502 kb on + strand, within DDA3937_RS14800at 3396.503 kb on - strand, within DDA3937_RS14800at 3396.503 kb on - strand, within DDA3937_RS14800at 3396.582 kb on + strand, within DDA3937_RS14800at 3396.583 kb on - strand, within DDA3937_RS14800at 3396.588 kb on + strand, within DDA3937_RS14800at 3396.588 kb on + strand, within DDA3937_RS14800at 3396.588 kb on + strand, within DDA3937_RS14800at 3396.588 kb on + strand, within DDA3937_RS14800at 3396.588 kb on + strand, within DDA3937_RS14800at 3396.589 kb on - strand, within DDA3937_RS14800at 3396.589 kb on - strand, within DDA3937_RS14800at 3396.589 kb on - strand, within DDA3937_RS14800at 3396.664 kb on + strand, within DDA3937_RS14800at 3396.691 kb on - strand, within DDA3937_RS14800at 3396.691 kb on - strand, within DDA3937_RS14800at 3396.691 kb on - strand, within DDA3937_RS14800at 3396.691 kb on - strand, within DDA3937_RS14800at 3396.705 kb on + strand, within DDA3937_RS14800at 3396.705 kb on + strand, within DDA3937_RS14800at 3396.705 kb on + strand, within DDA3937_RS14800at 3396.705 kb on + strand, within DDA3937_RS14800at 3396.705 kb on + strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.706 kb on - strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.709 kb on + strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.710 kb on - strand, within DDA3937_RS14800at 3396.920 kb on + strand, within DDA3937_RS14800at 3396.920 kb on + strand, within DDA3937_RS14800at 3396.921 kb on - strand, within DDA3937_RS14800at 3396.921 kb on - strand, within DDA3937_RS14800at 3396.921 kb on - strand, within DDA3937_RS14800at 3396.921 kb on - strand, within DDA3937_RS14800at 3396.921 kb on - strand, within DDA3937_RS14800

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,393,752 + DDA3937_RS14790 0.26 -0.7
3,393,752 + DDA3937_RS14790 0.26 +0.3
3,393,753 - +0.9
3,393,817 - DDA3937_RS14790 0.31 -1.1
3,393,853 - DDA3937_RS14790 0.34 -0.2
3,393,868 - DDA3937_RS14790 0.35 -1.4
3,393,868 - DDA3937_RS14790 0.35 -0.8
3,393,970 + DDA3937_RS14790 0.43 -0.3
3,393,970 + DDA3937_RS14790 0.43 +2.1
3,394,053 + DDA3937_RS14790 0.50 -1.1
3,394,053 + DDA3937_RS14790 0.50 +0.3
3,394,053 + DDA3937_RS14790 0.50 -0.1
3,394,053 + DDA3937_RS14790 0.50 +0.1
3,394,053 + DDA3937_RS14790 0.50 -0.9
3,394,054 - DDA3937_RS14790 0.50 -1.7
3,394,054 - DDA3937_RS14790 0.50 +0.0
3,394,059 + DDA3937_RS14790 0.51 -1.2
3,394,059 + DDA3937_RS14790 0.51 +0.5
3,394,059 + DDA3937_RS14790 0.51 -1.2
3,394,059 + DDA3937_RS14790 0.51 -1.2
3,394,060 - DDA3937_RS14790 0.51 -0.7
3,394,101 + DDA3937_RS14790 0.54 -0.7
3,394,102 - DDA3937_RS14790 0.54 -1.0
3,394,142 + DDA3937_RS14790 0.57 -1.5
3,394,142 + DDA3937_RS14790 0.57 -0.4
3,394,193 + DDA3937_RS14790 0.61 -0.2
3,394,263 - DDA3937_RS14790 0.67 -1.0
3,394,278 + DDA3937_RS14790 0.68 -1.2
3,394,470 + DDA3937_RS14790 0.84 +0.6
3,394,838 + DDA3937_RS14795 0.11 -0.1
3,394,838 + DDA3937_RS14795 0.11 -0.9
3,394,838 + DDA3937_RS14795 0.11 -0.9
3,394,838 + DDA3937_RS14795 0.11 -2.7
3,394,838 + DDA3937_RS14795 0.11 -0.9
3,394,838 + DDA3937_RS14795 0.11 -1.9
3,394,838 + DDA3937_RS14795 0.11 +1.2
3,394,839 - DDA3937_RS14795 0.11 -0.9
3,394,839 - DDA3937_RS14795 0.11 -0.1
3,394,839 - DDA3937_RS14795 0.11 -2.1
3,394,839 - DDA3937_RS14795 0.11 -0.4
3,394,839 - DDA3937_RS14795 0.11 -1.3
3,394,875 + DDA3937_RS14795 0.14 -0.8
3,394,875 + DDA3937_RS14795 0.14 +0.8
3,394,875 + DDA3937_RS14795 0.14 -3.3
3,394,876 - DDA3937_RS14795 0.14 -0.5
3,394,876 - DDA3937_RS14795 0.14 -0.0
3,394,905 + DDA3937_RS14795 0.16 -1.7
3,394,906 - DDA3937_RS14795 0.16 +0.1
3,394,913 - DDA3937_RS14795 0.16 -0.4
3,394,913 - DDA3937_RS14795 0.16 -0.7
3,394,913 - DDA3937_RS14795 0.16 +0.7
3,394,962 + DDA3937_RS14795 0.20 -0.8
3,394,962 + DDA3937_RS14795 0.20 -0.1
3,394,962 + DDA3937_RS14795 0.20 -0.3
3,394,962 + -0.1
3,394,962 + DDA3937_RS14795 0.20 -2.5
3,394,962 + DDA3937_RS14795 0.20 +0.3
3,394,963 - DDA3937_RS14795 0.20 -0.4
3,394,963 - DDA3937_RS14795 0.20 -0.5
3,394,963 - DDA3937_RS14795 0.20 -1.4
3,394,963 - DDA3937_RS14795 0.20 +1.6
3,394,963 - DDA3937_RS14795 0.20 -1.1
3,394,990 + DDA3937_RS14795 0.22 -0.5
3,394,990 + DDA3937_RS14795 0.22 -2.6
3,394,990 + DDA3937_RS14795 0.22 -0.5
3,394,990 + DDA3937_RS14795 0.22 -0.0
3,394,990 + DDA3937_RS14795 0.22 -0.5
3,394,990 + DDA3937_RS14795 0.22 -1.6
3,394,990 + DDA3937_RS14795 0.22 -0.9
3,394,990 + DDA3937_RS14795 0.22 +0.5
3,394,990 + DDA3937_RS14795 0.22 -0.6
3,394,991 - DDA3937_RS14795 0.22 -0.7
3,394,991 - DDA3937_RS14795 0.22 -0.9
3,394,991 - DDA3937_RS14795 0.22 -1.5
3,394,991 - DDA3937_RS14795 0.22 -0.9
3,394,991 - DDA3937_RS14795 0.22 -1.1
3,394,991 - DDA3937_RS14795 0.22 -1.0
3,394,991 - DDA3937_RS14795 0.22 -0.4
3,394,991 - DDA3937_RS14795 0.22 +0.4
3,394,991 - DDA3937_RS14795 0.22 -0.1
3,394,991 - DDA3937_RS14795 0.22 -1.0
3,394,991 - DDA3937_RS14795 0.22 -0.5
3,394,995 - DDA3937_RS14795 0.22 -0.9
3,395,012 + DDA3937_RS14795 0.23 +1.2
3,395,012 + DDA3937_RS14795 0.23 -1.7
3,395,012 + DDA3937_RS14795 0.23 +0.0
3,395,095 + DDA3937_RS14795 0.29 -0.9
3,395,177 + DDA3937_RS14795 0.34 -0.6
3,395,245 + DDA3937_RS14795 0.39 -1.5
3,395,246 - DDA3937_RS14795 0.39 -1.9
3,395,246 - DDA3937_RS14795 0.39 -0.8
3,395,283 + DDA3937_RS14795 0.41 +0.2
3,395,291 - DDA3937_RS14795 0.42 -0.3
3,395,311 + DDA3937_RS14795 0.43 -1.8
3,395,312 - DDA3937_RS14795 0.43 -0.4
3,395,349 + DDA3937_RS14795 0.46 +0.9
3,395,349 + DDA3937_RS14795 0.46 +0.5
3,395,350 - DDA3937_RS14795 0.46 -1.4
3,395,360 - DDA3937_RS14795 0.46 +1.3
3,395,418 - DDA3937_RS14795 0.50 +0.0
3,395,520 + DDA3937_RS14795 0.57 +0.0
3,395,521 - DDA3937_RS14795 0.57 -1.8
3,395,623 + DDA3937_RS14795 0.64 +1.2
3,396,035 - -1.0
3,396,042 - -0.9
3,396,177 + -0.5
3,396,179 + -0.4
3,396,179 + -0.8
3,396,180 - -0.7
3,396,180 - -0.2
3,396,218 + +0.0
3,396,218 + -2.3
3,396,218 + -1.0
3,396,218 + +1.8
3,396,252 + -1.6
3,396,253 - +1.3
3,396,311 + -0.8
3,396,311 + -1.2
3,396,312 - -1.5
3,396,355 - -0.6
3,396,465 + DDA3937_RS14800 0.14 -0.5
3,396,499 + DDA3937_RS14800 0.16 -0.7
3,396,500 - DDA3937_RS14800 0.16 -1.3
3,396,500 - DDA3937_RS14800 0.16 -0.0
3,396,502 + DDA3937_RS14800 0.16 -1.1
3,396,502 + DDA3937_RS14800 0.16 -1.2
3,396,503 - DDA3937_RS14800 0.16 +0.1
3,396,503 - DDA3937_RS14800 0.16 -1.5
3,396,582 + DDA3937_RS14800 0.20 -0.2
3,396,583 - DDA3937_RS14800 0.20 -0.9
3,396,588 + DDA3937_RS14800 0.20 -1.1
3,396,588 + DDA3937_RS14800 0.20 -0.7
3,396,588 + DDA3937_RS14800 0.20 -0.8
3,396,588 + DDA3937_RS14800 0.20 -0.3
3,396,588 + DDA3937_RS14800 0.20 +0.9
3,396,589 - DDA3937_RS14800 0.20 -1.8
3,396,589 - DDA3937_RS14800 0.20 -0.4
3,396,589 - DDA3937_RS14800 0.20 +0.1
3,396,664 + DDA3937_RS14800 0.24 +1.2
3,396,691 - DDA3937_RS14800 0.25 -1.1
3,396,691 - DDA3937_RS14800 0.25 +0.4
3,396,691 - DDA3937_RS14800 0.25 -1.0
3,396,691 - DDA3937_RS14800 0.25 -1.1
3,396,705 + DDA3937_RS14800 0.26 -1.9
3,396,705 + DDA3937_RS14800 0.26 -1.1
3,396,705 + DDA3937_RS14800 0.26 +0.2
3,396,705 + DDA3937_RS14800 0.26 -0.3
3,396,705 + DDA3937_RS14800 0.26 +1.2
3,396,706 - DDA3937_RS14800 0.26 +0.3
3,396,706 - DDA3937_RS14800 0.26 -1.5
3,396,706 - DDA3937_RS14800 0.26 -1.2
3,396,706 - DDA3937_RS14800 0.26 -1.7
3,396,706 - DDA3937_RS14800 0.26 -0.9
3,396,706 - DDA3937_RS14800 0.26 -0.4
3,396,709 + DDA3937_RS14800 0.26 -0.2
3,396,709 + DDA3937_RS14800 0.26 -1.1
3,396,709 + DDA3937_RS14800 0.26 -0.5
3,396,709 + DDA3937_RS14800 0.26 -0.1
3,396,709 + DDA3937_RS14800 0.26 -0.5
3,396,709 + DDA3937_RS14800 0.26 -0.5
3,396,709 + DDA3937_RS14800 0.26 -0.3
3,396,709 + DDA3937_RS14800 0.26 -0.9
3,396,709 + DDA3937_RS14800 0.26 +0.2
3,396,710 - DDA3937_RS14800 0.26 +0.7
3,396,710 - DDA3937_RS14800 0.26 -0.4
3,396,710 - DDA3937_RS14800 0.26 -0.6
3,396,710 - DDA3937_RS14800 0.26 -2.9
3,396,710 - DDA3937_RS14800 0.26 -0.3
3,396,710 - DDA3937_RS14800 0.26 +0.3
3,396,710 - DDA3937_RS14800 0.26 -0.3
3,396,710 - DDA3937_RS14800 0.26 -0.4
3,396,920 + DDA3937_RS14800 0.36 +0.2
3,396,920 + DDA3937_RS14800 0.36 -2.0
3,396,921 - DDA3937_RS14800 0.36 -1.7
3,396,921 - DDA3937_RS14800 0.36 -2.3
3,396,921 - DDA3937_RS14800 0.36 -0.2
3,396,921 - DDA3937_RS14800 0.36 -0.3
3,396,921 - DDA3937_RS14800 0.36 -1.7

Or see this region's nucleotide sequence